RchiOBHm_Chr2g0094071

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
7137153 .. 7139044
1892 bp
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UTR
Exon/CDS
Intron
PRQ46910

Sequence Viewer

Length: 1503 bp
ATGATCAACCCTTGCCGTGAGGCCGAACGGAGGGTGCTCCGGCTCCTCCACGGCCCCAAAACCCGAACCCAACTCCGCCAAATCCACGCCCACCTCCTCCGCCACGGCCTCGACCAACTCAACCAGCTCATCTCCCACTTCGTCTCCGTCTGCTACTCCCTCAACAAAATGCACTACGCCAATCTCATCTTTCAACACACCCACAGCCCCAACATCCTCCTCTTCAACGCCATGATCAAGGGCTTCTCCCTCTGCCACCCCTTCGAAAAATCCCTCCACATTTTCTCCGATATGAAACGACGCGGCGTTTGGCCCGACGAGTACACCTTTGCGCCTCTGCTCAAGTCCTGCTCCAACATTTGTCATTCTAGTTTGGGCCGGTGTGTGCATGGAGAGGTTTTGAGAACGGGGTTTGAGTGGTTTGGTTCGATTCGGGTTGGGATTATTGAGCTGTATGTGACTTGTGGGAGGATGAGGGATGCACAGCACGTGTTCGATGAAATGTCTCAGAGAGATGTGATTTTTTGGAATTTGATGATTCGTGGGTTTTGCAAGAGTGGTAATGTCGATACTGGGTTGTGTTTGTTTAGGCAGATGGGTGAGAGGAATGTTGTTTCTTGGAACTCGATAATTTCGTGCTTAGCGCAGTGTGGGAGGGACAGTGAAGCTTTGGGGGTTTTTAATGAGATGAGGGAGCAGAGTTTTGAACCGGACGAGGCTACTGTGGTGTCGGTTTTGCCTGCCTGCGCTCGGTTAGGGGATGTTGATGTTGGGAAATGGATACACTCTTATGCAGATTCTAAAGGACTTCTGCAAGAAGTTGTATCTGTGGGGAACTCGCTTGTGAGTTTTTACTGTAAATGTGGAGATTTGGATGCTGCGTCTAGTGTTTTTGACCGAATGGCGCAGAAGAATGTTGTTTCCTGGAACTCTTTGATTTCGGGGTATGCTTTTAATGGGAGAGGTGAAATTGGGATCAACTTGTTCGAGGAGATGATGAACACAGATGAGAAACCAAACGATGCCACGTTTGTTGGGGCATTAACATGCTGTGCGCATGCTGGCTTGGTTGAAAAGGGAAGGGATTTGTTTGCTTCAATGACTGAAACTCACCGAATTGAGCCTAAACTAGAGCATTATGGATGCATGGTTGATGTTCTTGGCAGAAGTGGATGTCTGAAGGAGGCTCATGACTTGATCAAGAGCATGCCTATGAAACCAAATGCTGCCTTATGGGGTGCACTGCTTGGTGCTTGCTCTACTCACGGTGAAGTAAAGCTTGCGGAACTTGCAGCTAAAGAGCTTATTGATGTTGAACCGTGGAATTCTGGGAATTACGTGTTGTTATCCAATATTTACGCAGAAGAAGGCCGGTGGGATGAAGTTGAGAAAGTCAGGGACTTGATGAAGGAAAACTGCATCACAAAAGCACCCGGACAGAGTGCCATTGGAAAGGGTGTTTATGATGAGGAAAAGCAGAGCTATCGACTTAAGCAAGCCTGA

Protein Analysis

500

Amino Acids

56.13

Weight (kDa)

6.45

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 70 - 118 1e-08 PPR repeat family
PPR_2 PF13041 171 - 204 3.4e-06 PPR repeat family
PPR PF01535 176 - 204 2.3e-06 PPR repeat
PPR_2 PF13041 202 - 251 1.2e-10 PPR repeat family
PPR PF01535 205 - 233 2.7e-07 PPR repeat
PPR_2 PF13041 304 - 352 8.6e-10 PPR repeat family
PPR PF01535 307 - 333 6.5e-06 PPR repeat
E_motif PF20431 422 - 483 1.8e-21 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1056
AccII CGCG 1 cut(s) 303
AciI CCGC 4 cut(s) 76, 100, 303, 1283
AclWI GGATC 1 cut(s) 983
AcsI RAATTY 2 cut(s) 529, 1324
AcuI CTGAAG 1 cut(s) 1199
AcvI CACGTG 1 cut(s) 490
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 30, 750
AflII CTTAAG 1 cut(s) 1490
AflIII ACRYGT 2 cut(s) 489, 1338
AgsI TTSAA 6 cut(s) 194, 226, 707, 1073, 1098, 1316
AjnI CCWGG 1 cut(s) 923
AluBI AGCT 7 cut(s) 127, 451, 668, 1279, 1295, 1303, 1482
AluI AGCT 7 cut(s) 127, 451, 668, 1279, 1295, 1303, 1482
Alw21I GWGCWC 2 cut(s) 39, 1243
Alw26I GTCTC 2 cut(s) 148, 510
Alw44I GTGCAC 1 cut(s) 1239
AlwI GGATC 1 cut(s) 983
AoxI GGCC 6 cut(s) 21, 52, 106, 311, 376, 1369
ApaLI GTGCAC 1 cut(s) 1239
ApeKI GCWGC 3 cut(s) 878, 1226, 1292
ApoI RAATTY 2 cut(s) 529, 1324
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AspLEI GCGC 5 cut(s) 334, 646, 749, 907, 1057
AspS9I GGNCC 3 cut(s) 53, 312, 376
AsuC2I CCSGG 1 cut(s) 1434
AsuHPI GGTGA 4 cut(s) 611, 977, 1103, 1280
AsuII TTCGAA 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 1243
BbrPI CACGTG 1 cut(s) 490
Bbv12I GWGCWC 2 cut(s) 39, 1243
BbvI GCAGC 3 cut(s) 865, 1213, 1304
BccI CCATC 1 cut(s) 589
BceAI ACGGC 2 cut(s) 67, 121
BcgI CGANNNNNNTGC 2 cut(s) 1466, 1500
BciT130I CCWGG 1 cut(s) 925
BciVI GTATCC 1 cut(s) 774
BclI TGATCA 3 cut(s) 3, 234, 1197
BcnI CCSGG 1 cut(s) 1434
BcoDI GTCTC 2 cut(s) 148, 510
BfaI CTAG 3 cut(s) 369, 885, 1130
BfrI CTTAAG 1 cut(s) 1490
BfuI GTATCC 1 cut(s) 774
BisI GCNGC 4 cut(s) 304, 879, 1227, 1293
BlpI GCTNAGC 1 cut(s) 640
BlsI GCNGC 4 cut(s) 305, 880, 1228, 1294
Bme1390I CCNGG 2 cut(s) 925, 1434
BmgT120I GGNCC 3 cut(s) 53, 312, 376
BmiI GGNNCC 2 cut(s) 44, 55
BmrFI CCNGG 2 cut(s) 925, 1434
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 5 cut(s) 469, 865, 1012, 1133, 1428
BmuI ACTGGG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 640
Bpu14I TTCGAA 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 1434
BsaAI YACGTR 2 cut(s) 490, 1339
BsaJI CCNNGG 3 cut(s) 49, 103, 1319
BsaWI WCCGGW 1 cut(s) 709
BsaXI ACNNNNNCTCC 6 cut(s) 128, 158, 269, 299, 646, 676
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 750
Bse118I RCCGGY 2 cut(s) 378, 1371
Bse1I ACTGG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 925
BseDI CCNNGG 3 cut(s) 49, 103, 1319
BseGI GGATG 8 cut(s) 213, 477, 484, 766, 880, 1148, 1178, 1384
BseLI CCNNNNNNNGG 2 cut(s) 30, 750
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 4 cut(s) 35, 86, 209, 1004
BseSI GKGCMC 1 cut(s) 1243
BseXI GCAGC 3 cut(s) 865, 1213, 1304
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 6 cut(s) 23, 54, 108, 313, 378, 1371
BsiHKAI GWGCWC 2 cut(s) 39, 1243
BsiSI CCGG 5 cut(s) 40, 379, 710, 1372, 1434
BslFI GGGAC 2 cut(s) 671, 1412
BslI CCNNNNNNNGG 2 cut(s) 30, 750
BsmAI GTCTC 2 cut(s) 148, 510
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 671, 1412
BsnI GGCC 6 cut(s) 23, 54, 108, 313, 378, 1371
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 39, 1243
Bsp143I GATC 4 cut(s) 3, 234, 975, 1197
Bsp1720I GCTNAGC 1 cut(s) 640
BspACI CCGC 4 cut(s) 76, 100, 303, 1283
BspANI GGCC 6 cut(s) 23, 54, 108, 313, 378, 1371
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 1 cut(s) 1189
BspLI GGNNCC 2 cut(s) 44, 55
BspPI GGATC 1 cut(s) 983
BspT104I TTCGAA 1 cut(s) 264
BspTI CTTAAG 1 cut(s) 1490
BsrFI RCCGGY 2 cut(s) 378, 1371
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 2 cut(s) 378, 1371
BssECI CCNNGG 3 cut(s) 49, 103, 1319
BssMI GATC 4 cut(s) 3, 234, 975, 1197
Bst2UI CCWGG 1 cut(s) 925
Bst4CI ACNGT 5 cut(s) 662, 724, 857, 1268, 1320
Bst6I CTCTTC 1 cut(s) 227
BstAFI CTTAAG 1 cut(s) 1490
BstBAI YACGTR 2 cut(s) 490, 1339
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 8 cut(s) 741, 745, 1059, 1063, 1208, 1255, 1281, 1497
BstDEI CTNAG 2 cut(s) 507, 640
BstDSI CCRYGG 3 cut(s) 49, 103, 1319
BstF5I GGATG 8 cut(s) 213, 477, 484, 766, 880, 1148, 1178, 1384
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 5 cut(s) 334, 646, 749, 907, 1057
BstKTI GATC 4 cut(s) 6, 237, 978, 1200
BstMAI GTCTC 2 cut(s) 148, 510
BstMBI GATC 4 cut(s) 3, 234, 975, 1197
BstMWI GCNNNNNNNGC 1 cut(s) 1289
BstNI CCWGG 1 cut(s) 925
BstNSI RCATGY 3 cut(s) 1050, 1061, 1210
BstSCI CCNGG 2 cut(s) 923, 1432
BstSLI GKGCMC 1 cut(s) 1243
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 3 cut(s) 865, 1213, 1304
BsuI GTATCC 1 cut(s) 774
BsuRI GGCC 6 cut(s) 23, 54, 108, 313, 378, 1371
BtgI CCRYGG 3 cut(s) 49, 103, 1319
BtsCI GGATG 8 cut(s) 213, 477, 484, 766, 880, 1148, 1178, 1384
BtsI GCAGTG 2 cut(s) 653, 1241
BtsIMutI CAGTG 3 cut(s) 653, 667, 1241
Cac8I GCNNGC 8 cut(s) 741, 745, 1059, 1063, 1208, 1255, 1281, 1497
CciI TCATGA 1 cut(s) 1189
CfoI GCGC 5 cut(s) 334, 646, 749, 907, 1057
Cfr10I RCCGGY 2 cut(s) 378, 1371
Cfr13I GGNCC 3 cut(s) 53, 312, 376
CseI GACGC 2 cut(s) 309, 870
Csp6I GTAC 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 1015, 1050
CviAII CATG 7 cut(s) 232, 389, 1047, 1058, 1147, 1190, 1207
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 507, 640
DpnI GATC 4 cut(s) 5, 236, 977, 1199
DpnII GATC 4 cut(s) 3, 234, 975, 1197
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 2 cut(s) 65, 89
Eco57I CTGAAG 1 cut(s) 1199
Eco72I CACGTG 1 cut(s) 490
EcoRI GAATTC 1 cut(s) 1324
EcoRII CCWGG 1 cut(s) 923
EcoT22I ATGCAT 1 cut(s) 1148
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 7 cut(s) 235, 392, 1050, 1061, 1150, 1193, 1210
FalI AAGNNNNNCTT 2 cut(s) 1263, 1295
FaqI GGGAC 2 cut(s) 671, 1412
FatI CATG 7 cut(s) 231, 388, 1046, 1057, 1146, 1189, 1206
FbaI TGATCA 3 cut(s) 3, 234, 1197
Fnu4HI GCNGC 4 cut(s) 304, 879, 1227, 1293
FokI GGATG 8 cut(s) 200, 484, 491, 773, 887, 1155, 1185, 1391
Fsp4HI GCNGC 4 cut(s) 304, 879, 1227, 1293
FspAI RTGCGCAY 1 cut(s) 1056
FspBI CTAG 3 cut(s) 369, 885, 1130
FspI TGCGCA 1 cut(s) 1056
GlaI GCGC 5 cut(s) 333, 645, 748, 906, 1056
GluI GCNGC 4 cut(s) 304, 879, 1227, 1293
HaeIII GGCC 6 cut(s) 23, 54, 108, 313, 378, 1371
HapII CCGG 5 cut(s) 40, 379, 710, 1372, 1434
HgaI GACGC 2 cut(s) 309, 870
HhaI GCGC 5 cut(s) 334, 646, 749, 907, 1057
Hin1II CATG 7 cut(s) 235, 392, 1050, 1061, 1150, 1193, 1210
Hin6I GCGC 5 cut(s) 332, 644, 747, 905, 1055
HinP1I GCGC 5 cut(s) 332, 644, 747, 905, 1055
HindIII AAGCTT 2 cut(s) 666, 1277
HinfI GANTC 3 cut(s) 430, 538, 797
HpaII CCGG 5 cut(s) 40, 379, 710, 1372, 1434
HphI GGTGA 4 cut(s) 611, 977, 1103, 1280
Hpy166II GTNNAC 2 cut(s) 324, 1241
Hpy188I TCNGA 3 cut(s) 289, 510, 1179
Hpy188III TCNNGA 2 cut(s) 1190, 1201
Hpy8I GTNNAC 2 cut(s) 324, 1241
Hpy99I CGWCG 2 cut(s) 303, 320
HpyAV CCTTC 5 cut(s) 271, 1074, 1174, 1361, 1402
HpyCH4III ACNGT 5 cut(s) 662, 724, 857, 1268, 1320
HpyCH4IV ACGT 3 cut(s) 489, 1028, 1338
HpyF10VI GCNNNNNNNGC 1 cut(s) 1289
HpyF3I CTNAG 2 cut(s) 507, 640
HpySE526I ACGT 3 cut(s) 489, 1028, 1338
Hsp92II CATG 7 cut(s) 235, 392, 1050, 1061, 1150, 1193, 1210
HspAI GCGC 5 cut(s) 332, 644, 747, 905, 1055
Ksp22I TGATCA 3 cut(s) 3, 234, 1197
Kzo9I GATC 4 cut(s) 3, 234, 975, 1197
LmnI GCTCC 4 cut(s) 42, 48, 356, 694
Lsp1109I GCAGC 3 cut(s) 865, 1213, 1304
LweI GCATC 5 cut(s) 469, 865, 1012, 1133, 1428
MaeI CTAG 3 cut(s) 369, 885, 1130
MaeII ACGT 3 cut(s) 489, 1028, 1338
MaeIII GTNAC 1 cut(s) 457
MalI GATC 4 cut(s) 5, 236, 977, 1199
MboI GATC 4 cut(s) 3, 234, 975, 1197
MboII GAAGA 3 cut(s) 214, 922, 1376
MhlI GDGCHC 2 cut(s) 39, 1243
MluCI AATT 6 cut(s) 529, 630, 969, 1116, 1324, 1333
MmeI TCCRAC 1 cut(s) 378
Mph1103I ATGCAT 1 cut(s) 1148
MseI TTAA 4 cut(s) 681, 954, 1043, 1491
MslI CAYNNNNRTG 3 cut(s) 789, 1045, 1211
MspCI CTTAAG 1 cut(s) 1490
MspI CCGG 5 cut(s) 40, 379, 710, 1372, 1434
MspR9I CCNGG 2 cut(s) 925, 1434
MvaI CCWGG 1 cut(s) 925
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 1289
NciI CCSGG 1 cut(s) 1434
NdeII GATC 4 cut(s) 3, 234, 975, 1197
NlaIII CATG 7 cut(s) 235, 392, 1050, 1061, 1150, 1193, 1210
NlaIV GGNNCC 2 cut(s) 44, 55
NmuCI GTSAC 1 cut(s) 457
NsbI TGCGCA 1 cut(s) 1056
NsiI ATGCAT 1 cut(s) 1148
NspI RCATGY 3 cut(s) 1050, 1061, 1210
NspV TTCGAA 1 cut(s) 264
PaeI GCATGC 2 cut(s) 1061, 1210
PagI TCATGA 1 cut(s) 1189
PcsI WCGNNNNNNNCGW 1 cut(s) 632
PfeI GAWTC 3 cut(s) 430, 538, 797
PfoI TCCNGGA 1 cut(s) 923
PkrI GCNGC 4 cut(s) 305, 880, 1228, 1294
PmaCI CACGTG 1 cut(s) 490
PmlI CACGTG 1 cut(s) 490
Ppu21I YACGTR 2 cut(s) 490, 1339
Psp6I CCWGG 1 cut(s) 923
PspCI CACGTG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 923
PspN4I GGNNCC 2 cut(s) 44, 55
PspPI GGNCC 3 cut(s) 53, 312, 376
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 3 cut(s) 789, 1045, 1211
SaqAI TTAA 4 cut(s) 681, 954, 1043, 1491
SatI GCNGC 4 cut(s) 304, 879, 1227, 1293
Sau3AI GATC 4 cut(s) 3, 234, 975, 1197
Sau96I GGNCC 3 cut(s) 53, 312, 376
ScrFI CCNGG 2 cut(s) 925, 1434
SduI GDGCHC 2 cut(s) 39, 1243
SfaNI GCATC 5 cut(s) 469, 865, 1012, 1133, 1428
SfuI TTCGAA 1 cut(s) 264
SmiMI CAYNNNNRTG 3 cut(s) 789, 1045, 1211
SmlI CTYRAG 2 cut(s) 341, 1490
SmoI CTYRAG 2 cut(s) 341, 1490
SphI GCATGC 2 cut(s) 1061, 1210
Sse9I AATT 6 cut(s) 529, 630, 969, 1116, 1324, 1333
SsiI CCGC 4 cut(s) 76, 100, 303, 1283
SspI AATATT 1 cut(s) 1354
SspMI CTAG 3 cut(s) 369, 885, 1130
StyD4I CCNGG 2 cut(s) 923, 1432
TaaI ACNGT 5 cut(s) 662, 724, 857, 1268, 1320
TaiI ACGT 3 cut(s) 492, 1031, 1341
TaqI TCGA 8 cut(s) 111, 264, 428, 495, 567, 626, 987, 1486
TaqII GACCGA 1 cut(s) 912
TasI AATT 6 cut(s) 529, 630, 969, 1116, 1324, 1333
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 3 cut(s) 430, 538, 797
Tru1I TTAA 4 cut(s) 681, 954, 1043, 1491
Tru9I TTAA 4 cut(s) 681, 954, 1043, 1491
TscAI CASTG 3 cut(s) 653, 667, 1248
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 3 cut(s) 878, 1226, 1292
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 6 cut(s) 308, 513, 1013, 1229, 1395, 1421
TspGWI ACGGA 2 cut(s) 43, 136
TspRI CASTG 3 cut(s) 653, 667, 1248
Vha464I CTTAAG 1 cut(s) 1490
VneI GTGCAC 1 cut(s) 1239
XapI RAATTY 2 cut(s) 529, 1324
XceI RCATGY 3 cut(s) 1050, 1061, 1210
XspI CTAG 3 cut(s) 369, 885, 1130
Zsp2I ATGCAT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.