AT1G09190

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2966120 .. 2967733
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09190.1

Sequence Viewer

Length: 1455 bp
ATGGAAATCGAGCGTAAGCTGCTGCGTCTTCTCCACGGCCACAATACTCGAACCCGTTTACCCGAAATCCACGCCCATCTTCTGCGTCACTTCCTTCATGGTTCCAATCTCCTTCTCGCCCACTTCATCTCTATCTGCGGATCCCTCAGCAACTCTGATTACGCCAACCGCGTCTTCTCTCATATCCAAAACCCTAACGTTCTGGTCTTCAACGCCATGATCAAATGCTATTCGCTTGTCGGTCCGCCTCTAGAATCTTTATCTTTCTTCTCTTCCATGAAAAGCCGGGGAATTTGGGCTGACGAGTATACTTACGCGCCTTTGCTCAAATCCTGTTCGTCTCTTTCTGATTTGCGATTTGGGAAATGCGTTCATGGTGAGCTTATAAGAACTGGGTTCCACCGTCTTGGGAAAATTAGGATTGGGGTGGTGGAGCTTTATACTTCCGGTGGGAGAATGGGTGATGCACAGAAAGTGTTCGACGAAATGTCTGAGAGAAACGTTGTCGTCTGGAATCTTATGATTCGCGGGTTCTGTGACTCCGGGGACGTTGAAAGAGGTCTTCATTTGTTCAAACAGATGAGCGAAAGAAGCATTGTGTCGTGGAATTCGATGATATCTAGCTTGTCTAAATGTGGTAGAGATCGTGAGGCTTTGGAGCTTTTCTGCGAAATGATTGATCAAGGTTTTGACCCTGATGAGGCGACTGTGGTTACAGTCTTGCCAATTTCTGCATCTCTAGGAGTGTTGGATACCGGAAAATGGATTCATTCTACCGCAGAATCCAGTGGTTTGTTTAAAGATTTCATCACCGTGGGAAACGCTTTGGTAGATTTCTACTGCAAAAGCGGCGACTTGGAGGCAGCAACGGCTATATTTAGAAAAATGCAGCGTAGAAACGTTGTTTCATGGAACACATTGATATCGGGATCAGCCGTAAACGGAAAGGGAGAATTTGGGATAGACTTGTTTGATGCTATGATAGAGGAAGGGAAAGTAGCTCCAAATGAAGCGACATTTTTGGGGGTTTTGGCATGTTGCTCATACACAGGTCAGGTGGAGAGAGGAGAGGAATTGTTTGGTTTGATGATGGAAAGATTCAAACTTGAGGCGAGAACCGAGCATTACGGTGCCATGGTAGATCTAATGAGTAGAAGTGGGAGAATCACAGAGGCGTTTAAGTTTCTAAAAAATATGCCCGTAAACGCAAATGCGGCAATGTGGGGGTCGCTGCTCAGTGCTTGTCGTAGCCACGGAGATGTAAAGCTAGCAGAAGTTGCAGCAATGGAGTTAGTGAAGATTGAGCCAGGGAATTCGGGGAATTATGTGTTGTTATCTAATTTGTATGCAGAGGAAGGGAGATGGCAAGATGTGGAGAAGGTACGAACGTTGATGAAAAAGAACCGCCTTAGAAAGTCTACTGGCCAAAGCACCATTTGCGATGTTTCAGTCTGA

Protein Analysis

484

Amino Acids

53.96

Weight (kDa)

7.21

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 65 - 112 3.5e-07 PPR repeat family
PPR_2 PF13041 166 - 199 4.8e-07 PPR repeat family
PPR PF01535 169 - 198 1.4e-06 PPR repeat
PPR_2 PF13041 198 - 240 7.1e-10 PPR repeat family
PPR PF01535 200 - 230 3.9e-09 PPR repeat
PPR_2 PF13041 299 - 346 3.3e-06 PPR repeat family
E_motif PF20431 418 - 479 5.9e-21 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 1130
AccI GTMKAC 2 cut(s) 308, 1418
AccII CGCG 3 cut(s) 171, 317, 528
AciI CCGC 8 cut(s) 138, 169, 245, 528, 777, 849, 1214, 1405
AclI AACGTT 4 cut(s) 198, 501, 900, 1388
AclWI GGATC 3 cut(s) 135, 148, 937
AcoI YGGCCR 2 cut(s) 37, 1423
AcsI RAATTY 4 cut(s) 291, 607, 953, 1312
AfaI GTAC 1 cut(s) 1383
AfiI CCNNNNNNNGG 2 cut(s) 700, 762
AgsI TTSAA 4 cut(s) 211, 554, 574, 1102
AhdI GACNNNNNGTC 1 cut(s) 487
AjnI CCWGG 1 cut(s) 1306
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 7 cut(s) 19, 382, 436, 624, 661, 1001, 1267
AluI AGCT 7 cut(s) 19, 382, 436, 624, 661, 1001, 1267
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 3 cut(s) 135, 148, 937
AoxI GGCC 2 cut(s) 37, 1423
ApeKI GCWGC 6 cut(s) 19, 22, 863, 889, 1231, 1280
ApoI RAATTY 4 cut(s) 291, 607, 953, 1312
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 2 cut(s) 287, 544
AsuHPI GGTGA 3 cut(s) 389, 473, 802
AsuNHI GCTAGC 1 cut(s) 1267
AvaII GGWCC 1 cut(s) 242
BaeI ACNNNNGTAYC 2 cut(s) 1373, 1406
BalI TGGCCA 1 cut(s) 1425
BamHI GGATCC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 1130
BbsI GAAGAC 4 cut(s) 20, 166, 199, 554
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 6 cut(s) 6, 9, 875, 901, 1218, 1292
BccI CCATC 3 cut(s) 84, 1084, 1356
BceAI ACGGC 3 cut(s) 52, 885, 920
BciT130I CCWGG 1 cut(s) 1308
BciVI GTATCC 1 cut(s) 745
BclI TGATCA 2 cut(s) 219, 679
BcnI CCSGG 2 cut(s) 287, 544
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 4 cut(s) 251, 621, 740, 1268
BfuI GTATCC 1 cut(s) 745
BglII AGATCT 1 cut(s) 1141
BisI GCNGC 8 cut(s) 20, 23, 850, 864, 890, 1215, 1232, 1281
BlsI GCNGC 8 cut(s) 21, 24, 851, 865, 891, 1216, 1233, 1282
Bme1390I CCNGG 3 cut(s) 287, 544, 1308
Bme18I GGWCC 1 cut(s) 242
BmeRI GACNNNNNGTC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 4 cut(s) 103, 142, 398, 1132
BmrFI CCNGG 3 cut(s) 287, 544, 1308
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 3 cut(s) 454, 743, 964
BmtI GCTAGC 1 cut(s) 1271
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 4 cut(s) 20, 166, 199, 554
Bpu10I CCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 1127
BpuMI CCSGG 2 cut(s) 287, 544
BsaJI CCNNGG 7 cut(s) 34, 286, 543, 813, 1134, 1252, 1307
BsaWI WCCGGW 2 cut(s) 446, 755
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 700, 762
Bse1I ACTGG 3 cut(s) 397, 786, 1426
Bse3DI GCAATG 2 cut(s) 1224, 1290
BseBI CCWGG 1 cut(s) 1308
BseDI CCNNGG 7 cut(s) 34, 286, 543, 813, 1134, 1252, 1307
BseLI CCNNNNNNNGG 2 cut(s) 700, 762
BseMI GCAATG 2 cut(s) 1224, 1290
BseMII CTCAG 3 cut(s) 160, 483, 1249
BseNI ACTGG 3 cut(s) 397, 786, 1426
BseRI GAGGAG 1 cut(s) 1080
BseXI GCAGC 6 cut(s) 6, 9, 875, 901, 1218, 1292
Bsh1236I CGCG 3 cut(s) 171, 317, 528
BshFI GGCC 2 cut(s) 39, 1425
BshNI GGYRCC 1 cut(s) 1130
BsiSI CCGG 4 cut(s) 286, 447, 543, 756
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 2 cut(s) 700, 762
BsmAI GTCTC 1 cut(s) 345
BsmBI CGTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 2 cut(s) 39, 1425
Bsp143I GATC 6 cut(s) 140, 219, 643, 679, 929, 1141
Bsp19I CCATGG 1 cut(s) 1134
BspACI CCGC 8 cut(s) 138, 169, 245, 528, 777, 849, 1214, 1405
BspANI GGCC 2 cut(s) 39, 1425
BspCNI CTCAG 3 cut(s) 159, 484, 1248
BspFNI CGCG 3 cut(s) 171, 317, 528
BspLI GGNNCC 4 cut(s) 103, 142, 398, 1132
BspOI GCTAGC 1 cut(s) 1271
BspPI GGATC 3 cut(s) 135, 148, 937
BspT107I GGYRCC 1 cut(s) 1130
BsrDI GCAATG 2 cut(s) 1224, 1290
BsrI ACTGG 3 cut(s) 397, 786, 1426
BssECI CCNNGG 7 cut(s) 34, 286, 543, 813, 1134, 1252, 1307
BssMI GATC 6 cut(s) 140, 219, 643, 679, 929, 1141
BssNAI GTATAC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 1134
Bst1107I GTATAC 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 1308
Bst4CI ACNGT 5 cut(s) 404, 709, 718, 814, 1130
Bst6I CTCTTC 1 cut(s) 277
BstAPI GCANNNNNTGC 2 cut(s) 1277, 1437
BstC8I GCNNGC 1 cut(s) 1269
BstDEI CTNAG 4 cut(s) 146, 492, 1235, 1409
BstDSI CCRYGG 4 cut(s) 34, 813, 1134, 1252
BstFNI CGCG 3 cut(s) 171, 317, 528
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 6 cut(s) 143, 222, 646, 682, 932, 1144
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 6 cut(s) 140, 219, 643, 679, 929, 1141
BstMWI GCNNNNNNNGC 7 cut(s) 19, 591, 849, 869, 1214, 1277, 1437
BstNI CCWGG 1 cut(s) 1308
BstNSI RCATGY 1 cut(s) 1038
BstSCI CCNGG 3 cut(s) 285, 542, 1306
BstUI CGCG 3 cut(s) 171, 317, 528
BstV1I GCAGC 6 cut(s) 6, 9, 875, 901, 1218, 1292
BstV2I GAAGAC 4 cut(s) 20, 166, 199, 554
BstX2I RGATCY 2 cut(s) 140, 1141
BstXI CCANNNNNNTGG 1 cut(s) 407
BstYI RGATCY 2 cut(s) 140, 1141
BstZ17I GTATAC 1 cut(s) 309
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 2 cut(s) 39, 1425
BtgI CCRYGG 4 cut(s) 34, 813, 1134, 1252
BtsIMutI CAGTG 2 cut(s) 793, 1243
Cac8I GCNNGC 1 cut(s) 1269
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 242
CpoI CGGWCCG 1 cut(s) 242
CseI GACGC 3 cut(s) 14, 74, 160
Csp6I GTAC 1 cut(s) 1382
CspI CGGWCCG 1 cut(s) 242
CviAII CATG 7 cut(s) 98, 217, 277, 374, 909, 1035, 1135
CviQI GTAC 1 cut(s) 1382
DdeI CTNAG 4 cut(s) 146, 492, 1235, 1409
DpnI GATC 6 cut(s) 142, 221, 645, 681, 931, 1143
DpnII GATC 6 cut(s) 140, 219, 643, 679, 929, 1141
DraI TTTAAA 1 cut(s) 799
DriI GACNNNNNGTC 1 cut(s) 487
EaeI YGGCCR 2 cut(s) 37, 1423
Eam1104I CTCTTC 1 cut(s) 277
Eam1105I GACNNNNNGTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 277
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 1134
Eco32I GATATC 2 cut(s) 618, 924
Eco47I GGWCC 1 cut(s) 242
EcoRI GAATTC 2 cut(s) 607, 1312
EcoRII CCWGG 1 cut(s) 1306
EcoRV GATATC 2 cut(s) 618, 924
EcoT14I CCWWGG 1 cut(s) 1134
ErhI CCWWGG 1 cut(s) 1134
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 7 cut(s) 101, 220, 280, 377, 912, 1038, 1138
FaqI GGGAC 1 cut(s) 560
FatI CATG 7 cut(s) 97, 216, 276, 373, 908, 1034, 1134
FauI CCCGC 1 cut(s) 521
FbaI TGATCA 2 cut(s) 219, 679
FblI GTMKAC 2 cut(s) 308, 1418
Fnu4HI GCNGC 8 cut(s) 20, 23, 850, 864, 890, 1215, 1232, 1281
Fsp4HI GCNGC 8 cut(s) 20, 23, 850, 864, 890, 1215, 1232, 1281
FspBI CTAG 4 cut(s) 251, 621, 740, 1268
GlaI GCGC 1 cut(s) 318
GluI GCNGC 8 cut(s) 20, 23, 850, 864, 890, 1215, 1232, 1281
HaeIII GGCC 2 cut(s) 39, 1425
HapII CCGG 4 cut(s) 286, 447, 543, 756
HgaI GACGC 3 cut(s) 14, 74, 160
HhaI GCGC 1 cut(s) 319
Hin1II CATG 7 cut(s) 101, 220, 280, 377, 912, 1038, 1138
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 8 cut(s) 254, 514, 523, 539, 766, 782, 1098, 1164
HpaII CCGG 4 cut(s) 286, 447, 543, 756
HphI GGTGA 3 cut(s) 389, 473, 802
Hpy166II GTNNAC 5 cut(s) 59, 309, 940, 1204, 1419
Hpy188I TCNGA 4 cut(s) 157, 349, 493, 1454
Hpy188III TCNNGA 4 cut(s) 251, 511, 647, 927
Hpy8I GTNNAC 5 cut(s) 59, 309, 940, 1204, 1419
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 5 cut(s) 104, 122, 983, 1349, 1372
HpyCH4III ACNGT 5 cut(s) 404, 709, 718, 814, 1130
HpyCH4IV ACGT 5 cut(s) 198, 501, 549, 900, 1388
HpyCH4V TGCA 6 cut(s) 467, 734, 843, 889, 1280, 1349
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 591, 849, 869, 1214, 1277, 1437
HpyF3I CTNAG 4 cut(s) 146, 492, 1235, 1409
HpySE526I ACGT 5 cut(s) 198, 501, 549, 900, 1388
Hsp92II CATG 7 cut(s) 101, 220, 280, 377, 912, 1038, 1138
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 2 cut(s) 219, 679
Kzo9I GATC 6 cut(s) 140, 219, 643, 679, 929, 1141
LmnI GCTCC 3 cut(s) 433, 658, 1006
Lsp1109I GCAGC 6 cut(s) 6, 9, 875, 901, 1218, 1292
LweI GCATC 3 cut(s) 454, 743, 964
MaeI CTAG 4 cut(s) 251, 621, 740, 1268
MaeII ACGT 5 cut(s) 198, 501, 549, 900, 1388
MaeIII GTNAC 3 cut(s) 86, 536, 712
MalI GATC 6 cut(s) 142, 221, 645, 681, 931, 1143
MboI GATC 6 cut(s) 140, 219, 643, 679, 929, 1141
MboII GAAGA 8 cut(s) 20, 71, 166, 199, 259, 264, 554, 1309
MflI RGATCY 2 cut(s) 140, 1141
MlsI TGGCCA 1 cut(s) 1425
MluCI AATT 9 cut(s) 291, 414, 607, 726, 953, 1073, 1312, 1321, 1339
MluNI TGGCCA 1 cut(s) 1425
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 729
Mox20I TGGCCA 1 cut(s) 1425
MroXI GAANNNNTTC 1 cut(s) 476
MscI TGGCCA 1 cut(s) 1425
MseI TTAA 2 cut(s) 798, 1179
MslI CAYNNNNRTG 3 cut(s) 812, 1128, 1257
Msp20I TGGCCA 1 cut(s) 1425
MspI CCGG 4 cut(s) 286, 447, 543, 756
MspR9I CCNGG 3 cut(s) 287, 544, 1308
MvaI CCWGG 1 cut(s) 1308
MvnI CGCG 3 cut(s) 171, 317, 528
MwoI GCNNNNNNNGC 7 cut(s) 19, 591, 849, 869, 1214, 1277, 1437
NciI CCSGG 2 cut(s) 287, 544
NcoI CCATGG 1 cut(s) 1134
NdeII GATC 6 cut(s) 140, 219, 643, 679, 929, 1141
NheI GCTAGC 1 cut(s) 1267
NlaIII CATG 7 cut(s) 101, 220, 280, 377, 912, 1038, 1138
NlaIV GGNNCC 4 cut(s) 103, 142, 398, 1132
NmuCI GTSAC 2 cut(s) 86, 536
NspI RCATGY 1 cut(s) 1038
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 608
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 7 cut(s) 254, 514, 523, 766, 782, 1098, 1164
PkrI GCNGC 8 cut(s) 21, 24, 851, 865, 891, 1216, 1233, 1282
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PsiI TTATAA 1 cut(s) 386
Psp1406I AACGTT 4 cut(s) 198, 501, 900, 1388
Psp6I CCWGG 1 cut(s) 1306
PspGI CCWGG 1 cut(s) 1306
PspN4I GGNNCC 4 cut(s) 103, 142, 398, 1132
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 2 cut(s) 140, 1141
RsaI GTAC 1 cut(s) 1383
RsaNI GTAC 1 cut(s) 1382
RseI CAYNNNNRTG 3 cut(s) 812, 1128, 1257
Rsr2I CGGWCCG 1 cut(s) 242
RsrII CGGWCCG 1 cut(s) 242
SaqAI TTAA 2 cut(s) 798, 1179
SatI GCNGC 8 cut(s) 20, 23, 850, 864, 890, 1215, 1232, 1281
Sau3AI GATC 6 cut(s) 140, 219, 643, 679, 929, 1141
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 3 cut(s) 287, 544, 1308
SfaNI GCATC 3 cut(s) 454, 743, 964
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 3 cut(s) 812, 1128, 1257
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
Sse9I AATT 9 cut(s) 291, 414, 607, 726, 953, 1073, 1312, 1321, 1339
SsiI CCGC 8 cut(s) 138, 169, 245, 528, 777, 849, 1214, 1405
SspMI CTAG 4 cut(s) 251, 621, 740, 1268
StyD4I CCNGG 3 cut(s) 285, 542, 1306
StyI CCWWGG 1 cut(s) 1134
TaaI ACNGT 5 cut(s) 404, 709, 718, 814, 1130
TaiI ACGT 5 cut(s) 201, 504, 552, 903, 1391
TaqI TCGA 4 cut(s) 9, 49, 480, 611
TaqII GACCGA 1 cut(s) 230
TasI AATT 9 cut(s) 291, 414, 607, 726, 953, 1073, 1312, 1321, 1339
TauI GCSGC 2 cut(s) 852, 1217
TfiI GAWTC 7 cut(s) 254, 514, 523, 766, 782, 1098, 1164
Tru1I TTAA 2 cut(s) 798, 1179
Tru9I TTAA 2 cut(s) 798, 1179
TscAI CASTG 2 cut(s) 793, 1243
TseFI GTSAC 2 cut(s) 86, 536
TseI GCWGC 6 cut(s) 19, 22, 863, 889, 1231, 1280
Tsp45I GTSAC 2 cut(s) 86, 536
TspGWI ACGGA 2 cut(s) 957, 1269
TspRI CASTG 2 cut(s) 793, 1243
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 4 cut(s) 291, 607, 953, 1312
XbaI TCTAGA 1 cut(s) 250
XceI RCATGY 1 cut(s) 1038
XmiI GTMKAC 2 cut(s) 308, 1418
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 4 cut(s) 251, 621, 740, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.