Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09190 |
| fragaria_vesca | FvH4_1g08040 |
| malus_domestica | MD02G1085000.v1.1 |
| prunus_persica | Prupe.7G204600_v2.0.a1 |
| pyrus_communis | pycom02g06780 pycom02g20400 |
| rosa_chinensis | RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681 |
| rosa_laevigata | RLG00000016453 RLG00000016978 RLG00000028565 |
| rosa_multiflora | Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00065660 Rroxscaffold_2G00147500 |
| rosa_rugosa | Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800 |
| rosa_samantha | Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 541 |
| AclWI | GGATC | 2 cut(s) | 44, 533 |
| AcsI | RAATTY | 1 cut(s) | 124 |
| AfaI | GTAC | 2 cut(s) | 519, 555 |
| AgsI | TTSAA | 3 cut(s) | 302, 446, 538 |
| AjnI | CCWGG | 2 cut(s) | 455, 473 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 404, 436 |
| AluBI | AGCT | 2 cut(s) | 46, 263 |
| AluI | AGCT | 2 cut(s) | 46, 263 |
| Alw26I | GTCTC | 1 cut(s) | 275 |
| AlwI | GGATC | 2 cut(s) | 44, 533 |
| AoxI | GGCC | 1 cut(s) | 453 |
| ApoI | RAATTY | 1 cut(s) | 124 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 86 |
| AspLEI | GCGC | 1 cut(s) | 241 |
| AsuHPI | GGTGA | 2 cut(s) | 83, 206 |
| BccI | CCATC | 2 cut(s) | 184, 359 |
| BciT130I | CCWGG | 2 cut(s) | 457, 475 |
| BclI | TGATCA | 1 cut(s) | 568 |
| BcoDI | GTCTC | 1 cut(s) | 275 |
| BfaI | CTAG | 1 cut(s) | 435 |
| BfuAI | ACCTGC | 1 cut(s) | 541 |
| BlpI | GCTNAGC | 1 cut(s) | 235 |
| Bme1390I | CCNGG | 2 cut(s) | 457, 475 |
| BmrFI | CCNGG | 2 cut(s) | 457, 475 |
| BmrI | ACTGGG | 1 cut(s) | 177 |
| BmsI | GCATC | 3 cut(s) | 64, 440, 537 |
| BmuI | ACTGGG | 1 cut(s) | 177 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 235 |
| BsaWI | WCCGGW | 1 cut(s) | 304 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 55, 85, 241, 271 |
| Bse1I | ACTGG | 1 cut(s) | 172 |
| Bse3DI | GCAATG | 2 cut(s) | 163, 248 |
| BseBI | CCWGG | 2 cut(s) | 457, 475 |
| BseGI | GGATG | 3 cut(s) | 313, 361, 430 |
| BseMI | GCAATG | 2 cut(s) | 163, 248 |
| BseNI | ACTGG | 1 cut(s) | 172 |
| BshFI | GGCC | 1 cut(s) | 455 |
| BsiSI | CCGG | 1 cut(s) | 305 |
| BslFI | GGGAC | 1 cut(s) | 266 |
| BsmAI | GTCTC | 1 cut(s) | 275 |
| BsmFI | GGGAC | 1 cut(s) | 266 |
| BsnI | GGCC | 1 cut(s) | 455 |
| Bsp143I | GATC | 3 cut(s) | 36, 525, 568 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 235 |
| BspANI | GGCC | 1 cut(s) | 455 |
| BspMI | ACCTGC | 1 cut(s) | 541 |
| BspPI | GGATC | 2 cut(s) | 44, 533 |
| BsrDI | GCAATG | 2 cut(s) | 163, 248 |
| BsrI | ACTGG | 1 cut(s) | 172 |
| BssMI | GATC | 3 cut(s) | 36, 525, 568 |
| Bst2UI | CCWGG | 2 cut(s) | 457, 475 |
| Bst4CI | ACNGT | 2 cut(s) | 257, 319 |
| BstC8I | GCNNGC | 2 cut(s) | 336, 340 |
| BstDEI | CTNAG | 1 cut(s) | 235 |
| BstF5I | GGATG | 3 cut(s) | 313, 361, 430 |
| BstHHI | GCGC | 1 cut(s) | 241 |
| BstKTI | GATC | 3 cut(s) | 39, 528, 571 |
| BstMAI | GTCTC | 1 cut(s) | 275 |
| BstMBI | GATC | 3 cut(s) | 36, 525, 568 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 153 |
| BstNI | CCWGG | 2 cut(s) | 457, 475 |
| BstSCI | CCNGG | 2 cut(s) | 455, 473 |
| BsuRI | GGCC | 1 cut(s) | 455 |
| BtsCI | GGATG | 3 cut(s) | 313, 361, 430 |
| BtsIMutI | CAGTG | 1 cut(s) | 262 |
| BveI | ACCTGC | 1 cut(s) | 541 |
| Cac8I | GCNNGC | 2 cut(s) | 336, 340 |
| CfoI | GCGC | 1 cut(s) | 241 |
| Csp6I | GTAC | 2 cut(s) | 518, 554 |
| CviAII | CATG | 1 cut(s) | 285 |
| CviJI | RGCY | 4 cut(s) | 46, 263, 314, 455 |
| CviKI_1 | RGCY | 4 cut(s) | 46, 263, 314, 455 |
| CviQI | GTAC | 2 cut(s) | 518, 554 |
| DdeI | CTNAG | 1 cut(s) | 235 |
| DpnI | GATC | 3 cut(s) | 38, 527, 570 |
| DpnII | GATC | 3 cut(s) | 36, 525, 568 |
| EcoRII | CCWGG | 2 cut(s) | 455, 473 |
| EcoT22I | ATGCAT | 1 cut(s) | 502 |
| FaeI | CATG | 1 cut(s) | 288 |
| FaiI | YATR | 6 cut(s) | 51, 286, 379, 387, 498, 573 |
| FaqI | GGGAC | 1 cut(s) | 266 |
| FatI | CATG | 1 cut(s) | 284 |
| FbaI | TGATCA | 1 cut(s) | 568 |
| FokI | GGATG | 3 cut(s) | 320, 368, 437 |
| FspBI | CTAG | 1 cut(s) | 435 |
| GlaI | GCGC | 1 cut(s) | 240 |
| HaeIII | GGCC | 1 cut(s) | 455 |
| HapII | CCGG | 1 cut(s) | 305 |
| HhaI | GCGC | 1 cut(s) | 241 |
| Hin1II | CATG | 1 cut(s) | 288 |
| Hin6I | GCGC | 1 cut(s) | 239 |
| HinP1I | GCGC | 1 cut(s) | 239 |
| HindIII | AAGCTT | 1 cut(s) | 261 |
| HinfI | GANTC | 2 cut(s) | 133, 392 |
| HpaII | CCGG | 1 cut(s) | 305 |
| HphI | GGTGA | 2 cut(s) | 83, 206 |
| Hpy166II | GTNNAC | 1 cut(s) | 518 |
| Hpy8I | GTNNAC | 1 cut(s) | 518 |
| HpyAV | CCTTC | 3 cut(s) | 76, 454, 532 |
| HpyCH4III | ACNGT | 2 cut(s) | 257, 319 |
| HpyCH4V | TGCA | 7 cut(s) | 77, 147, 389, 408, 431, 500, 550 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 153 |
| HpyF3I | CTNAG | 1 cut(s) | 235 |
| Hsp92II | CATG | 1 cut(s) | 288 |
| HspAI | GCGC | 1 cut(s) | 239 |
| Ksp22I | TGATCA | 1 cut(s) | 568 |
| Kzo9I | GATC | 3 cut(s) | 36, 525, 568 |
| LmnI | GCTCC | 1 cut(s) | 289 |
| LpnPI | CCDG | 8 cut(s) | 153, 318, 348, 442, 460, 469, 487, 536 |
| LweI | GCATC | 3 cut(s) | 64, 440, 537 |
| MaeI | CTAG | 1 cut(s) | 435 |
| MaeIII | GTNAC | 1 cut(s) | 52 |
| MalI | GATC | 3 cut(s) | 38, 527, 570 |
| MboI | GATC | 3 cut(s) | 36, 525, 568 |
| MboII | GAAGA | 1 cut(s) | 199 |
| MluCI | AATT | 1 cut(s) | 124 |
| MnlI | CCTC | 5 cut(s) | 57, 192, 243, 304, 506 |
| Mph1103I | ATGCAT | 1 cut(s) | 502 |
| MroXI | GAANNNNTTC | 1 cut(s) | 86 |
| MseI | TTAA | 3 cut(s) | 276, 504, 558 |
| MspI | CCGG | 1 cut(s) | 305 |
| MspR9I | CCNGG | 2 cut(s) | 457, 475 |
| MvaI | CCWGG | 2 cut(s) | 457, 475 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 153 |
| NdeII | GATC | 3 cut(s) | 36, 525, 568 |
| NlaIII | CATG | 1 cut(s) | 288 |
| NmuCI | GTSAC | 1 cut(s) | 52 |
| NsiI | ATGCAT | 1 cut(s) | 502 |
| PdmI | GAANNNNTTC | 1 cut(s) | 86 |
| PfeI | GAWTC | 2 cut(s) | 133, 392 |
| PfoI | TCCNGGA | 1 cut(s) | 473 |
| Psp6I | CCWGG | 2 cut(s) | 455, 473 |
| PspGI | CCWGG | 2 cut(s) | 455, 473 |
| RsaI | GTAC | 2 cut(s) | 519, 555 |
| RsaNI | GTAC | 2 cut(s) | 518, 554 |
| SaqAI | TTAA | 3 cut(s) | 276, 504, 558 |
| Sau3AI | GATC | 3 cut(s) | 36, 525, 568 |
| ScrFI | CCNGG | 2 cut(s) | 457, 475 |
| SetI | ASST | 6 cut(s) | 48, 87, 265, 298, 517, 555 |
| SfaNI | GCATC | 3 cut(s) | 64, 440, 537 |
| Sse9I | AATT | 1 cut(s) | 124 |
| SspMI | CTAG | 1 cut(s) | 435 |
| StyD4I | CCNGG | 2 cut(s) | 455, 473 |
| TaaI | ACNGT | 2 cut(s) | 257, 319 |
| TaqI | TCGA | 2 cut(s) | 90, 162 |
| TasI | AATT | 1 cut(s) | 124 |
| TatI | WGTACW | 1 cut(s) | 517 |
| TfiI | GAWTC | 2 cut(s) | 133, 392 |
| Tru1I | TTAA | 3 cut(s) | 276, 504, 558 |
| Tru9I | TTAA | 3 cut(s) | 276, 504, 558 |
| TscAI | CASTG | 1 cut(s) | 262 |
| TseFI | GTSAC | 1 cut(s) | 52 |
| Tsp45I | GTSAC | 1 cut(s) | 52 |
| TspDTI | ATGAA | 1 cut(s) | 108 |
| TspRI | CASTG | 1 cut(s) | 262 |
| XapI | RAATTY | 1 cut(s) | 124 |
| XmnI | GAANNNNTTC | 1 cut(s) | 86 |
| XspI | CTAG | 1 cut(s) | 435 |
| Zsp2I | ATGCAT | 1 cut(s) | 502 |