Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010460.1

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Reverse (-)

15308 .. 16571

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010460.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggatctcaggacctctcctccctccgatgccgttaaaaactcgtctttccttcaacccaatcgcttctgcaaaacccaccaattcttctgggttcgtggtattagtcatgtcaacctcttggtctcggcatttgcaccaaactcggcctcggtgccccatccctcttctcacctcccgatctcgaattcaatttcaagcggcaccctcggcacgtctggatctcgggttgggatcattgagctgtatgtgacttgtgggagggtgggtgatgcacagaaggtgttcgatgaaatgtctaaaagagatgtgattgtttggaatttgatgattcttgggttttgcaagagtggcaatgtcgatactggtgaagctttggggttttttaatgagacatgggagcagggttttgaacagaatgaggcaactgtggtgtcggttttgcctgcgtacgttcgctttagggatgttgatgatgggaaatggatacactcttatgcagattctaaaggtgtttttgaacgaatggcccggaaggatgttgtttcctggaactctttgatttcggggtatgcatttaatgggagaggtgtacttgggatcaacttgttcaaggagatgatgcaggtacttaacccatttgatcaggttccaaagaaaatggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

222

Amino Acids

24.68

Weight (kDa)

6.96

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	616
AccB1I	GGYRCC	2 cut(s)	154, 203
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	4 cut(s)	12, 229, 242, 608
AcsI	RAATTY	2 cut(s)	187, 322
AfaI	GTAC	3 cut(s)	452, 594, 630
AgsI	TTSAA	6 cut(s)	56, 192, 198, 413, 521, 613
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	2 cut(s)	244, 374
AluI	AGCT	2 cut(s)	244, 374
Alw26I	GTCTC	2 cut(s)	130, 386
AlwI	GGATC	4 cut(s)	12, 229, 242, 608
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	2 cut(s)	147, 528
ApoI	RAATTY	2 cut(s)	187, 322
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	12, 529
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	3 cut(s)	164, 281, 380
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	12
BaeGI	GKGCMC	1 cut(s)	159
BanI	GGYRCC	2 cut(s)	154, 203
BccI	CCATC	2 cut(s)	168, 470
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BciT130I	CCWGG	1 cut(s)	550
BciVI	GTATCC	1 cut(s)	480
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	2 cut(s)	130, 386
BfuAI	ACCTGC	1 cut(s)	616
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	532, 550
Bme18I	GGWCC	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	225
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	2 cut(s)	12, 529
BmiI	GGNNCC	3 cut(s)	156, 205, 651
BmrFI	CCNGG	2 cut(s)	532, 550
BmsI	GCATC	3 cut(s)	19, 262, 612
BpuMI	CCSGG	1 cut(s)	532
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	150, 208
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 253, 283
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	2 cut(s)	150, 208
BseGI	GGATG	3 cut(s)	160, 472, 544
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	159
BshFI	GGCC	2 cut(s)	149, 530
BshNI	GGYRCC	2 cut(s)	154, 203
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	532
BsiWI	CGTACG	1 cut(s)	450
BsmAI	GTCTC	2 cut(s)	130, 386
BsnI	GGCC	2 cut(s)	149, 530
Bso31I	GGTCTC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	6 cut(s)	4, 180, 221, 234, 600, 643
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	149, 530
BspCNI	CTCAG	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	156, 205, 651
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	4 cut(s)	12, 229, 242, 608
BspT107I	GGYRCC	2 cut(s)	154, 203
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	150, 208
BssMI	GATC	6 cut(s)	4, 180, 221, 234, 600, 643
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	160, 472, 544
BstKTI	GATC	6 cut(s)	7, 183, 224, 237, 603, 646
BstMAI	GTCTC	2 cut(s)	130, 386
BstMBI	GATC	6 cut(s)	4, 180, 221, 234, 600, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 351
BstNI	CCWGG	1 cut(s)	550
BstSCI	CCNGG	2 cut(s)	530, 548
BstSLI	GKGCMC	1 cut(s)	159
BstX2I	RGATCY	2 cut(s)	4, 221
BstYI	RGATCY	2 cut(s)	4, 221
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	149, 530
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	160, 472, 544
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	447
Cfr13I	GGNCC	2 cut(s)	12, 529
Csp6I	GTAC	3 cut(s)	451, 593, 629
CviAII	CATG	2 cut(s)	110, 396
CviJI	RGCY	4 cut(s)	149, 244, 374, 530
CviKI_1	RGCY	4 cut(s)	149, 244, 374, 530
CviQI	GTAC	3 cut(s)	451, 593, 629
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	6 cut(s)	6, 182, 223, 236, 602, 645
DpnII	GATC	6 cut(s)	4, 180, 221, 234, 600, 643
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	548
EcoT22I	ATGCAT	1 cut(s)	577
FaeI	CATG	2 cut(s)	113, 399
FaiI	YATR	5 cut(s)	111, 249, 397, 498, 573
FatI	CATG	2 cut(s)	109, 395
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	3 cut(s)	147, 479, 551
Fsp4HI	GCNGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	149, 530
HapII	CCGG	1 cut(s)	532
Hin1II	CATG	2 cut(s)	113, 399
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	2 cut(s)	331, 503
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	3 cut(s)	164, 281, 380
Hpy166II	GTNNAC	2 cut(s)	115, 593
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	4 cut(s)	10, 178, 184, 219
Hpy8I	GTNNAC	2 cut(s)	115, 593
HpyAV	CCTTC	3 cut(s)	62, 274, 529
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	2 cut(s)	215, 453
HpyCH4V	TGCA	7 cut(s)	72, 137, 275, 345, 500, 575, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 351
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	2 cut(s)	215, 453
Hsp92II	CATG	2 cut(s)	113, 399
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	6 cut(s)	4, 180, 221, 234, 600, 643
LmnI	GCTCC	1 cut(s)	400
LweI	GCATC	3 cut(s)	19, 262, 612
MaeII	ACGT	2 cut(s)	215, 453
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	6 cut(s)	6, 182, 223, 236, 602, 645
MboI	GATC	6 cut(s)	4, 180, 221, 234, 600, 643
MboII	GAAGA	2 cut(s)	79, 159
MflI	RGATCY	2 cut(s)	4, 221
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	83, 187, 192, 322
Mph1103I	ATGCAT	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	4 cut(s)	36, 387, 579, 633
MslI	CAYNNNNRTG	1 cut(s)	495
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	532, 550
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	2 cut(s)	210, 351
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	6 cut(s)	4, 180, 221, 234, 600, 643
NlaIII	CATG	2 cut(s)	113, 399
NlaIV	GGNNCC	3 cut(s)	156, 205, 651
NmeAIII	GCCGAG	3 cut(s)	107, 125, 189
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	331, 503
Pfl23II	CGTACG	1 cut(s)	450
PfoI	TCCNGGA	1 cut(s)	548
PkrI	GCNGC	1 cut(s)	203
PpuMI	RGGWCCY	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspLI	CGTACG	1 cut(s)	450
PspN4I	GGNNCC	3 cut(s)	156, 205, 651
PspPI	GGNCC	2 cut(s)	12, 529
PspPPI	RGGWCCY	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	4, 221
RsaI	GTAC	3 cut(s)	452, 594, 630
RsaNI	GTAC	3 cut(s)	451, 593, 629
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	36, 387, 579, 633
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	6 cut(s)	4, 180, 221, 234, 600, 643
Sau96I	GGNCC	2 cut(s)	12, 529
ScrFI	CCNGG	2 cut(s)	532, 550
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	3 cut(s)	19, 262, 612
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	4 cut(s)	83, 187, 192, 322
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	530, 548
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	2 cut(s)	218, 456
TaqI	TCGA	3 cut(s)	185, 288, 360
TasI	AATT	4 cut(s)	83, 187, 192, 322
TatI	WGTACW	1 cut(s)	592
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	331, 503
Tru1I	TTAA	4 cut(s)	36, 387, 579, 633
Tru9I	TTAA	4 cut(s)	36, 387, 579, 633
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	2 cut(s)	187, 322
XmnI	GAANNNNTTC	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.