Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

6746005 .. 6747036

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGGGATGCACAGCATGTGTTCGATGAAATGTCTCAGAGAGATGTGATTGTTTGGAATTTGATGATTCGTGGGTTTTGCAAGAATGGTAATGTCGATACTGGGTTGTGTTTGTTTAGGCAGATGGGTGAGAGGAATGTTGTTTCTTGGAACTCGATGATTTCGTGCTTAGCGCACTGTGGGAGGGACAGTGAAGCTTTGGGGGTTTTTAATGAGATGAGGGAGCAGAGTTTTGAACCGGACGAGGCTACTGTGGTGTCTGTTTTGCCTGCCTGCGCTCGGTTAGGGGATGTTGATGTTGGGAAATGGATACACTCTTATGCAGATTCTAAAGGACTTCTGCAAGAAGTTGTATCTGTGGGGAACTCGCTTGTGAGTTTTTACTGTAAATGTGGAGATTTGGATGCTGCGGCTAGTGTTTTTGACCGAATGGAGCAGAAGAATGTTGTTTCCTGGAACTCTTTGATTTCAGGGTATGCTTTTAATGGGAGAGGTGAACTTGGGATCAACTTGTTCGAGGAGATGATGAACGCAGATGAGAAACCAAACGATGCCACGTTTGTTGGGGCATTAACATGCTGTGCGCATGCAGGCTTGGTTGAAAAGGGAAGGGATTTGTTTGCTTCAATGACTGAAACTCACCGAATTGAGCCTAAACTAGAGCATTATGGATGCATGGTTGATGTTCTTGGCAGAAGTGGATGTCTGAAGGAGGCTCATGACTTGATCAAGAGCTTGCCTATGATACCAAATGCTGCCTTATGGGGTGCACTGCTTGGTGCTTGCTCTACTCACGAAGAAGGCCGGTGGGATGAAGTTGAGAAAGTCAGGGACTTGATGAAGGAAAACTGCATCACAAAAGCACCAGGACAGAGTGCCATTGGAAAGGATGTTTATGATGAGGAAAAGCAGAGCTATCGACTTAAGCAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

312

Amino Acids

34.38

Weight (kDa)

4.99

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	14 - 47	3.6e-07	PPR repeat family
PPR_1	PF12854	14 - 42	7.1e-07	PPR repeat
PPR	PF01535	18 - 47	2.1e-07	PPR repeat
PPR_2	PF13041	45 - 94	5e-11	PPR repeat family
PPR	PF01535	48 - 76	4e-08	PPR repeat
PPR_2	PF13041	147 - 195	1.8e-10	PPR repeat family
PPR	PF01535	150 - 177	1.1e-06	PPR repeat
E_motif	PF20431	266 - 294	9.2e-06	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	585
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	279
AflII	CTTAAG	1 cut(s)	923
AgsI	TTSAA	3 cut(s)	236, 602, 627
AjnI	CCWGG	2 cut(s)	452, 865
AluBI	AGCT	3 cut(s)	197, 735, 915
AluI	AGCT	3 cut(s)	197, 735, 915
Alw21I	GWGCWC	1 cut(s)	772
Alw26I	GTCTC	1 cut(s)	39
Alw44I	GTGCAC	1 cut(s)	768
AlwI	GGATC	1 cut(s)	512
AoxI	GGCC	1 cut(s)	802
ApaLI	GTGCAC	1 cut(s)	768
ApeKI	GCWGC	2 cut(s)	407, 755
ApoI	RAATTY	1 cut(s)	58
AspLEI	GCGC	3 cut(s)	175, 278, 586
AsuHPI	GGTGA	3 cut(s)	140, 506, 632
BaeGI	GKGCMC	1 cut(s)	772
Bbv12I	GWGCWC	1 cut(s)	772
BbvI	GCAGC	2 cut(s)	394, 742
BccI	CCATC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	899, 933
BciT130I	CCWGG	2 cut(s)	454, 867
BciVI	GTATCC	1 cut(s)	303
BclI	TGATCA	1 cut(s)	726
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	2 cut(s)	414, 659
BfrI	CTTAAG	1 cut(s)	923
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	3 cut(s)	408, 411, 756
BlpI	GCTNAGC	1 cut(s)	169
BlsI	GCNGC	3 cut(s)	409, 412, 757
Bme1390I	CCNGG	2 cut(s)	454, 867
BmrFI	CCNGG	2 cut(s)	454, 867
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	4 cut(s)	394, 541, 662, 861
BmuI	ACTGGG	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	1 cut(s)	804
Bse1I	ACTGG	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	454, 867
BseGI	GGATG	7 cut(s)	13, 295, 409, 677, 707, 817, 895
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	533
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	2 cut(s)	394, 742
BshFI	GGCC	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	772
BsiSI	CCGG	2 cut(s)	239, 805
BslFI	GGGAC	2 cut(s)	200, 845
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	200, 845
BsnI	GGCC	1 cut(s)	804
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp143I	GATC	2 cut(s)	504, 726
Bsp1720I	GCTNAGC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	1 cut(s)	804
BspCNI	CTCAG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	718
BspPI	GGATC	1 cut(s)	512
BspTI	CTTAAG	1 cut(s)	923
BsrFI	RCCGGY	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	804
BssMI	GATC	2 cut(s)	504, 726
Bst2UI	CCWGG	2 cut(s)	454, 867
Bst4CI	ACNGT	4 cut(s)	179, 191, 253, 386
BstAFI	CTTAAG	1 cut(s)	923
BstC8I	GCNNGC	7 cut(s)	270, 274, 588, 592, 737, 784, 930
BstDEI	CTNAG	2 cut(s)	36, 169
BstF5I	GGATG	7 cut(s)	13, 295, 409, 677, 707, 817, 895
BstHHI	GCGC	3 cut(s)	175, 278, 586
BstKTI	GATC	2 cut(s)	507, 729
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	504, 726
BstNI	CCWGG	2 cut(s)	454, 867
BstNSI	RCATGY	3 cut(s)	20, 579, 590
BstSCI	CCNGG	2 cut(s)	452, 865
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	2 cut(s)	394, 742
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	804
BtsCI	GGATG	7 cut(s)	13, 295, 409, 677, 707, 817, 895
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	3 cut(s)	175, 196, 770
Cac8I	GCNNGC	7 cut(s)	270, 274, 588, 592, 737, 784, 930
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	3 cut(s)	175, 278, 586
Cfr10I	RCCGGY	1 cut(s)	804
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	5 cut(s)	17, 576, 587, 676, 719
DdeI	CTNAG	2 cut(s)	36, 169
DpnI	GATC	2 cut(s)	506, 728
DpnII	GATC	2 cut(s)	504, 726
Eco57I	CTGAAG	1 cut(s)	728
EcoRII	CCWGG	2 cut(s)	452, 865
EcoT22I	ATGCAT	1 cut(s)	677
FaeI	CATG	5 cut(s)	20, 579, 590, 679, 722
FaqI	GGGAC	2 cut(s)	200, 845
FatI	CATG	5 cut(s)	16, 575, 586, 675, 718
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	3 cut(s)	408, 411, 756
FokI	GGATG	7 cut(s)	20, 302, 416, 684, 714, 824, 902
Fsp4HI	GCNGC	3 cut(s)	408, 411, 756
FspAI	RTGCGCAY	1 cut(s)	585
FspBI	CTAG	2 cut(s)	414, 659
FspI	TGCGCA	1 cut(s)	585
GlaI	GCGC	3 cut(s)	174, 277, 585
GluI	GCNGC	3 cut(s)	408, 411, 756
HaeIII	GGCC	1 cut(s)	804
HapII	CCGG	2 cut(s)	239, 805
HhaI	GCGC	3 cut(s)	175, 278, 586
Hin1II	CATG	5 cut(s)	20, 579, 590, 679, 722
Hin6I	GCGC	3 cut(s)	173, 276, 584
HinP1I	GCGC	3 cut(s)	173, 276, 584
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	2 cut(s)	67, 326
HpaII	CCGG	2 cut(s)	239, 805
HphI	GGTGA	3 cut(s)	140, 506, 632
Hpy166II	GTNNAC	2 cut(s)	497, 770
Hpy188I	TCNGA	2 cut(s)	39, 708
Hpy188III	TCNNGA	3 cut(s)	719, 730, 794
Hpy8I	GTNNAC	2 cut(s)	497, 770
HpyAV	CCTTC	4 cut(s)	603, 703, 794, 835
HpyCH4III	ACNGT	4 cut(s)	179, 191, 253, 386
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	8 cut(s)	11, 81, 323, 343, 590, 675, 770, 852
HpyF3I	CTNAG	2 cut(s)	36, 169
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	5 cut(s)	20, 579, 590, 679, 722
HspAI	GCGC	3 cut(s)	173, 276, 584
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	2 cut(s)	504, 726
LmnI	GCTCC	2 cut(s)	223, 433
Lsp1109I	GCAGC	2 cut(s)	394, 742
LweI	GCATC	4 cut(s)	394, 541, 662, 861
MaeI	CTAG	2 cut(s)	414, 659
MaeII	ACGT	1 cut(s)	557
MalI	GATC	2 cut(s)	506, 728
MboI	GATC	2 cut(s)	504, 726
MboII	GAAGA	2 cut(s)	451, 809
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	2 cut(s)	58, 645
MnlI	CCTC	8 cut(s)	126, 177, 213, 238, 485, 511, 706, 895
Mph1103I	ATGCAT	1 cut(s)	677
MseI	TTAA	4 cut(s)	210, 483, 572, 924
MslI	CAYNNNNRTG	2 cut(s)	318, 574
MspCI	CTTAAG	1 cut(s)	923
MspI	CCGG	2 cut(s)	239, 805
MspR9I	CCNGG	2 cut(s)	454, 867
MvaI	CCWGG	2 cut(s)	454, 867
NdeII	GATC	2 cut(s)	504, 726
NlaIII	CATG	5 cut(s)	20, 579, 590, 679, 722
NsbI	TGCGCA	1 cut(s)	585
NsiI	ATGCAT	1 cut(s)	677
NspI	RCATGY	3 cut(s)	20, 579, 590
PaeI	GCATGC	1 cut(s)	590
PagI	TCATGA	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	67, 326
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	3 cut(s)	409, 412, 757
Psp6I	CCWGG	2 cut(s)	452, 865
PspGI	CCWGG	2 cut(s)	452, 865
RseI	CAYNNNNRTG	2 cut(s)	318, 574
SaqAI	TTAA	4 cut(s)	210, 483, 572, 924
SatI	GCNGC	3 cut(s)	408, 411, 756
Sau3AI	GATC	2 cut(s)	504, 726
ScrFI	CCNGG	2 cut(s)	454, 867
SduI	GDGCHC	1 cut(s)	772
SetI	ASST	5 cut(s)	199, 496, 560, 737, 917
SfaNI	GCATC	4 cut(s)	394, 541, 662, 861
SmiMI	CAYNNNNRTG	2 cut(s)	318, 574
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
SphI	GCATGC	1 cut(s)	590
Sse9I	AATT	2 cut(s)	58, 645
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	2 cut(s)	414, 659
StyD4I	CCNGG	2 cut(s)	452, 865
TaaI	ACNGT	4 cut(s)	179, 191, 253, 386
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	5 cut(s)	24, 96, 155, 516, 919
TaqII	GACCGA	1 cut(s)	441
TasI	AATT	2 cut(s)	58, 645
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	67, 326
Tru1I	TTAA	4 cut(s)	210, 483, 572, 924
Tru9I	TTAA	4 cut(s)	210, 483, 572, 924
TscAI	CASTG	3 cut(s)	182, 196, 777
TseI	GCWGC	2 cut(s)	407, 755
TspDTI	ATGAA	4 cut(s)	42, 542, 828, 854
TspRI	CASTG	3 cut(s)	182, 196, 777
Vha464I	CTTAAG	1 cut(s)	923
VneI	GTGCAC	1 cut(s)	768
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	3 cut(s)	20, 579, 590
XspI	CTAG	2 cut(s)	414, 659
Zsp2I	ATGCAT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.