Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000528.1

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Reverse (-)

91684 .. 92275

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000528.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgccaatagtcgcccatgggggtgtgtggggagcactacttggtgcgtgccgtatccataagaaccccgacattactcaaattgctgccgcccatctatttgagcttgaacctaataatattggaaactatgtgatgctctttaacgtatatgcatcagcaggaagtcaccccgaatacaatgagattaagaaggcgttggacgatcttctaaacagattgcagaatatgcagggttatcagccaaacctgaattcggtggattatgatgtcggggatgaagagaagatgcatatattgcttgctcatagcgagaagctggctttgtcatacgcattgctcagcgcagattctggttccaccattaagatcatcaagaacataaaatatgtgaagacttactgtcatgccttcatgtgtggtacgtgcatcaaaggttacaggaaggcatattattgcgagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

155

Amino Acids

17.36

Weight (kDa)

7.03

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AluBI	AGCT	2 cut(s)	106, 319
AluI	AGCT	2 cut(s)	106, 319
Alw21I	GWGCWC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	2 cut(s)	87, 90
BlpI	GCTNAGC	1 cut(s)	341
BlsI	GCNGC	2 cut(s)	88, 91
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmiI	GGNNCC	1 cut(s)	358
BmsI	GCATC	4 cut(s)	126, 164, 279, 438
BpiI	GAAGAC	1 cut(s)	401
Bpu1102I	GCTNAGC	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	205, 369
Bsp1720I	GCTNAGC	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	205, 369
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	2 cut(s)	229, 298
BstBAI	YACGTR	1 cut(s)	426
BstC8I	GCNNGC	3 cut(s)	49, 303, 321
BstDEI	CTNAG	1 cut(s)	341
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	2 cut(s)	208, 372
BstMBI	GATC	2 cut(s)	205, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 298
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	401
BsuI	GTATCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	49, 303, 321
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	423
CviAII	CATG	3 cut(s)	17, 407, 415
CviJI	RGCY	4 cut(s)	106, 244, 319, 323
CviKI_1	RGCY	4 cut(s)	106, 244, 319, 323
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	2 cut(s)	207, 371
DpnII	GATC	2 cut(s)	205, 369
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	276
Eam1105I	GACNNNNNGTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	16
EcoT22I	ATGCAT	2 cut(s)	157, 294
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	20, 410, 418
FatI	CATG	3 cut(s)	16, 406, 414
Fnu4HI	GCNGC	2 cut(s)	87, 90
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	87, 90
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	2 cut(s)	87, 90
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	20, 410, 418
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	376
HpyAV	CCTTC	3 cut(s)	187, 421, 439
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	2 cut(s)	147, 425
HpyCH4V	TGCA	5 cut(s)	155, 223, 232, 292, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 298
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	2 cut(s)	147, 425
Hsp92II	CATG	3 cut(s)	20, 410, 418
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	205, 369
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	6 cut(s)	147, 218, 263, 305, 339, 427
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	4 cut(s)	126, 164, 279, 438
MaeII	ACGT	2 cut(s)	147, 425
MaeIII	GTNAC	2 cut(s)	167, 437
MalI	GATC	2 cut(s)	207, 371
MboI	GATC	2 cut(s)	205, 369
MboII	GAAGA	4 cut(s)	200, 293, 298, 406
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	81, 253
MmeI	TCCRAC	1 cut(s)	180
Mph1103I	ATGCAT	2 cut(s)	157, 294
MseI	TTAA	3 cut(s)	144, 189, 366
MslI	CAYNNNNRTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	229, 298
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	205, 369
NlaIII	CATG	3 cut(s)	20, 410, 418
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	2 cut(s)	157, 294
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	88, 91
Ppu21I	YACGTR	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	144, 189, 366
SatI	GCNGC	2 cut(s)	87, 90
Sau3AI	GATC	2 cut(s)	205, 369
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	7 cut(s)	108, 115, 150, 252, 321, 428, 439
SfaNI	GCATC	4 cut(s)	126, 164, 279, 438
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	2 cut(s)	81, 253
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	2 cut(s)	150, 428
TasI	AATT	2 cut(s)	81, 253
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	3 cut(s)	144, 189, 366
Tru9I	TTAA	3 cut(s)	144, 189, 366
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	294, 403
XapI	RAATTY	1 cut(s)	253
Zsp2I	ATGCAT	2 cut(s)	157, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.