Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002834.1

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Reverse (-)

1018 .. 3627

Gene Structure 2610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002834.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggatctcaggacctctcctccctccgacgtcgttaaaaaaccgtctttccttcgacccaatcgcttctgcaaaacccaccaattcttctgggttcgtggtattagtgatgtcaacctcttggtctcggcattggcaccaaactcggcctcggtgccccatccctcttcgcacctcccgatctcggattcaatttcatgtggcaccctcggcacctctggatctcgggttgggatcattgagctgtatgtgacttgtgggagggtgggtgatgcacagaaggtgttcgatgaaatgtctaaaagagatgtgattgtttggaatttgatgattcgtgggttttgcaagagtggcaatgtcgatactgggttgtgtttgtttaggaagatgggtgagaggaatgttgttttgtggaactcgatgatttcgtgcttagagcagtgtgggagggacagtgaagctttggggttttttaatgagacatgggagcagggttttgaaccggatgaggctactgtggtgtcggttttgcctacgtgcgttcggtttggggatgttgatgatgggaaatggatacacttttatgcatattctaaagggttctgcaagaagttgtgtcgtggggaactcacttcgcctcctttccaatatttgcctaggcggatgagctttccccgccataacttcaagctgcacaccactcgaagggacaatcttccaataaaggtgacttctggtgatatgttaggttggacatttatggtgccctggcttcagatttggggttctctggtacgaatggcgagtggaatccaatggacccttgatctgtgcgctgttgaatctaattggcaagtggtggaggagagatcggtcaacaacgaggctgctatcctagttcatgctgcagacgctaatggtgcaaaaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

310

Amino Acids

34.8

Weight (kDa)

8.28

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	33
AccB1I	GGYRCC	5 cut(s)	136, 154, 203, 212, 763
AciI	CCGC	2 cut(s)	661, 676
AclWI	GGATC	3 cut(s)	12, 229, 242
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	758
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	795
AfiI	CCNNNNNNNGG	2 cut(s)	184, 705
AgsI	TTSAA	4 cut(s)	192, 500, 688, 842
AjnI	CCWGG	1 cut(s)	767
AluBI	AGCT	4 cut(s)	244, 461, 669, 691
AluI	AGCT	4 cut(s)	244, 461, 669, 691
Alw26I	GTCTC	2 cut(s)	130, 473
AlwI	GGATC	3 cut(s)	12, 229, 242
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	3 cut(s)	691, 887, 905
ApoI	RAATTY	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	284
AspA2I	CCTAGG	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	836
AspS9I	GGNCC	2 cut(s)	12, 819
AsuHPI	GGTGA	4 cut(s)	281, 404, 739, 749
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	2 cut(s)	12, 819
AvrII	CCTAGG	1 cut(s)	656
BaeGI	GKGCMC	2 cut(s)	159, 768
BanI	GGYRCC	5 cut(s)	136, 154, 203, 212, 763
BbvI	GCAGC	3 cut(s)	678, 874, 892
BccI	CCATC	3 cut(s)	168, 382, 557
BcgI	CGANNNNNNTGC	4 cut(s)	126, 160, 683, 717
BciT130I	CCWGG	1 cut(s)	769
BciVI	GTATCC	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	130, 473
BfaI	CTAG	2 cut(s)	657, 896
BfmI	CTRYAG	1 cut(s)	906
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	3 cut(s)	692, 888, 906
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	3 cut(s)	693, 889, 907
Bme1390I	CCNGG	1 cut(s)	769
Bme18I	GGWCC	2 cut(s)	12, 819
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	12, 819
BmiI	GGNNCC	6 cut(s)	138, 156, 205, 214, 765, 821
BmrFI	CCNGG	1 cut(s)	769
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	4 cut(s)	150, 208, 656, 767
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	7 cut(s)	34, 253, 283, 439, 469, 622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 705
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	769
BseDI	CCNNGG	4 cut(s)	150, 208, 656, 767
BseGI	GGATG	4 cut(s)	160, 511, 559, 669
BseLI	CCNNNNNNNGG	2 cut(s)	184, 705
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	2 cut(s)	9, 878
BseSI	GKGCMC	2 cut(s)	159, 768
BseXI	GCAGC	3 cut(s)	678, 874, 892
BsgI	GTGCAG	1 cut(s)	677
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	5 cut(s)	136, 154, 203, 212, 763
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	2 cut(s)	464, 722
BslI	CCNNNNNNNGG	2 cut(s)	184, 705
BsmAI	GTCTC	2 cut(s)	130, 473
BsmFI	GGGAC	2 cut(s)	464, 722
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	159, 768
Bsp143I	GATC	6 cut(s)	4, 180, 221, 234, 826, 869
BspACI	CCGC	2 cut(s)	661, 676
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	21
BspLI	GGNNCC	6 cut(s)	138, 156, 205, 214, 765, 821
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	3 cut(s)	12, 229, 242
BspT107I	GGYRCC	5 cut(s)	136, 154, 203, 212, 763
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	4 cut(s)	150, 208, 656, 767
BssMI	GATC	6 cut(s)	4, 180, 221, 234, 826, 869
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	769
Bst4CI	ACNGT	3 cut(s)	45, 455, 517
Bst6I	CTCTTC	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	8, 433
BstF5I	GGATG	4 cut(s)	160, 511, 559, 669
BstHHI	GCGC	1 cut(s)	836
BstKTI	GATC	6 cut(s)	7, 183, 224, 237, 829, 872
BstMAI	GTCTC	2 cut(s)	130, 473
BstMBI	GATC	6 cut(s)	4, 180, 221, 234, 826, 869
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 351, 675, 911, 920
BstNI	CCWGG	1 cut(s)	769
BstSCI	CCNGG	1 cut(s)	767
BstSFI	CTRYAG	1 cut(s)	906
BstSLI	GKGCMC	2 cut(s)	159, 768
BstV1I	GCAGC	3 cut(s)	678, 874, 892
BstX2I	RGATCY	2 cut(s)	4, 221
BstYI	RGATCY	2 cut(s)	4, 221
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	4 cut(s)	160, 511, 559, 669
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	446, 460
CfoI	GCGC	1 cut(s)	836
Cfr13I	GGNCC	2 cut(s)	12, 819
CseI	GACGC	1 cut(s)	920
Csp6I	GTAC	1 cut(s)	794
CviAII	CATG	3 cut(s)	198, 483, 902
CviJI	RGCY	8 cut(s)	149, 244, 461, 512, 669, 691, 772, 887
CviKI_1	RGCY	8 cut(s)	149, 244, 461, 512, 669, 691, 772, 887
CviQI	GTAC	1 cut(s)	794
DdeI	CTNAG	2 cut(s)	8, 433
DpnI	GATC	6 cut(s)	6, 182, 223, 236, 828, 871
DpnII	GATC	6 cut(s)	4, 180, 221, 234, 826, 869
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	656
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	12, 819
Eco57I	CTGAAG	1 cut(s)	758
Eco88I	CYCGRG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	767
EcoT14I	CCWWGG	1 cut(s)	656
EcoT22I	ATGCAT	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	3 cut(s)	201, 486, 905
FaiI	YATR	9 cut(s)	199, 249, 484, 585, 589, 681, 743, 761, 903
FaqI	GGGAC	2 cut(s)	464, 722
FatI	CATG	3 cut(s)	197, 482, 901
FauI	CCCGC	1 cut(s)	683
Fnu4HI	GCNGC	3 cut(s)	692, 888, 906
FokI	GGATG	4 cut(s)	147, 518, 566, 676
Fsp4HI	GCNGC	3 cut(s)	692, 888, 906
FspBI	CTAG	2 cut(s)	657, 896
GlaI	GCGC	1 cut(s)	835
GluI	GCNGC	3 cut(s)	692, 888, 906
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	920
HhaI	GCGC	1 cut(s)	836
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	201, 486, 905
Hin6I	GCGC	1 cut(s)	834
HinP1I	GCGC	1 cut(s)	834
HincII	GTYRAC	2 cut(s)	115, 877
HindII	GTYRAC	2 cut(s)	115, 877
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	4 cut(s)	188, 331, 810, 842
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	4 cut(s)	281, 404, 739, 749
Hpy166II	GTNNAC	2 cut(s)	115, 877
Hpy188I	TCNGA	3 cut(s)	28, 187, 777
Hpy188III	TCNNGA	3 cut(s)	10, 178, 219
Hpy8I	GTNNAC	2 cut(s)	115, 877
Hpy99I	CGWCG	2 cut(s)	32, 35
HpyAV	CCTTC	3 cut(s)	62, 274, 699
HpyCH4III	ACNGT	3 cut(s)	45, 455, 517
HpyCH4IV	ACGT	2 cut(s)	30, 536
HpyCH4V	TGCA	8 cut(s)	72, 275, 345, 587, 606, 694, 908, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 351, 675, 911, 920
HpyF3I	CTNAG	2 cut(s)	8, 433
HpySE526I	ACGT	2 cut(s)	30, 536
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	201, 486, 905
HspAI	GCGC	1 cut(s)	834
Kzo9I	GATC	6 cut(s)	4, 180, 221, 234, 826, 869
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	9 cut(s)	76, 204, 351, 476, 516, 720, 754, 776, 781
Lsp1109I	GCAGC	3 cut(s)	678, 874, 892
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	657, 896
MaeII	ACGT	2 cut(s)	30, 536
MaeIII	GTNAC	2 cut(s)	250, 727
MalI	GATC	6 cut(s)	6, 182, 223, 236, 828, 871
MboI	GATC	6 cut(s)	4, 180, 221, 234, 826, 869
MboII	GAAGA	4 cut(s)	79, 159, 397, 707
MflI	RGATCY	2 cut(s)	4, 221
MhlI	GDGCHC	2 cut(s)	159, 768
MluCI	AATT	4 cut(s)	83, 192, 322, 847
MmeI	TCCRAC	2 cut(s)	51, 731
Mph1103I	ATGCAT	1 cut(s)	589
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	2 cut(s)	36, 474
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	769
MvaI	CCWGG	1 cut(s)	769
MwoI	GCNNNNNNNGC	5 cut(s)	210, 351, 675, 911, 920
NdeII	GATC	6 cut(s)	4, 180, 221, 234, 826, 869
NlaIII	CATG	3 cut(s)	201, 486, 905
NlaIV	GGNNCC	6 cut(s)	138, 156, 205, 214, 765, 821
NmeAIII	GCCGAG	3 cut(s)	107, 125, 189
NmuCI	GTSAC	2 cut(s)	250, 727
NsiI	ATGCAT	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	2 cut(s)	176, 425
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	188, 331, 810, 842
PkrI	GCNGC	3 cut(s)	693, 889, 907
Ppu21I	YACGTR	1 cut(s)	537
PpuMI	RGGWCCY	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	767
PspGI	CCWGG	1 cut(s)	767
PspN4I	GGNNCC	6 cut(s)	138, 156, 205, 214, 765, 821
PspPI	GGNCC	2 cut(s)	12, 819
PspPPI	RGGWCCY	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	2 cut(s)	4, 221
RsaI	GTAC	1 cut(s)	795
RsaNI	GTAC	1 cut(s)	794
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	36, 474
SatI	GCNGC	3 cut(s)	692, 888, 906
Sau3AI	GATC	6 cut(s)	4, 180, 221, 234, 826, 869
Sau96I	GGNCC	2 cut(s)	12, 819
ScrFI	CCNGG	1 cut(s)	769
SduI	GDGCHC	2 cut(s)	159, 768
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	2 cut(s)	12, 819
SmiMI	CAYNNNNRTG	1 cut(s)	582
Sse9I	AATT	4 cut(s)	83, 192, 322, 847
SsiI	CCGC	2 cut(s)	661, 676
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	2 cut(s)	657, 896
StyD4I	CCNGG	1 cut(s)	767
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	3 cut(s)	45, 455, 517
TaiI	ACGT	2 cut(s)	33, 539
TaqI	TCGA	5 cut(s)	55, 288, 360, 419, 703
TaqII	GACCGA	1 cut(s)	862
TasI	AATT	4 cut(s)	83, 192, 322, 847
TfiI	GAWTC	4 cut(s)	188, 331, 810, 842
Tru1I	TTAA	2 cut(s)	36, 474
Tru9I	TTAA	2 cut(s)	36, 474
TscAI	CASTG	2 cut(s)	446, 460
TseFI	GTSAC	2 cut(s)	250, 727
TseI	GCWGC	3 cut(s)	691, 887, 905
Tsp45I	GTSAC	2 cut(s)	250, 727
TspDTI	ATGAA	3 cut(s)	186, 306, 890
TspRI	CASTG	2 cut(s)	446, 460
VpaK11BI	GGWCC	2 cut(s)	12, 819
XapI	RAATTY	1 cut(s)	322
XmaJI	CCTAGG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	657, 896
ZraI	GACGTC	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.