Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

7089178 .. 7089821

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0088700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGTTGGGGGCAGATCTTTTGAGTAGAGCTGCGGCCATTGAAGCTCTGCATGCCTATCCTGGTGGGTTAATTTCTAGGATTGCGAGGTTTAGGGAAACTGATATCAAAGAGGTGCCAACTTTTGCAAAAGGATCAGATTTCTCATTATTCATTGCACATGCTGAGATTAGTATAAACCTTGACTGGTATAATCTAGGTGGTTTGCAGGTAGGAGGTGGGATCAATTCAGATAATTCTTTGCAATACATAGAAGAAGGGGCTAGCCACGTCATTGTCACTTCTGTGAGTTCTGTTTTTCTCCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

115

Amino Acids

12.36

Weight (kDa)

4.96

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	151
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	178, 266
AcoI	YGGCCR	2 cut(s)	28, 72
AgsI	TTSAA	1 cut(s)	80
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	97
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	68, 83
AluI	AGCT	2 cut(s)	68, 83
AlwI	GGATC	2 cut(s)	178, 266
AoxI	GGCC	2 cut(s)	28, 72
ApeKI	GCWGC	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	99
BfaI	CTAG	3 cut(s)	114, 233, 300
BfuAI	ACCTGC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	2 cut(s)	69, 72
BlsI	GCNGC	2 cut(s)	70, 73
Bme1390I	CCNGG	1 cut(s)	99
BmgBI	CACGTC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	99
BmtI	GCTAGC	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	30, 74
BshNI	GGYRCC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	30, 74
Bsp143I	GATC	3 cut(s)	52, 170, 258
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	30, 74
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	235
BspOI	GCTAGC	1 cut(s)	303
BspPI	GGATC	2 cut(s)	178, 266
BspT107I	GGYRCC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	3 cut(s)	52, 170, 258
Bst2UI	CCWGG	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	90, 301
BstDEI	CTNAG	1 cut(s)	201
BstKTI	GATC	3 cut(s)	55, 173, 261
BstMBI	GATC	3 cut(s)	52, 170, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 89
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	2 cut(s)	92, 200
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	30, 74
BtrI	CACGTC	1 cut(s)	307
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	90, 301
CviAII	CATG	3 cut(s)	32, 89, 197
CviJI	RGCY	7 cut(s)	19, 30, 68, 74, 83, 299, 303
CviKI_1	RGCY	7 cut(s)	19, 30, 68, 74, 83, 299, 303
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	3 cut(s)	54, 172, 260
DpnII	GATC	3 cut(s)	52, 170, 258
EaeI	YGGCCR	2 cut(s)	28, 72
Eco32I	GATATC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	142
FaeI	CATG	3 cut(s)	35, 92, 200
FaiI	YATR	7 cut(s)	6, 33, 90, 198, 212, 228, 287
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	3 cut(s)	31, 88, 196
Fnu4HI	GCNGC	2 cut(s)	69, 72
Fsp4HI	GCNGC	2 cut(s)	69, 72
FspBI	CTAG	3 cut(s)	114, 233, 300
GluI	GCNGC	2 cut(s)	69, 72
HaeIII	GGCC	2 cut(s)	30, 74
Hin1II	CATG	3 cut(s)	35, 92, 200
Hpy188I	TCNGA	2 cut(s)	175, 268
HpyAV	CCTTC	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	5 cut(s)	88, 164, 194, 244, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 89
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	35, 92, 200
Kzo9I	GATC	3 cut(s)	52, 170, 258
LpnPI	CCDG	5 cut(s)	9, 84, 111, 208, 230
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	3 cut(s)	114, 233, 300
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	54, 172, 260
MboI	GATC	3 cut(s)	52, 170, 258
MboII	GAAGA	3 cut(s)	23, 302, 334
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	3 cut(s)	108, 262, 271
MluNI	TGGCCA	1 cut(s)	30
MnlI	CCTC	3 cut(s)	117, 142, 245
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	80, 89
NdeII	GATC	3 cut(s)	52, 170, 258
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	3 cut(s)	35, 92, 200
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	2 cut(s)	92, 200
OliI	CACNNNNGTG	1 cut(s)	320
PaeI	GCATGC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	70, 73
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	2 cut(s)	69, 72
Sau3AI	GATC	3 cut(s)	52, 170, 258
ScrFI	CCNGG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	320
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	3 cut(s)	108, 262, 271
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	3 cut(s)	114, 233, 300
StyD4I	CCNGG	1 cut(s)	97
TaiI	ACGT	1 cut(s)	309
TasI	AATT	3 cut(s)	108, 262, 271
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	178
XceI	RCATGY	2 cut(s)	92, 200
XspI	CTAG	3 cut(s)	114, 233, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.