Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002518

Physical Location & Seq

Genomic Coordinates Forward (+)

6677723 .. 6678429

Gene Structure 707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1085000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGCAGAGCATGCCGTGAGGCGGAGCGGCGAGTCCTCCGCCTCCTCCATGGCCACAAAACCCGAACCCATCTCCGCCAGATCCACGCCCACCTCCTCCGCCATGGCCTTGGCCAAGTCAATCAAGTCCTCGCCCACTTCGTCTCCGTTTGTTGGTCACTCAACAAAATGAGCTACGCAAGTCGCATTTTCAATCAAACCCACAACCCCAACATCCTCTTCTTTAATTCCATGGTCAAAGGATTCTCACTCTGCAAACCCTTCGAACAATCCCTATACATCTTCTCTCTCATGAAATACCAGAGCATCCGCCCCGACGAGTACACTTACGCGCCGTTGCTCAAGTCATGCTCGAACATTTGCGATTACAGACTAGGCCAGTGCGTCCATGGACAGATTCTAAGAGTTGGGTTTGAATGGTTTAGTTCGATTAGGATTGGAGTTATTGAGCTTTATGTAACTTGTGGGAGAATGGGGGATGCTGAGAAGGTGTTTGATGCTTTGTCTCAGAGAGATATCATCGTTTGGAATTTGATGGTTCGTGGGTTTTGCAAGACAGGTGATGTCGATAAGGGATTGTGTTTGTTTAAGCAGATGGGTGAACGGAATGTTGTTTCTTGGAACTCGATGATTTCGTGCTTAGCGCATAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

219

Amino Acids

25.26

Weight (kDa)

9.5

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	70 - 118	4e-06	PPR repeat family
PPR_2	PF13041	172 - 216	1e-07	PPR repeat family
PPR	PF01535	175 - 204	2.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09190
fragaria_vesca	FvH4_1g08040
malus_domestica	MD02G1085000.v1.1
prunus_persica	Prupe.7G204600_v2.0.a1
pyrus_communis	pycom02g06780 pycom02g20400
rosa_chinensis	RchiOBHm_Chr1g0349371 RchiOBHm_Chr1g0365421 RchiOBHm_Chr2g0094071 RchiOBHm_Chr2g0100501 RchiOBHm_Chr2g0145241 RchiOBHm_Chr5g0027681
rosa_laevigata	RLG00000016453 RLG00000016978 RLG00000028565
rosa_multiflora	Rmu_sc0000528.1_g000021 Rmu_sc0001942.1_g000078 Rmu_sc0001989.1_g000005 Rmu_sc0001989.1_g000006 Rmu_sc0002834.1_g000001 Rmu_sc0010460.1_g000009 Rmu_sc0015757.1_g000001 Rmu_sc0023774.1_g000001 Rmu_ssc0000469.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065660 Rroxscaffold_2G00147500
rosa_rugosa	Rorug01G0191200 Rorug01G0245800 Rorug01G0404500 Rorug02G0040700 Rorug02G0042900 Rorug02G0088700 Rorug02G0306900 Rorug02G0425200 RorugPtG0000800
rosa_samantha	Rh1BG121500 Rh2BG141500 Rh2BG455200 Rh2CG090800 Rh2CG143700 Rh2DG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	28
AccII	CGCG	1 cut(s)	332
AciI	CCGC	6 cut(s)	23, 28, 40, 76, 100, 310
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	2 cut(s)	52, 112
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	22, 153
AgsI	TTSAA	2 cut(s)	193, 416
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	2 cut(s)	174, 451
AluI	AGCT	2 cut(s)	174, 451
Alw26I	GTCTC	2 cut(s)	148, 510
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	4 cut(s)	52, 106, 112, 376
ApoI	RAATTY	1 cut(s)	529
AspLEI	GCGC	2 cut(s)	334, 646
AsuHPI	GGTGA	2 cut(s)	572, 611
AsuII	TTCGAA	1 cut(s)	264
BalI	TGGCCA	2 cut(s)	54, 114
BccI	CCATC	3 cut(s)	78, 529, 589
BceAI	ACGGC	1 cut(s)	319
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BcoDI	GTCTC	2 cut(s)	148, 510
BfaI	CTAG	1 cut(s)	374
BisI	GCNGC	1 cut(s)	29
BlpI	GCTNAGC	1 cut(s)	640
BlsI	GCNGC	1 cut(s)	30
BmsI	GCATC	3 cut(s)	315, 469, 487
Bpu1102I	GCTNAGC	1 cut(s)	640
Bpu14I	TTCGAA	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	5 cut(s)	49, 103, 109, 231, 388
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 153
Bse1I	ACTGG	1 cut(s)	379
BseDI	CCNNGG	5 cut(s)	49, 103, 109, 231, 388
BseGI	GGATG	3 cut(s)	213, 306, 484
BseLI	CCNNNNNNNGG	2 cut(s)	22, 153
BseMII	CTCAG	2 cut(s)	474, 521
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	2 cut(s)	35, 86
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	4 cut(s)	54, 108, 114, 378
BslI	CCNNNNNNNGG	2 cut(s)	22, 153
BsmAI	GTCTC	2 cut(s)	148, 510
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	4 cut(s)	54, 108, 114, 378
Bsp119I	TTCGAA	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	81
Bsp1720I	GCTNAGC	1 cut(s)	640
Bsp19I	CCATGG	4 cut(s)	49, 103, 231, 388
BspACI	CCGC	6 cut(s)	23, 28, 40, 76, 100, 310
BspANI	GGCC	4 cut(s)	54, 108, 114, 378
BspCNI	CTCAG	2 cut(s)	475, 520
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	291
BspPI	GGATC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	5 cut(s)	49, 103, 109, 231, 388
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	5 cut(s)	49, 103, 109, 231, 388
Bst6I	CTCTTC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	4 cut(s)	401, 483, 507, 640
BstDSI	CCRYGG	4 cut(s)	49, 103, 231, 388
BstF5I	GGATG	3 cut(s)	213, 306, 484
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	334, 646
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	2 cut(s)	148, 510
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	15
BstUI	CGCG	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	81
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	54, 108, 114, 378
BtgI	CCRYGG	4 cut(s)	49, 103, 231, 388
BtsCI	GGATG	3 cut(s)	213, 306, 484
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	13
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	2 cut(s)	334, 646
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	7 cut(s)	12, 50, 104, 232, 292, 348, 389
CviJI	RGCY	6 cut(s)	54, 108, 114, 174, 378, 451
CviKI_1	RGCY	6 cut(s)	54, 108, 114, 174, 378, 451
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	4 cut(s)	401, 483, 507, 640
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	2 cut(s)	52, 112
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	5 cut(s)	29, 38, 65, 89, 299
Eco130I	CCWWGG	5 cut(s)	49, 103, 109, 231, 388
Eco32I	GATATC	1 cut(s)	517
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	5 cut(s)	49, 103, 109, 231, 388
ErhI	CCWWGG	5 cut(s)	49, 103, 109, 231, 388
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	7 cut(s)	15, 53, 107, 235, 295, 351, 392
FatI	CATG	7 cut(s)	11, 49, 103, 231, 291, 347, 388
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	3 cut(s)	200, 293, 491
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	2 cut(s)	333, 645
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	4 cut(s)	54, 108, 114, 378
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	2 cut(s)	334, 646
Hin1II	CATG	7 cut(s)	15, 53, 107, 235, 295, 351, 392
Hin6I	GCGC	2 cut(s)	332, 644
HinP1I	GCGC	2 cut(s)	332, 644
HinfI	GANTC	3 cut(s)	33, 243, 397
HphI	GGTGA	2 cut(s)	572, 611
Hpy166II	GTNNAC	2 cut(s)	324, 602
Hpy188I	TCNGA	1 cut(s)	510
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	2 cut(s)	324, 602
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	271, 481
HpyCH4V	TGCA	2 cut(s)	255, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	4 cut(s)	401, 483, 507, 640
Hsp92II	CATG	7 cut(s)	15, 53, 107, 235, 295, 351, 392
HspAI	GCGC	2 cut(s)	332, 644
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	92, 314, 392, 543
LweI	GCATC	3 cut(s)	315, 469, 487
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	2 cut(s)	156, 457
MalI	GATC	1 cut(s)	83
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	1 cut(s)	81
MboII	GAAGA	2 cut(s)	211, 274
MflI	RGATCY	1 cut(s)	81
MlsI	TGGCCA	2 cut(s)	54, 114
MluCI	AATT	2 cut(s)	226, 529
MluNI	TGGCCA	2 cut(s)	54, 114
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	8 cut(s)	13, 47, 53, 56, 104, 107, 140, 227
Mox20I	TGGCCA	2 cut(s)	54, 114
MscI	TGGCCA	2 cut(s)	54, 114
MseI	TTAA	2 cut(s)	225, 588
Msp20I	TGGCCA	2 cut(s)	54, 114
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	12
NcoI	CCATGG	4 cut(s)	49, 103, 231, 388
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	7 cut(s)	15, 53, 107, 235, 295, 351, 392
NmuCI	GTSAC	1 cut(s)	156
NspI	RCATGY	1 cut(s)	15
NspV	TTCGAA	1 cut(s)	264
PaeI	GCATGC	1 cut(s)	15
PagI	TCATGA	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 632
PfeI	GAWTC	2 cut(s)	243, 397
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	225, 588
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	42
SetI	ASST	5 cut(s)	96, 176, 453, 492, 562
SfaNI	GCATC	3 cut(s)	315, 469, 487
SfuI	TTCGAA	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	15
Sse9I	AATT	2 cut(s)	226, 529
SsiI	CCGC	6 cut(s)	23, 28, 40, 76, 100, 310
SspMI	CTAG	1 cut(s)	374
StyI	CCWWGG	5 cut(s)	49, 103, 109, 231, 388
TaqI	TCGA	5 cut(s)	264, 353, 428, 567, 626
TasI	AATT	2 cut(s)	226, 529
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	243, 397
Tru1I	TTAA	2 cut(s)	225, 588
Tru9I	TTAA	2 cut(s)	225, 588
TscAI	CASTG	1 cut(s)	386
TseFI	GTSAC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	2 cut(s)	136, 619
TspRI	CASTG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.