Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005829

Physical Location & Seq

Genomic Coordinates Forward (+)

50163513 .. 50167652

Gene Structure 4140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG241900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGACAATTCATTGAACTCTGATGAAAGTTATGATCTGGGATATCAACCTTCACCTTCTTCTATGGATCAATCAGTAGCAGAAACTTCAACAATGAGTAGTGATTCATTTCTGTACCGCCGGACTAATTCTGATGGCTCGGCTTTCTCTGGGTCAGTAGGTGACAGCAGCTATTCTGGTGAAGCTTCTCCTTCTTGCTGGCCAAATGTGAAATCCAACCTCAGTAACCAAACTGTCCTCAGCAGACTAGGAATGAAGAAACACATGAATCTCACAGACGATAAACTTGAAGATCTTGAAGCTGTGGATTTAGAACTTGAGTTGATGAAAGAAAGATTTGCAAAGCTCTTGTTGGGTGAAGACATGTCAGGGAGTGGGAAAGGTGTATGCACAGCTGTTACAATTTCAAATTCTATTACCAACCTCTATGCCACTATTTTTGGGGCAAATCTGAGGTTAGAGCCTTTGAATCCTGAGAAGAAGGCAATGTGGAGAAGGGAAATGGATTGTCTTTTATCCGTTTGTGATTACATAGTAGACCTCACTCCAGTATCCCAAACTTTACCAAATGGGACATCTGTGGAGATGATGACAAGCAGACCAAGATCTGATATTTATATCAACCTTCCAGCTTTAAAAAAGCTTGATGCAATGCTCATTGAAGTACTTGATAGTTTTCAAGAGACAGAGTTTTGGTATGCAGAACAAGGGAGCATTTCATCAAAGTCAACTACTTCTGCATCAGCATCCGGATCGTTTCGAAGGATTAGTGTGCAGCGGAATGAGGAGAAATGGTGGGTGCCGGTTCCATGTGTTCCTCCAGGTGGCCTCTCTGAGAAGTCAAGGAAGCATTTGAGACACAAACGCGACAGTTCTAATCAAATTCACAAAGCAGCCATGGCAATCAACAGCAGCATTCTTTCTGAGATGGAAATCCCAGAGTCATACATGGCAGGTCTTCCAAAGGTATTCAGTCTTCAATCAACCAACAAATTTTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009505 GO:0009531 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009664 GO:0009814 GO:0009817 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0017016 GO:0017048 GO:0019899 GO:0021700 GO:0022622 GO:0030154 GO:0030312 GO:0031267 GO:0032501 GO:0032502 GO:0040007 GO:0043207 GO:0044424 GO:0044464 GO:0045087 GO:0045229 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0060560 GO:0065007 GO:0065009 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0098542 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

334

Amino Acids

37.04

Weight (kDa)

5.22

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	105 - 323	2e-105	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01700 AT1G01700 AT1G01700 AT1G01700 AT1G01700 AT4G00460 AT4G00460 AT4G00460 AT4G00460
fragaria_vesca	FvH4_7g14260 FvH4_7g14260 FvH4_7g14260 FvH4_7g14260
malus_domestica	MD01G1060500.v1.1 MD07G1137200.v1.1
prunus_persica	Prupe.2G170400_v2.0.a1
pyrus_communis	pycom07g13500
rosa_chinensis	RchiOBHm_Chr1g0355251
rosa_laevigata	RLG00000028167
rosa_multiflora	Rmu_sc0003115.1_g000043
rosa_roxburghii	Rroxscaffold_4G00300560
rosa_rugosa	Rorug01G0245800 Rorug01G0245800
rosa_samantha	Rh1AG258200 Rh1BG227800 Rh1CG241900 Rh1DG255600
rosa_wichuraiana	Rw1G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	944
AccB1I	GGYRCC	1 cut(s)	799
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	1 cut(s)	867
AccIII	TCCGGA	1 cut(s)	749
AciI	CCGC	2 cut(s)	118, 778
AclWI	GGATC	2 cut(s)	75, 760
AcoI	YGGCCR	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	409, 882, 992
AfaI	GTAC	2 cut(s)	116, 666
AfiI	CCNNNNNNNGG	1 cut(s)	824
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	9 cut(s)	16, 90, 290, 299, 408, 469, 662, 680, 980
AjnI	CCWGG	1 cut(s)	820
AjuI	GAANNNNNNNTTGG	1 cut(s)	980
AluBI	AGCT	7 cut(s)	171, 185, 302, 346, 395, 632, 643
AluI	AGCT	7 cut(s)	171, 185, 302, 346, 395, 632, 643
Alw26I	GTCTC	2 cut(s)	677, 850
AlwI	GGATC	2 cut(s)	75, 760
Aor13HI	TCCGGA	1 cut(s)	749
AoxI	GGCC	2 cut(s)	200, 826
ApeKI	GCWGC	4 cut(s)	168, 775, 893, 912
ApoI	RAATTY	3 cut(s)	409, 882, 992
AsuHPI	GGTGA	4 cut(s)	45, 173, 191, 368
AsuII	TTCGAA	1 cut(s)	760
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BalI	TGGCCA	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	799
BarI	GAAGNNNNNNTAC	2 cut(s)	960, 992
BbsI	GAAGAC	3 cut(s)	366, 950, 968
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	4 cut(s)	180, 787, 905, 924
BccI	CCATC	2 cut(s)	128, 922
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BciT130I	CCWGG	1 cut(s)	822
BciVI	GTATCC	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	677, 850
BfaI	CTAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	944
BfuI	GTATCC	1 cut(s)	562
BglII	AGATCT	2 cut(s)	292, 605
BisI	GCNGC	4 cut(s)	169, 776, 894, 913
BlsI	GCNGC	4 cut(s)	170, 777, 895, 914
BmcAI	AGTACT	1 cut(s)	666
Bme1390I	CCNGG	1 cut(s)	822
BmiI	GGNNCC	2 cut(s)	801, 807
BmrFI	CCNGG	1 cut(s)	822
BmsI	GCATC	3 cut(s)	637, 749, 755
BpiI	GAAGAC	3 cut(s)	366, 950, 968
BpmI	CTGGAG	2 cut(s)	531, 804
Bpu10I	CCTNAGC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	760
BpuEI	CTTGAG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	932
BsaJI	CCNNGG	1 cut(s)	897
BsaWI	WCCGGW	1 cut(s)	749
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	2 cut(s)	492, 657
Bse8I	GATNNNNATC	1 cut(s)	932
BseAI	TCCGGA	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	822
BseDI	CCNNGG	1 cut(s)	897
BseGI	GGATG	1 cut(s)	746
BseJI	GATNNNNATC	1 cut(s)	932
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMI	GCAATG	2 cut(s)	492, 657
BseMII	CTCAG	6 cut(s)	235, 253, 443, 465, 825, 915
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	1 cut(s)	800
BseXI	GCAGC	4 cut(s)	180, 787, 905, 924
BsgI	GTGCAG	1 cut(s)	794
Bsh1236I	CGCG	1 cut(s)	867
BshFI	GGCC	2 cut(s)	202, 828
BshNI	GGYRCC	1 cut(s)	799
BsiSI	CCGG	3 cut(s)	121, 750, 803
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	2 cut(s)	677, 850
BsmFI	GGGAC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	2 cut(s)	202, 828
Bsp119I	TTCGAA	1 cut(s)	760
Bsp13I	TCCGGA	1 cut(s)	749
Bsp143I	GATC	5 cut(s)	34, 67, 292, 605, 752
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	2 cut(s)	118, 778
BspANI	GGCC	2 cut(s)	202, 828
BspCNI	CTCAG	6 cut(s)	234, 252, 444, 466, 826, 916
BspEI	TCCGGA	1 cut(s)	749
BspFNI	CGCG	1 cut(s)	867
BspLI	GGNNCC	2 cut(s)	801, 807
BspMI	ACCTGC	1 cut(s)	944
BspPI	GGATC	2 cut(s)	75, 760
BspT104I	TTCGAA	1 cut(s)	760
BspT107I	GGYRCC	1 cut(s)	799
BsrDI	GCAATG	2 cut(s)	492, 657
BsrFI	RCCGGY	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	548
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	1 cut(s)	897
BssMI	GATC	5 cut(s)	34, 67, 292, 605, 752
BssT1I	CCWWGG	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	822
Bst4CI	ACNGT	2 cut(s)	235, 872
BstBI	TTCGAA	1 cut(s)	760
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	6 cut(s)	221, 239, 452, 474, 834, 924
BstDSI	CCRYGG	1 cut(s)	897
BstF5I	GGATG	1 cut(s)	746
BstFNI	CGCG	1 cut(s)	867
BstKTI	GATC	5 cut(s)	37, 70, 295, 608, 755
BstMAI	GTCTC	2 cut(s)	677, 850
BstMBI	GATC	5 cut(s)	34, 67, 292, 605, 752
BstMWI	GCNNNNNNNGC	1 cut(s)	899
BstNI	CCWGG	1 cut(s)	822
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	820
BstUI	CGCG	1 cut(s)	867
BstV1I	GCAGC	4 cut(s)	180, 787, 905, 924
BstV2I	GAAGAC	3 cut(s)	366, 950, 968
BstX2I	RGATCY	2 cut(s)	292, 605
BstYI	RGATCY	2 cut(s)	292, 605
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	202, 828
BtgI	CCRYGG	1 cut(s)	897
BtsCI	GGATG	1 cut(s)	746
BveI	ACCTGC	1 cut(s)	944
Cac8I	GCNNGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	802
Csp6I	GTAC	2 cut(s)	115, 665
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	5 cut(s)	265, 364, 810, 898, 949
CviQI	GTAC	2 cut(s)	115, 665
DdeI	CTNAG	6 cut(s)	221, 239, 452, 474, 834, 924
DpnI	GATC	5 cut(s)	36, 69, 294, 607, 754
DpnII	GATC	5 cut(s)	34, 67, 292, 605, 752
DraI	TTTAAA	1 cut(s)	636
EaeI	YGGCCR	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	897
Eco32I	GATATC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	820
EcoRV	GATATC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	897
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	5 cut(s)	268, 367, 813, 901, 952
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	5 cut(s)	264, 363, 809, 897, 948
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	4 cut(s)	169, 776, 894, 913
FokI	GGATG	1 cut(s)	733
Fsp4HI	GCNGC	4 cut(s)	169, 776, 894, 913
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	4 cut(s)	169, 776, 894, 913
GsuI	CTGGAG	2 cut(s)	531, 804
HaeIII	GGCC	2 cut(s)	202, 828
HapII	CCGG	3 cut(s)	121, 750, 803
Hin1II	CATG	5 cut(s)	268, 367, 813, 901, 952
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HindIII	AAGCTT	2 cut(s)	183, 641
HinfI	GANTC	4 cut(s)	104, 268, 469, 941
HpaII	CCGG	3 cut(s)	121, 750, 803
HphI	GGTGA	4 cut(s)	45, 173, 191, 368
Hpy166II	GTNNAC	2 cut(s)	538, 729
Hpy188I	TCNGA	6 cut(s)	22, 133, 453, 610, 835, 925
Hpy188III	TCNNGA	4 cut(s)	296, 473, 680, 750
Hpy8I	GTNNAC	2 cut(s)	538, 729
HpyAV	CCTTC	7 cut(s)	60, 66, 201, 475, 489, 635, 756
HpyCH4III	ACNGT	2 cut(s)	235, 872
HpyCH4V	TGCA	6 cut(s)	341, 390, 650, 701, 740, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	899
HpyF3I	CTNAG	6 cut(s)	221, 239, 452, 474, 834, 924
Hsp92II	CATG	5 cut(s)	268, 367, 813, 901, 952
Kpn2I	TCCGGA	1 cut(s)	749
Kzo9I	GATC	5 cut(s)	34, 67, 292, 605, 752
LmnI	GCTCC	1 cut(s)	711
Lsp1109I	GCAGC	4 cut(s)	180, 787, 905, 924
LweI	GCATC	3 cut(s)	637, 749, 755
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	161, 224, 397
MalI	GATC	5 cut(s)	36, 69, 294, 607, 754
MboI	GATC	5 cut(s)	34, 67, 292, 605, 752
MboII	GAAGA	8 cut(s)	51, 268, 302, 371, 490, 950, 968, 991
MflI	RGATCY	2 cut(s)	292, 605
MlsI	TGGCCA	1 cut(s)	202
MluCI	AATT	6 cut(s)	7, 127, 402, 409, 882, 992
MluNI	TGGCCA	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	950
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	8 cut(s)	230, 248, 434, 447, 551, 778, 828, 839
Mox20I	TGGCCA	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	202
MseI	TTAA	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	202
MspA1I	CMGCKG	2 cut(s)	395, 778
MspI	CCGG	3 cut(s)	121, 750, 803
MspR9I	CCNGG	1 cut(s)	822
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	1 cut(s)	822
MvnI	CGCG	1 cut(s)	867
MwoI	GCNNNNNNNGC	1 cut(s)	899
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	5 cut(s)	34, 67, 292, 605, 752
NlaIII	CATG	5 cut(s)	268, 367, 813, 901, 952
NlaIV	GGNNCC	2 cut(s)	801, 807
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	760
PciI	ACATGT	1 cut(s)	363
PctI	GAATGC	1 cut(s)	915
PfeI	GAWTC	3 cut(s)	104, 268, 469
PkrI	GCNGC	4 cut(s)	170, 777, 895, 914
PleI	GAGTC	1 cut(s)	949
PpsI	GAGTC	1 cut(s)	949
PscI	ACATGT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	820
PspGI	CCWGG	1 cut(s)	820
PspN4I	GGNNCC	2 cut(s)	801, 807
PsuI	RGATCY	2 cut(s)	292, 605
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	2 cut(s)	116, 666
RsaNI	GTAC	2 cut(s)	115, 665
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	4 cut(s)	169, 776, 894, 913
Sau3AI	GATC	5 cut(s)	34, 67, 292, 605, 752
ScaI	AGTACT	1 cut(s)	666
SchI	GAGTC	1 cut(s)	950
ScrFI	CCNGG	1 cut(s)	822
SfaNI	GCATC	3 cut(s)	637, 749, 755
SfuI	TTCGAA	1 cut(s)	760
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	6 cut(s)	7, 127, 402, 409, 882, 992
SsiI	CCGC	2 cut(s)	118, 778
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	820
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	2 cut(s)	235, 872
TaqI	TCGA	1 cut(s)	760
TasI	AATT	6 cut(s)	7, 127, 402, 409, 882, 992
TatI	WGTACW	1 cut(s)	664
TfiI	GAWTC	3 cut(s)	104, 268, 469
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	4 cut(s)	168, 775, 893, 912
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	6 cut(s)	39, 96, 269, 281, 341, 708
TspGWI	ACGGA	1 cut(s)	508
XapI	RAATTY	3 cut(s)	409, 882, 992
XceI	RCATGY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.