RchiOBHm_Chr1g0355251

Rop guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
47919556 .. 47922654
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58073

Sequence Viewer

Length: 1434 bp
ATGGACAATTCATTGAACTCTGATGAAAGTTATGATCTGGGATATCAACCTTCACCTTCTTCTATGGATCAATCAGTAGCAGAAACTTCAACAATGAGTAGTGATTCATTTTTGTACCGCCGGACTAATTCTGATGTCTCGGCTTTCTCTGGGTCAGTAGGTGACAGCAGCTATTCTGGTGAAGCTTCTCCTTCTTGCTGGCCAAATGTGAAATCCAACCTCAGTAACCAAACTGTCCTCAGCAGACTAGGAATGAAGAAACACATGAATCTCACAGACGATAAACTTGAAGATCTTGAAGCTGTGGATTTAGAACTAGAGTTGATGAAAGAAAGATTTGCAAAGCTCTTGTTGGGTGAAGACATGTCAGGGAGTGGGAAAGGTGTATGCACAGCTGTTACAATTTCAAATTCTATTACCAACCTCTATGCCACTATTTTTGGGGCAAATCTGAGGTTAGAGCCTTTGAATCCTGAGAAGAAGGCAATGTGGAGAAGGGAAATGGATTGTCTTTTATCCGTTTGTGATTACATAGTAGACCTCACTCCAGTATCCCAAACTTTACCAAATGGGACATCTGTGGAGATGATGACAAGCAGACCAAGATCTGATATTTATATCAACCTTCCAGCTTTAAAAAAGCTTGATGCAATGCTCATTGAAGTGCTTGATAGTTTTCAACAGACAGAGTTTTGGTATGCAGAACAAGGGAGCATTTCATCAAAGTCAACTACATCTGCATCAGCATCAGGATCGTTTCGAAGGATTAGTGTGCAGCGGAATGAGGAGAAATGGTGGGTGCCGGTTCCATGTGTTCCTCCAGGTGGCCTCTCTGAGAAGTCAAGGAAGCATTTGAGACACAAGCGCGACAGTTCTAATCAAATTCACAAAGCAGCTATGGCAATCAACAGCAGCATTCTTTCTGAGATGGAAATCCCAGAGTCATACATGGCAGGTCTTCCAAAGAGTGGAAAAGCTTGCTTGGGAGATTCGATTTACCGCTACACGTGTACCTCAGAGAAGTTCTCCCCAGAGTATCTTCTAGACTGTCTCAACATAGCTTCTGAACATGAAGCACTTGAACTTGCAGATAGAGTTGAATCTTCAATGTACACATGGAGACGTAAAGCATGCATGAGTAATTCAAAGTCTTCATGGGTGATGGTAAAGGATCTAATGTCAGAGACAGACAAGAATGACAAAAACCATGTCCTAGCAGAAAGAGCAGAGAGCTTGTTGTTCTCTTTGAAGCAGAGATATCCTGAGCTCTCTCAGACATCCTTGGACACATGCAAGATTCAATACAACAAGGATGTGGGGCAAGCAGTACTAGAGAGCTACTCAAGAGTGTTGGAAAGTTTTGCATACAACATTGTTGCTTGGATTGAAGATGTAATTCATGTGGACAGATCGATGAGAAACCACGACCAATAG

Protein Analysis

477

Amino Acids

53.52

Weight (kDa)

5.27

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 105 - 473 1.8e-175 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 944
AccB1I GGYRCC 1 cut(s) 799
AccB7I CCANNNNNTGG 1 cut(s) 968
AccI GTMKAC 1 cut(s) 537
AccII CGCG 1 cut(s) 867
AciI CCGC 3 cut(s) 118, 778, 1000
AclWI GGATC 3 cut(s) 75, 760, 1179
AcoI YGGCCR 1 cut(s) 200
AcsI RAATTY 2 cut(s) 409, 882
AcvI CACGTG 1 cut(s) 1008
AfaI GTAC 4 cut(s) 116, 1012, 1112, 1329
AfiI CCNNNNNNNGG 2 cut(s) 824, 968
AflIII ACRYGT 3 cut(s) 363, 1005, 1007
AjnI CCWGG 1 cut(s) 820
Alw21I GWGCWC 1 cut(s) 1269
Alw26I GTCTC 5 cut(s) 142, 850, 1055, 1114, 1178
AlwI GGATC 3 cut(s) 75, 760, 1179
AoxI GGCC 2 cut(s) 200, 826
ApeKI GCWGC 4 cut(s) 168, 775, 893, 912
ApoI RAATTY 2 cut(s) 409, 882
ArsI GACNNNNNNTTYG 2 cut(s) 1194, 1226
AspLEI GCGC 1 cut(s) 867
AsuHPI GGTGA 5 cut(s) 45, 173, 191, 368, 1171
AsuII TTCGAA 1 cut(s) 760
BaeI ACNNNNGTAYC 4 cut(s) 534, 567, 994, 1027
BalI TGGCCA 1 cut(s) 202
BanI GGYRCC 1 cut(s) 799
BanII GRGCYC 1 cut(s) 1269
BbrPI CACGTG 1 cut(s) 1008
BbsI GAAGAC 3 cut(s) 366, 950, 1143
Bbv12I GWGCWC 1 cut(s) 1269
BbvCI CCTCAGC 1 cut(s) 239
BbvI GCAGC 4 cut(s) 180, 787, 905, 924
BccI CCATC 2 cut(s) 922, 1156
BcgI CGANNNNNNTGC 2 cut(s) 735, 769
BciT130I CCWGG 1 cut(s) 822
BciVI GTATCC 1 cut(s) 562
BcoDI GTCTC 5 cut(s) 142, 850, 1055, 1114, 1178
BfaI CTAG 5 cut(s) 248, 317, 1043, 1214, 1331
BfuAI ACCTGC 1 cut(s) 944
BfuI GTATCC 1 cut(s) 562
BglII AGATCT 2 cut(s) 292, 605
BisI GCNGC 4 cut(s) 169, 776, 894, 913
BlsI GCNGC 4 cut(s) 170, 777, 895, 914
BmcAI AGTACT 1 cut(s) 1329
Bme1390I CCNGG 1 cut(s) 822
BmiI GGNNCC 2 cut(s) 801, 807
BmrFI CCNGG 1 cut(s) 822
BmsI GCATC 3 cut(s) 637, 749, 755
BpiI GAAGAC 3 cut(s) 366, 950, 1143
BplI GAGNNNNNCTC 4 cut(s) 1010, 1042, 1325, 1357
BpmI CTGGAG 2 cut(s) 531, 804
Bpu10I CCTNAGC 2 cut(s) 239, 1263
Bpu14I TTCGAA 1 cut(s) 760
BpuEI CTTGAG 1 cut(s) 1327
Bsa29I ATCGAT 1 cut(s) 1412
BsaAI YACGTR 1 cut(s) 1008
BsaBI GATNNNNATC 1 cut(s) 932
BsaJI CCNNGG 1 cut(s) 1281
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bsc4I CCNNNNNNNGG 2 cut(s) 824, 968
Bse118I RCCGGY 1 cut(s) 802
Bse1I ACTGG 1 cut(s) 548
Bse3DI GCAATG 2 cut(s) 492, 657
Bse8I GATNNNNATC 1 cut(s) 932
BseBI CCWGG 1 cut(s) 822
BseCI ATCGAT 1 cut(s) 1412
BseDI CCNNGG 1 cut(s) 1281
BseGI GGATG 2 cut(s) 1277, 1318
BseJI GATNNNNATC 1 cut(s) 932
BseLI CCNNNNNNNGG 2 cut(s) 824, 968
BseMI GCAATG 2 cut(s) 492, 657
BseMII CTCAG 9 cut(s) 235, 253, 443, 465, 825, 915, 1029, 1254, 1286
BseNI ACTGG 1 cut(s) 548
BseRI GAGGAG 1 cut(s) 800
BseXI GCAGC 4 cut(s) 180, 787, 905, 924
BsgI GTGCAG 1 cut(s) 794
Bsh1236I CGCG 1 cut(s) 867
BshFI GGCC 2 cut(s) 202, 828
BshNI GGYRCC 1 cut(s) 799
BshVI ATCGAT 1 cut(s) 1412
BsiHKAI GWGCWC 1 cut(s) 1269
BsiSI CCGG 2 cut(s) 121, 803
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 2 cut(s) 824, 968
BsmAI GTCTC 5 cut(s) 142, 850, 1055, 1114, 1178
BsmBI CGTCTC 1 cut(s) 1114
BsmFI GGGAC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 2 cut(s) 202, 828
Bsp119I TTCGAA 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 1269
Bsp1407I TGTACA 1 cut(s) 1110
Bsp143I GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
BspACI CCGC 3 cut(s) 118, 778, 1000
BspANI GGCC 2 cut(s) 202, 828
BspCNI CTCAG 9 cut(s) 234, 252, 444, 466, 826, 916, 1028, 1255, 1285
BspDI ATCGAT 1 cut(s) 1412
BspFNI CGCG 1 cut(s) 867
BspLI GGNNCC 2 cut(s) 801, 807
BspMI ACCTGC 1 cut(s) 944
BspPI GGATC 3 cut(s) 75, 760, 1179
BspT104I TTCGAA 1 cut(s) 760
BspT107I GGYRCC 1 cut(s) 799
BsrDI GCAATG 2 cut(s) 492, 657
BsrFI RCCGGY 1 cut(s) 802
BsrGI TGTACA 1 cut(s) 1110
BsrI ACTGG 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 802
BssECI CCNNGG 1 cut(s) 1281
BssMI GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
BssT1I CCWWGG 1 cut(s) 1281
Bst2UI CCWGG 1 cut(s) 822
Bst4CI ACNGT 3 cut(s) 235, 872, 1049
BstAUI TGTACA 1 cut(s) 1110
BstBAI YACGTR 1 cut(s) 1008
BstBI TTCGAA 1 cut(s) 760
BstC8I GCNNGC 4 cut(s) 200, 979, 1132, 1323
BstDEI CTNAG 9 cut(s) 221, 239, 452, 474, 834, 924, 1015, 1263, 1272
BstF5I GGATG 2 cut(s) 1277, 1318
BstFNI CGCG 1 cut(s) 867
BstHHI GCGC 1 cut(s) 867
BstKTI GATC 7 cut(s) 37, 70, 295, 608, 755, 1174, 1412
BstMAI GTCTC 5 cut(s) 142, 850, 1055, 1114, 1178
BstMBI GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
BstMWI GCNNNNNNNGC 2 cut(s) 899, 1223
BstNI CCWGG 1 cut(s) 822
BstNSI RCATGY 3 cut(s) 367, 1134, 1293
BstSCI CCNGG 1 cut(s) 820
BstUI CGCG 1 cut(s) 867
BstV1I GCAGC 4 cut(s) 180, 787, 905, 924
BstV2I GAAGAC 3 cut(s) 366, 950, 1143
BstX2I RGATCY 3 cut(s) 292, 605, 1171
BstYI RGATCY 3 cut(s) 292, 605, 1171
Bsu15I ATCGAT 1 cut(s) 1412
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 2 cut(s) 202, 828
BsuTUI ATCGAT 1 cut(s) 1412
BtsCI GGATG 2 cut(s) 1277, 1318
BveI ACCTGC 1 cut(s) 944
Cac8I GCNNGC 4 cut(s) 200, 979, 1132, 1323
CfoI GCGC 1 cut(s) 867
Cfr10I RCCGGY 1 cut(s) 802
ClaI ATCGAT 1 cut(s) 1412
Csp6I GTAC 4 cut(s) 115, 1011, 1111, 1328
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviQI GTAC 4 cut(s) 115, 1011, 1111, 1328
DdeI CTNAG 9 cut(s) 221, 239, 452, 474, 834, 924, 1015, 1263, 1272
DpnI GATC 7 cut(s) 36, 69, 294, 607, 754, 1173, 1411
DpnII GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
DraI TTTAAA 1 cut(s) 636
EaeI YGGCCR 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 1267
Eco130I CCWWGG 1 cut(s) 1281
Eco24I GRGCYC 1 cut(s) 1269
Eco32I GATATC 2 cut(s) 44, 1259
Eco53kI GAGCTC 1 cut(s) 1267
Eco72I CACGTG 1 cut(s) 1008
EcoICRI GAGCTC 1 cut(s) 1267
EcoRII CCWGG 1 cut(s) 820
EcoRV GATATC 2 cut(s) 44, 1259
EcoT14I CCWWGG 1 cut(s) 1281
EcoT22I ATGCAT 1 cut(s) 1136
EcoT38I GRGCYC 1 cut(s) 1269
ErhI CCWWGG 1 cut(s) 1281
Esp3I CGTCTC 1 cut(s) 1114
FaqI GGGAC 1 cut(s) 586
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 4 cut(s) 169, 776, 894, 913
FokI GGATG 2 cut(s) 1264, 1325
FriOI GRGCYC 1 cut(s) 1269
Fsp4HI GCNGC 4 cut(s) 169, 776, 894, 913
FspBI CTAG 5 cut(s) 248, 317, 1043, 1214, 1331
GlaI GCGC 1 cut(s) 866
GluI GCNGC 4 cut(s) 169, 776, 894, 913
GsuI CTGGAG 2 cut(s) 531, 804
HaeIII GGCC 2 cut(s) 202, 828
HapII CCGG 2 cut(s) 121, 803
HhaI GCGC 1 cut(s) 867
Hin6I GCGC 1 cut(s) 865
HinP1I GCGC 1 cut(s) 865
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 3 cut(s) 183, 641, 975
HinfI GANTC 7 cut(s) 104, 268, 469, 941, 989, 1100, 1297
HpaII CCGG 2 cut(s) 121, 803
HphI GGTGA 5 cut(s) 45, 173, 191, 368, 1171
Hpy166II GTNNAC 5 cut(s) 538, 729, 1011, 1113, 1405
Hpy188III TCNNGA 6 cut(s) 296, 473, 750, 1043, 1262, 1344
Hpy8I GTNNAC 5 cut(s) 538, 729, 1011, 1113, 1405
HpyAV CCTTC 7 cut(s) 60, 66, 201, 475, 489, 635, 756
HpyCH4III ACNGT 3 cut(s) 235, 872, 1049
HpyCH4IV ACGT 2 cut(s) 1007, 1123
HpyF10VI GCNNNNNNNGC 2 cut(s) 899, 1223
HpyF3I CTNAG 9 cut(s) 221, 239, 452, 474, 834, 924, 1015, 1263, 1272
HpySE526I ACGT 2 cut(s) 1007, 1123
HspAI GCGC 1 cut(s) 865
Kzo9I GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
LmnI GCTCC 1 cut(s) 711
Lsp1109I GCAGC 4 cut(s) 180, 787, 905, 924
LweI GCATC 3 cut(s) 637, 749, 755
MaeI CTAG 5 cut(s) 248, 317, 1043, 1214, 1331
MaeII ACGT 2 cut(s) 1007, 1123
MaeIII GTNAC 3 cut(s) 161, 224, 397
MalI GATC 7 cut(s) 36, 69, 294, 607, 754, 1173, 1411
MboI GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
MflI RGATCY 3 cut(s) 292, 605, 1171
MhlI GDGCHC 1 cut(s) 1269
MlsI TGGCCA 1 cut(s) 202
MluCI AATT 7 cut(s) 7, 127, 402, 409, 882, 1141, 1395
MluNI TGGCCA 1 cut(s) 202
MlyI GAGTC 1 cut(s) 950
MmeI TCCRAC 2 cut(s) 240, 1332
MnlI CCTC 9 cut(s) 230, 248, 434, 447, 551, 778, 828, 839, 1024
Mox20I TGGCCA 1 cut(s) 202
Mph1103I ATGCAT 1 cut(s) 1136
MscI TGGCCA 1 cut(s) 202
MseI TTAA 1 cut(s) 635
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 1 cut(s) 202
MspA1I CMGCKG 2 cut(s) 395, 778
MspI CCGG 2 cut(s) 121, 803
MspR9I CCNGG 1 cut(s) 822
Mva1269I GAATGC 1 cut(s) 915
MvaI CCWGG 1 cut(s) 822
MvnI CGCG 1 cut(s) 867
MwoI GCNNNNNNNGC 2 cut(s) 899, 1223
NdeII GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
NlaIV GGNNCC 2 cut(s) 801, 807
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 1136
NspI RCATGY 3 cut(s) 367, 1134, 1293
NspV TTCGAA 1 cut(s) 760
PaeI GCATGC 1 cut(s) 1134
PciI ACATGT 1 cut(s) 363
PctI GAATGC 1 cut(s) 915
PfeI GAWTC 6 cut(s) 104, 268, 469, 989, 1100, 1297
PflMI CCANNNNNTGG 1 cut(s) 968
PkrI GCNGC 4 cut(s) 170, 777, 895, 914
PleI GAGTC 1 cut(s) 949
PmaCI CACGTG 1 cut(s) 1008
PmlI CACGTG 1 cut(s) 1008
PpsI GAGTC 1 cut(s) 949
Ppu21I YACGTR 1 cut(s) 1008
PscI ACATGT 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 1269
Psp6I CCWGG 1 cut(s) 820
PspCI CACGTG 1 cut(s) 1008
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 2 cut(s) 801, 807
PsuI RGATCY 3 cut(s) 292, 605, 1171
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 4 cut(s) 116, 1012, 1112, 1329
RsaNI GTAC 4 cut(s) 115, 1011, 1111, 1328
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 1269
SaqAI TTAA 1 cut(s) 635
SatI GCNGC 4 cut(s) 169, 776, 894, 913
Sau3AI GATC 7 cut(s) 34, 67, 292, 605, 752, 1171, 1409
ScaI AGTACT 1 cut(s) 1329
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 1 cut(s) 822
SduI GDGCHC 1 cut(s) 1269
SfaNI GCATC 3 cut(s) 637, 749, 755
SfuI TTCGAA 1 cut(s) 760
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 1342
SmoI CTYRAG 1 cut(s) 1342
SphI GCATGC 1 cut(s) 1134
Sse9I AATT 7 cut(s) 7, 127, 402, 409, 882, 1141, 1395
SsiI CCGC 3 cut(s) 118, 778, 1000
SspMI CTAG 5 cut(s) 248, 317, 1043, 1214, 1331
SstI GAGCTC 1 cut(s) 1269
StyD4I CCNGG 1 cut(s) 820
StyI CCWWGG 1 cut(s) 1281
TaaI ACNGT 3 cut(s) 235, 872, 1049
TaiI ACGT 2 cut(s) 1010, 1126
TaqI TCGA 3 cut(s) 760, 992, 1412
TasI AATT 7 cut(s) 7, 127, 402, 409, 882, 1141, 1395
TatI WGTACW 2 cut(s) 1110, 1327
TfiI GAWTC 6 cut(s) 104, 268, 469, 989, 1100, 1297
Tru1I TTAA 1 cut(s) 635
Tru9I TTAA 1 cut(s) 635
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 4 cut(s) 168, 775, 893, 912
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 9 cut(s) 39, 96, 269, 281, 341, 708, 1086, 1143, 1388
TspGWI ACGGA 1 cut(s) 508
Van91I CCANNNNNTGG 1 cut(s) 968
XapI RAATTY 2 cut(s) 409, 882
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 3 cut(s) 367, 1134, 1293
XmiI GTMKAC 1 cut(s) 537
XspI CTAG 5 cut(s) 248, 317, 1043, 1214, 1331
ZrmI AGTACT 1 cut(s) 1329
Zsp2I ATGCAT 1 cut(s) 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.