Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Reverse (-)

338881 .. 339769

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000078.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgatcaagggcttctcgctctgccaccccttcgaaaaatccgtctccattttctcccatatgaaacgccacggcgtttggcccaacgagtacacttttgcgcctttactgaagtcctgctttgacatatcttattatagggtaggccagtgtgtgcatggagaggttttgagaatgggttttgagtggtttggttcagttcgggttgggatcattgagttgtatgtaacttatgtgattgtttggaatttgatgattcatgggttttgcaagagtggcaatgtcgatactgggttgtgcttgttttggaagatgggtgagaggaatgttgttttgtggaactcgatgatttcgtgcttagcgcagtgtgggaggaacagtgaagctttgggtttttttaatgagacatgggagcagggttttgaaccggatgaggctattgtggtgtcggttttgcctacgtgtgttcggttaggggatgttgatgatgggaaatggatacactcttatgcagattctaaagggcttctgcaagaagttgtgtctctggggaactcgcttgtgcgtatttactgtaaacgtggagatttggatgttgcgtctagtgtttttgaacgaatggcccagaaggatgttgtttcctggaactctttgatttcggggtatgcgtttaatgggagaggtgtacttgggatcaacttgttcgaggagatgatgcacattatgcaccatggaacaatatttattttgatggagagggtacttaacccatttgatcaggttccaaagaaaatggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

266

Amino Acids

30.29

Weight (kDa)

6.14

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	218, 701
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	3 cut(s)	92, 687, 762
AflIII	ACRYGT	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	425, 614
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Alw26I	GTCTC	3 cut(s)	49, 398, 549
AlwI	GGATC	2 cut(s)	218, 701
AoxI	GGCC	3 cut(s)	80, 145, 621
ApoI	RAATTY	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AspLEI	GCGC	2 cut(s)	103, 364
AspS9I	GGNCC	2 cut(s)	81, 622
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	33
BccI	CCATC	3 cut(s)	307, 482, 745
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	643
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	2 cut(s)	3, 775
BcoDI	GTCTC	3 cut(s)	49, 398, 549
BfaI	CTAG	1 cut(s)	603
BfuI	GTATCC	1 cut(s)	492
BlpI	GCTNAGC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	643
BmgT120I	GGNCC	2 cut(s)	81, 622
BmiI	GGNNCC	1 cut(s)	783
BmrFI	CCNGG	1 cut(s)	643
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	70, 730
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bse1I	ACTGG	2 cut(s)	148, 295
Bse3DI	GCAATG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	643
BseDI	CCNNGG	2 cut(s)	70, 730
BseGI	GGATG	4 cut(s)	436, 484, 598, 637
BseMI	GCAATG	1 cut(s)	286
BseNI	ACTGG	2 cut(s)	148, 295
BseRI	GAGGAG	1 cut(s)	722
BshFI	GGCC	3 cut(s)	82, 147, 623
BsiSI	CCGG	1 cut(s)	428
BsmAI	GTCTC	3 cut(s)	49, 398, 549
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	82, 147, 623
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	3, 210, 693, 775
Bsp1720I	GCTNAGC	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	730
BspANI	GGCC	3 cut(s)	82, 147, 623
BspLI	GGNNCC	1 cut(s)	783
BspPI	GGATC	2 cut(s)	218, 701
BspT104I	TTCGAA	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	148, 295
BssECI	CCNNGG	2 cut(s)	70, 730
BssMI	GATC	4 cut(s)	3, 210, 693, 775
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	2 cut(s)	380, 575
BstAPI	GCANNNNNTGC	1 cut(s)	724
BstBAI	YACGTR	1 cut(s)	462
BstBI	TTCGAA	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	358
BstDSI	CCRYGG	2 cut(s)	70, 730
BstF5I	GGATG	4 cut(s)	436, 484, 598, 637
BstHHI	GCGC	2 cut(s)	103, 364
BstKTI	GATC	4 cut(s)	6, 213, 696, 778
BstMAI	GTCTC	3 cut(s)	49, 398, 549
BstMBI	GATC	4 cut(s)	3, 210, 693, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 724
BstNI	CCWGG	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	82, 147, 623
BtgI	CCRYGG	2 cut(s)	70, 730
BtsCI	GGATG	4 cut(s)	436, 484, 598, 637
BtsI	GCAGTG	1 cut(s)	371
BtsIMutI	CAGTG	3 cut(s)	155, 371, 385
CfoI	GCGC	2 cut(s)	103, 364
Cfr13I	GGNCC	2 cut(s)	81, 622
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	3 cut(s)	91, 686, 761
CspCI	CAANNNNNGTGG	2 cut(s)	59, 94
CviAII	CATG	4 cut(s)	158, 260, 408, 731
CviJI	RGCY	7 cut(s)	12, 82, 147, 386, 437, 526, 623
CviKI_1	RGCY	7 cut(s)	12, 82, 147, 386, 437, 526, 623
CviQI	GTAC	3 cut(s)	91, 686, 761
DdeI	CTNAG	1 cut(s)	358
DpnI	GATC	4 cut(s)	5, 212, 695, 777
DpnII	GATC	4 cut(s)	3, 210, 693, 775
Eco130I	CCWWGG	1 cut(s)	730
Eco57I	CTGAAG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	641
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	4 cut(s)	161, 263, 411, 734
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	4 cut(s)	157, 259, 407, 730
FauNDI	CATATG	1 cut(s)	60
FbaI	TGATCA	2 cut(s)	3, 775
FokI	GGATG	4 cut(s)	443, 491, 605, 644
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	2 cut(s)	102, 363
HaeIII	GGCC	3 cut(s)	82, 147, 623
HapII	CCGG	1 cut(s)	428
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	2 cut(s)	103, 364
Hin1II	CATG	4 cut(s)	161, 263, 411, 734
Hin6I	GCGC	2 cut(s)	101, 362
HinP1I	GCGC	2 cut(s)	101, 362
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	2 cut(s)	256, 515
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	3 cut(s)	93, 578, 686
Hpy8I	GTNNAC	3 cut(s)	93, 578, 686
HpyAV	CCTTC	2 cut(s)	40, 622
HpyCH4III	ACNGT	2 cut(s)	380, 575
HpyCH4IV	ACGT	2 cut(s)	461, 580
HpyCH4V	TGCA	6 cut(s)	157, 270, 512, 532, 718, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 724
HpyF3I	CTNAG	1 cut(s)	358
HpySE526I	ACGT	2 cut(s)	461, 580
Hsp92II	CATG	4 cut(s)	161, 263, 411, 734
HspAI	GCGC	2 cut(s)	101, 362
Ksp22I	TGATCA	2 cut(s)	3, 775
Kzo9I	GATC	4 cut(s)	3, 210, 693, 775
LmnI	GCTCC	1 cut(s)	412
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	2 cut(s)	461, 580
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	5, 212, 695, 777
MboI	GATC	4 cut(s)	3, 210, 693, 775
MboII	GAAGA	1 cut(s)	322
MluCI	AATT	1 cut(s)	247
MnlI	CCTC	7 cut(s)	157, 315, 366, 427, 674, 700, 750
MseI	TTAA	3 cut(s)	399, 672, 765
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	643
MwoI	GCNNNNNNNGC	2 cut(s)	276, 724
NcoI	CCATGG	1 cut(s)	730
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	4 cut(s)	3, 210, 693, 775
NlaIII	CATG	4 cut(s)	161, 263, 411, 734
NlaIV	GGNNCC	1 cut(s)	783
NspV	TTCGAA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 350, 665
PfeI	GAWTC	2 cut(s)	256, 515
PfoI	TCCNGGA	1 cut(s)	641
Ppu21I	YACGTR	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	641
PspN4I	GGNNCC	1 cut(s)	783
PspPI	GGNCC	2 cut(s)	81, 622
RsaI	GTAC	3 cut(s)	92, 687, 762
RsaNI	GTAC	3 cut(s)	91, 686, 761
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	399, 672, 765
Sau3AI	GATC	4 cut(s)	3, 210, 693, 775
Sau96I	GGNCC	2 cut(s)	81, 622
ScrFI	CCNGG	1 cut(s)	643
SetI	ASST	6 cut(s)	168, 388, 464, 583, 685, 783
SfaNI	GCATC	1 cut(s)	705
SfuI	TTCGAA	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	1 cut(s)	247
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	641
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	2 cut(s)	380, 575
TaiI	ACGT	2 cut(s)	464, 583
TaqI	TCGA	4 cut(s)	33, 285, 344, 705
TasI	AATT	1 cut(s)	247
TatI	WGTACW	2 cut(s)	90, 685
TfiI	GAWTC	2 cut(s)	256, 515
Tru1I	TTAA	3 cut(s)	399, 672, 765
Tru9I	TTAA	3 cut(s)	399, 672, 765
TscAI	CASTG	3 cut(s)	155, 371, 385
TspDTI	ATGAA	2 cut(s)	77, 248
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	155, 371, 385
XapI	RAATTY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.