Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015757.1

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 792

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015757.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

gacgaggctactgtggtttcggttttgcctgcctgcgctcggttaggggatgctgatgttgggaaatggatacactcttatgcagattctaaaggacttctgcaagaagttgtatctgtggggaactcgcttgtgagtttttactgtaaatgtggagatttggatgctgcgtctagtgtttttgaccgaatggcgcagaagaatgttgtttcctggaactctttgatttcggggtatgcttttaatgggagaggtgaacttgggatcaacttgttcgaggagatgatgaacacagatgagaaaccaaacgatgccacgtttgttggggcattaacatgctgtgcgcatgcaggcttggttgaaaagggaagggatttgtttgcttcaatgactgaaactcaccaaattgagccgaaactagagcattacggatgcatggttgatgttcttggcagaagtggatgtctgaaggaggctcatgacttgatcaagagcatgcctatgaaaccaaatgctgccttatggggtgcactgcttggcgcttgctctactcacggtgaagtaaagcttgcggaacttgcagctaaagagcttattgatgttgaaccgtggaattctgggaattacgtgttgttatccaatatttacgcagaagaaggccggtgggatgaagttaagaaagtcagggacttgatgaaggaaaactgcatcacaaaagcacccggacagagtgccattggaaaggatgtttatgatgaggaaaagcagagctatcgacttaagcaagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

263

Amino Acids

28.72

Weight (kDa)

5.06

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	345
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	39
AflII	CTTAAG	1 cut(s)	779
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	3 cut(s)	362, 387, 605
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	4 cut(s)	568, 584, 592, 771
AluI	AGCT	4 cut(s)	568, 584, 592, 771
Alw21I	GWGCWC	1 cut(s)	532
Alw44I	GTGCAC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	658
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	3 cut(s)	167, 515, 581
ApoI	RAATTY	1 cut(s)	613
AspLEI	GCGC	4 cut(s)	38, 196, 346, 542
AsuC2I	CCSGG	1 cut(s)	723
AsuHPI	GGTGA	3 cut(s)	266, 392, 569
BaeGI	GKGCMC	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	3 cut(s)	154, 502, 593
BcgI	CGANNNNNNTGC	2 cut(s)	755, 789
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	63
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	723
BfaI	CTAG	2 cut(s)	174, 419
BfoI	RGCGCY	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	779
BfuI	GTATCC	1 cut(s)	63
BisI	GCNGC	3 cut(s)	168, 516, 582
BlsI	GCNGC	3 cut(s)	169, 517, 583
Bme1390I	CCNGG	2 cut(s)	214, 723
BmrFI	CCNGG	2 cut(s)	214, 723
BmsI	GCATC	5 cut(s)	40, 154, 301, 422, 717
BpuMI	CCSGG	1 cut(s)	723
BsaAI	YACGTR	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	608
BseGI	GGATG	6 cut(s)	55, 169, 437, 467, 673, 751
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	3 cut(s)	154, 502, 593
BshFI	GGCC	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	661, 723
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	264, 486
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	1 cut(s)	660
BspHI	TCATGA	1 cut(s)	478
BspPI	GGATC	1 cut(s)	272
BspTI	CTTAAG	1 cut(s)	779
BsrFI	RCCGGY	1 cut(s)	660
BssAI	RCCGGY	1 cut(s)	660
BssECI	CCNNGG	1 cut(s)	608
BssMI	GATC	2 cut(s)	264, 486
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	4 cut(s)	13, 146, 557, 609
BstAFI	CTTAAG	1 cut(s)	779
BstBAI	YACGTR	1 cut(s)	628
BstC8I	GCNNGC	8 cut(s)	30, 34, 348, 352, 497, 544, 570, 786
BstDSI	CCRYGG	1 cut(s)	608
BstF5I	GGATG	6 cut(s)	55, 169, 437, 467, 673, 751
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	4 cut(s)	38, 196, 346, 542
BstKTI	GATC	2 cut(s)	267, 489
BstMBI	GATC	2 cut(s)	264, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	3 cut(s)	339, 350, 499
BstSCI	CCNGG	2 cut(s)	212, 721
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	3 cut(s)	154, 502, 593
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	660
BtgI	CCRYGG	1 cut(s)	608
BtsCI	GGATG	6 cut(s)	55, 169, 437, 467, 673, 751
BtsI	GCAGTG	1 cut(s)	530
BtsIMutI	CAGTG	1 cut(s)	530
Cac8I	GCNNGC	8 cut(s)	30, 34, 348, 352, 497, 544, 570, 786
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	4 cut(s)	38, 196, 346, 542
Cfr10I	RCCGGY	1 cut(s)	660
CseI	GACGC	1 cut(s)	159
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	5 cut(s)	336, 347, 436, 479, 496
DpnI	GATC	2 cut(s)	266, 488
DpnII	GATC	2 cut(s)	264, 486
Eco57I	CTGAAG	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	437
FaeI	CATG	5 cut(s)	339, 350, 439, 482, 499
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	5 cut(s)	335, 346, 435, 478, 495
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	168, 516, 582
FokI	GGATG	6 cut(s)	62, 176, 444, 474, 680, 758
Fsp4HI	GCNGC	3 cut(s)	168, 516, 582
FspAI	RTGCGCAY	1 cut(s)	345
FspBI	CTAG	2 cut(s)	174, 419
FspI	TGCGCA	1 cut(s)	345
GlaI	GCGC	4 cut(s)	37, 195, 345, 541
GluI	GCNGC	3 cut(s)	168, 516, 582
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	660
HapII	CCGG	2 cut(s)	661, 723
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	4 cut(s)	38, 196, 346, 542
Hin1II	CATG	5 cut(s)	339, 350, 439, 482, 499
Hin6I	GCGC	4 cut(s)	36, 194, 344, 540
HinP1I	GCGC	4 cut(s)	36, 194, 344, 540
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	2 cut(s)	661, 723
HphI	GGTGA	3 cut(s)	266, 392, 569
Hpy166II	GTNNAC	2 cut(s)	257, 530
Hpy188I	TCNGA	1 cut(s)	468
Hpy188III	TCNNGA	2 cut(s)	479, 490
Hpy8I	GTNNAC	2 cut(s)	257, 530
HpyAV	CCTTC	4 cut(s)	363, 463, 650, 691
HpyCH4III	ACNGT	4 cut(s)	13, 146, 557, 609
HpyCH4IV	ACGT	2 cut(s)	317, 627
HpyCH4V	TGCA	7 cut(s)	83, 103, 350, 435, 530, 581, 708
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpySE526I	ACGT	2 cut(s)	317, 627
Hsp92II	CATG	5 cut(s)	339, 350, 439, 482, 499
HspAI	GCGC	4 cut(s)	36, 194, 344, 540
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	264, 486
LpnPI	CCDG	9 cut(s)	42, 46, 199, 226, 336, 603, 670, 674, 736
Lsp1109I	GCAGC	3 cut(s)	154, 502, 593
LweI	GCATC	5 cut(s)	40, 154, 301, 422, 717
MaeI	CTAG	2 cut(s)	174, 419
MaeII	ACGT	2 cut(s)	317, 627
MalI	GATC	2 cut(s)	266, 488
MboI	GATC	2 cut(s)	264, 486
MboII	GAAGA	2 cut(s)	211, 665
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	3 cut(s)	405, 613, 622
MnlI	CCTC	4 cut(s)	245, 271, 466, 751
Mph1103I	ATGCAT	1 cut(s)	437
MseI	TTAA	4 cut(s)	243, 332, 675, 780
MslI	CAYNNNNRTG	3 cut(s)	78, 334, 500
MspCI	CTTAAG	1 cut(s)	779
MspI	CCGG	2 cut(s)	661, 723
MspR9I	CCNGG	2 cut(s)	214, 723
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	578
NciI	CCSGG	1 cut(s)	723
NdeII	GATC	2 cut(s)	264, 486
NlaIII	CATG	5 cut(s)	339, 350, 439, 482, 499
NsbI	TGCGCA	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	437
NspI	RCATGY	3 cut(s)	339, 350, 499
PaeI	GCATGC	2 cut(s)	350, 499
PagI	TCATGA	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	86
PfoI	TCCNGGA	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	169, 517, 583
Ppu21I	YACGTR	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
RseI	CAYNNNNRTG	3 cut(s)	78, 334, 500
SaqAI	TTAA	4 cut(s)	243, 332, 675, 780
SatI	GCNGC	3 cut(s)	168, 516, 582
Sau3AI	GATC	2 cut(s)	264, 486
ScrFI	CCNGG	2 cut(s)	214, 723
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	7 cut(s)	256, 320, 570, 586, 594, 630, 773
SfaNI	GCATC	5 cut(s)	40, 154, 301, 422, 717
SmiMI	CAYNNNNRTG	3 cut(s)	78, 334, 500
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
SphI	GCATGC	2 cut(s)	350, 499
Sse9I	AATT	3 cut(s)	405, 613, 622
SsiI	CCGC	1 cut(s)	572
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	2 cut(s)	174, 419
StyD4I	CCNGG	2 cut(s)	212, 721
TaaI	ACNGT	4 cut(s)	13, 146, 557, 609
TaiI	ACGT	2 cut(s)	320, 630
TaqI	TCGA	2 cut(s)	276, 775
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	3 cut(s)	405, 613, 622
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	4 cut(s)	243, 332, 675, 780
Tru9I	TTAA	4 cut(s)	243, 332, 675, 780
TscAI	CASTG	1 cut(s)	537
TseI	GCWGC	3 cut(s)	167, 515, 581
TspDTI	ATGAA	4 cut(s)	302, 518, 684, 710
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	1 cut(s)	537
Vha464I	CTTAAG	1 cut(s)	779
VneI	GTGCAC	1 cut(s)	528
XapI	RAATTY	1 cut(s)	613
XceI	RCATGY	3 cut(s)	339, 350, 499
XspI	CTAG	2 cut(s)	174, 419
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.