Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001989.1

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

15909 .. 16457

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001989.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgattcatgggttttgcaagagtggcaatgtcgatactgggttgtgcttgttttggaagatgggtgagaggaatgttgttttgtggaactcgatgatttcgtgcttagcgcagtgtgggagggacagtgaagctttggggttttttaatgagacatgggagcagggttttgaaccggatgaggctattgtggtgtcggttttgcctacgtgtgttcggttaggggatgttgatgatgggaaatggatacactcttatgcagattctaaagggcttctgcaagaagttgtgtctctggggaactcgcttgtgcgtatttactgtaaacgtggagatttggatgttgcgtctagtgtttttgaacaaatggcccgtaaggatgttgtttcctggaactctttgatttcggggtatgcgtttaatgggagaggtgtacttgggatcaacttgttcgaggagatgatgcacattatgcaccatggaacaatatttattttgatggagagggtacttaacccatttgatcaggttccaaagaaaatggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

182

Amino Acids

20.46

Weight (kDa)

5.19

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	449
AfaI	GTAC	2 cut(s)	435, 510
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	173, 362
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	2 cut(s)	146, 297
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	77
BccI	CCATC	3 cut(s)	55, 230, 493
BciT130I	CCWGG	1 cut(s)	391
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	146, 297
BfaI	CTAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	240
BlpI	GCTNAGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	391
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	478
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	4 cut(s)	184, 232, 346, 385
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	470
BshFI	GGCC	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	146, 297
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	441, 523
Bsp1720I	GCTNAGC	1 cut(s)	106
Bsp19I	CCATGG	1 cut(s)	478
BspANI	GGCC	1 cut(s)	371
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	2 cut(s)	441, 523
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	128, 323
BstAPI	GCANNNNNTGC	1 cut(s)	472
BstBAI	YACGTR	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	4 cut(s)	184, 232, 346, 385
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	444, 526
BstMAI	GTCTC	2 cut(s)	146, 297
BstMBI	GATC	2 cut(s)	441, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 472
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	4 cut(s)	184, 232, 346, 385
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	119, 133
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	434, 509
CviAII	CATG	3 cut(s)	8, 156, 479
CviJI	RGCY	4 cut(s)	134, 185, 274, 371
CviKI_1	RGCY	4 cut(s)	134, 185, 274, 371
CviQI	GTAC	2 cut(s)	434, 509
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	443, 525
DpnII	GATC	2 cut(s)	441, 523
Eco130I	CCWWGG	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	3 cut(s)	11, 159, 482
FaiI	YATR	6 cut(s)	9, 157, 258, 414, 473, 480
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	3 cut(s)	7, 155, 478
FbaI	TGATCA	1 cut(s)	523
FokI	GGATG	4 cut(s)	191, 239, 353, 392
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	11, 159, 482
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	2 cut(s)	4, 263
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	326, 434
Hpy8I	GTNNAC	2 cut(s)	326, 434
HpyCH4III	ACNGT	2 cut(s)	128, 323
HpyCH4IV	ACGT	2 cut(s)	209, 328
HpyCH4V	TGCA	5 cut(s)	18, 260, 280, 466, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 472
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	2 cut(s)	209, 328
Hsp92II	CATG	3 cut(s)	11, 159, 482
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	441, 523
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	24, 149, 189, 281, 376, 403, 512
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	209, 328
MalI	GATC	2 cut(s)	443, 525
MboI	GATC	2 cut(s)	441, 523
MboII	GAAGA	1 cut(s)	70
MnlI	CCTC	6 cut(s)	63, 114, 175, 422, 448, 498
MseI	TTAA	3 cut(s)	147, 420, 513
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	24, 472
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	2 cut(s)	441, 523
NlaIII	CATG	3 cut(s)	11, 159, 482
NlaIV	GGNNCC	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 413
PfeI	GAWTC	2 cut(s)	4, 263
PfoI	TCCNGGA	1 cut(s)	389
Ppu21I	YACGTR	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	370
RsaI	GTAC	2 cut(s)	435, 510
RsaNI	GTAC	2 cut(s)	434, 509
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	147, 420, 513
Sau3AI	GATC	2 cut(s)	441, 523
Sau96I	GGNCC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	391
SetI	ASST	5 cut(s)	136, 212, 331, 433, 531
SfaNI	GCATC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	255
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	2 cut(s)	128, 323
TaiI	ACGT	2 cut(s)	212, 331
TaqI	TCGA	3 cut(s)	33, 92, 453
TatI	WGTACW	1 cut(s)	433
TfiI	GAWTC	2 cut(s)	4, 263
Tru1I	TTAA	3 cut(s)	147, 420, 513
Tru9I	TTAA	3 cut(s)	147, 420, 513
TscAI	CASTG	2 cut(s)	119, 133
TspRI	CASTG	2 cut(s)	119, 133
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.