Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

12662855 .. 12663037

Gene Structure 183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG143700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCCAATAGTCGCCCATGGGGGTGTGTGGGGAGCACTACTTGGTGCGTGCCGTATCCATAAGAAACCCGACATAGCTCAAATTGCTGCCGCCCATCTATTTGAGCTTGAACCTAATAATATTGGAAACTATGTGATGCTCCCTAACGTATATGCATCAGCAGGAAGGTGGGGTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

60

Amino Acids

6.42

Weight (kDa)

6.81

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	22 - 60	8.9e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	110
AluBI	AGCT	2 cut(s)	77, 106
AluI	AGCT	2 cut(s)	77, 106
Alw21I	GWGCWC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	2 cut(s)	87, 90
BlsI	GCNGC	2 cut(s)	88, 91
BmsI	GCATC	2 cut(s)	126, 164
BsaJI	CCNNGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	49
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	2 cut(s)	77, 106
CviKI_1	RGCY	2 cut(s)	77, 106
Eco130I	CCWWGG	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	20
FaiI	YATR	6 cut(s)	18, 60, 74, 132, 151, 153
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	87, 90
Fsp4HI	GCNGC	2 cut(s)	87, 90
GluI	GCNGC	2 cut(s)	87, 90
Hin1II	CATG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	32, 144
LpnPI	CCDG	1 cut(s)	147
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	126, 164
MaeII	ACGT	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	157
MslI	CAYNNNNRTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	16
NlaIII	CATG	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	88, 91
RseI	CAYNNNNRTG	1 cut(s)	21
SatI	GCNGC	2 cut(s)	87, 90
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	5 cut(s)	79, 108, 115, 150, 170
SfaNI	GCATC	2 cut(s)	126, 164
SgeI	CNNG	6 cut(s)	29, 53, 60, 80, 119, 174
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	16
TaiI	ACGT	1 cut(s)	150
TasI	AATT	1 cut(s)	81
TauI	GCSGC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.