Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010163

Physical Location & Seq

Genomic Coordinates Forward (+)

282761 .. 284245

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCTTTCACAGGAACTCTCGACAAATGCAATGTTTGTGATAAGACAGTCTATGTGGTGGACATGTTGTCCATTGAAGGAATGCCTTACCACAAGTCTTGCTTCAGGTGTACCCATTGCAAAGGAACCCTTCAGATGAGCAACTATTCCTCCATGGACGGAGTTTTGTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGCAATTTCAGCAAAAACTTTCAACCAGGAAAAACTGAGAAGCCAGAGCTGACTAGGACTCCCAGCAAGATATCTTCCATCTTCTGTGGAACACAAGACAAGTGTGCCGCTTGCGAAAAAACTGTTTACCCTCTTGAAAAGATACAAATGGAAGGAGAATGCTTCCACAAGACATGTTTCCGGTGCGCTCACGGTGGGTGTACGCTGACTCACTCCTCCTACGCCTCCTTAGATAGCGTTCTCTATTGCCGACATCACTTTAACCAACTCTTCATGGAGAAAGGAAACTACGCTCACGTCCTCCAAGCCGCCAATCACCGTCGCACAGCCTCAGGCAACACTCTTCCACCGGAACCTACCGAAGACGTCGCCGTGGAGGCCAAGGAAGAGAATGGCGTTTCAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

205

Amino Acids

22.99

Weight (kDa)

6.78

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	5.8e-12	LIM domain
LIM	PF00412	104 - 160	4.5e-10	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01780 AT2G45800 AT2G45800
fragaria_vesca	FvH4_7g13840 FvH4_7g13840
malus_domestica	MD01G1054500.v1.1 MD07G1140900.v1.1
prunus_persica	Prupe.2G164200_v2.0.a1 Prupe.2G164200_v2.0.a1
pyrus_communis	pycom01g07970
rosa_chinensis	RchiOBHm_Chr1g0354051
rosa_laevigata	RLG00000028231
rosa_multiflora	Rmu_sc0004632.1_g000005 Rmu_sc0006777.1_g000007
rosa_roxburghii	Rroxscaffold_4G00301270
rosa_rugosa	Rorug01G0240600
rosa_samantha	Rh1AG251700 Rh1BG223500 Rh1CG236100 Rh1DG250400
rosa_wichuraiana	Rw1G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	576
AciI	CCGC	2 cut(s)	315, 516
AcuI	CTGAAG	2 cut(s)	88, 116
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	3 cut(s)	112, 170, 409
AflIII	ACRYGT	2 cut(s)	63, 380
AgsI	TTSAA	4 cut(s)	77, 199, 230, 344
AhdI	GACNNNNNGTC	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	505
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AoxI	GGCC	1 cut(s)	585
AspLEI	GCGC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	515
AxyI	CCTNAGG	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	576
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	234
BfaI	CTAG	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	584
BisI	GCNGC	2 cut(s)	315, 516
BlsI	GCNGC	2 cut(s)	316, 517
Bme1390I	CCNGG	1 cut(s)	234
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	127, 561
BmrFI	CCNGG	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	573
BsaJI	CCNNGG	3 cut(s)	153, 579, 588
BsaWI	WCCGGW	2 cut(s)	387, 556
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 250, 280
Bse21I	CCTNAGG	1 cut(s)	538
Bse3DI	GCAATG	2 cut(s)	37, 115
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	153, 579, 588
BseMI	GCAATG	2 cut(s)	37, 115
BseMII	CTCAG	2 cut(s)	234, 552
BseRI	GAGGAG	1 cut(s)	412
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	587
BsiSI	CCGG	2 cut(s)	388, 557
BsmI	GAATGC	2 cut(s)	87, 371
BsnI	GGCC	1 cut(s)	587
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	315, 516
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	2 cut(s)	235, 551
BspLI	GGNNCC	2 cut(s)	127, 561
BsrDI	GCAATG	2 cut(s)	37, 115
BssECI	CCNNGG	3 cut(s)	153, 579, 588
BssNI	GRCGYC	1 cut(s)	573
BssT1I	CCWWGG	2 cut(s)	153, 588
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	4 cut(s)	49, 331, 401, 527
Bst6I	CTCTTC	4 cut(s)	200, 482, 555, 588
BstACI	GRCGYC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	3 cut(s)	243, 436, 538
BstDSI	CCRYGG	2 cut(s)	153, 579
BstHHI	GCGC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 584
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	2 cut(s)	67, 384
BstSCI	CCNGG	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	576
Bsu36I	CCTNAGG	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	587
BtgI	CCRYGG	2 cut(s)	153, 579
BtrI	CACGTC	1 cut(s)	505
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	111, 169, 408
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	4 cut(s)	64, 154, 381, 481
CviJI	RGCY	5 cut(s)	250, 256, 515, 536, 587
CviKI_1	RGCY	5 cut(s)	250, 256, 515, 536, 587
CviQI	GTAC	3 cut(s)	111, 169, 408
DdeI	CTNAG	3 cut(s)	243, 436, 538
DriI	GACNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	4 cut(s)	200, 482, 555, 588
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	4 cut(s)	200, 482, 555, 588
Eco130I	CCWWGG	2 cut(s)	153, 588
Eco32I	GATATC	1 cut(s)	279
Eco57I	CTGAAG	2 cut(s)	88, 116
Eco81I	CCTNAGG	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	153, 588
ErhI	CCWWGG	2 cut(s)	153, 588
FaeI	CATG	4 cut(s)	67, 157, 384, 484
FaiI	YATR	5 cut(s)	54, 65, 155, 382, 482
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 114, 146
FatI	CATG	4 cut(s)	63, 153, 380, 480
Fnu4HI	GCNGC	2 cut(s)	315, 516
Fsp4HI	GCNGC	2 cut(s)	315, 516
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	2 cut(s)	315, 516
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	2 cut(s)	388, 557
HhaI	GCGC	1 cut(s)	395
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	4 cut(s)	67, 157, 384, 484
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HinfI	GANTC	5 cut(s)	178, 203, 265, 415, 611
HpaII	CCGG	2 cut(s)	388, 557
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	4 cut(s)	61, 111, 334, 408
Hpy188I	TCNGA	2 cut(s)	135, 610
Hpy188III	TCNNGA	3 cut(s)	20, 341, 615
Hpy8I	GTNNAC	4 cut(s)	61, 111, 334, 408
Hpy99I	CGWCG	2 cut(s)	531, 578
HpyAV	CCTTC	3 cut(s)	71, 140, 353
HpyCH4III	ACNGT	4 cut(s)	49, 331, 401, 527
HpyCH4IV	ACGT	2 cut(s)	504, 573
HpyCH4V	TGCA	3 cut(s)	30, 120, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 584
HpyF3I	CTNAG	3 cut(s)	243, 436, 538
HpySE526I	ACGT	2 cut(s)	504, 573
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	4 cut(s)	67, 157, 384, 484
HspAI	GCGC	1 cut(s)	393
LpnPI	CCDG	9 cut(s)	91, 192, 219, 246, 264, 283, 401, 525, 570
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	504, 573
MboII	GAAGA	7 cut(s)	187, 273, 280, 469, 542, 581, 605
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	3 cut(s)	172, 259, 409
MnlI	CCTC	7 cut(s)	160, 348, 433, 442, 518, 547, 577
MseI	TTAA	1 cut(s)	468
MspI	CCGG	2 cut(s)	388, 557
MspR9I	CCNGG	1 cut(s)	234
Mva1269I	GAATGC	2 cut(s)	87, 371
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	216, 584
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	4 cut(s)	67, 157, 384, 484
NlaIV	GGNNCC	2 cut(s)	127, 561
NspI	RCATGY	2 cut(s)	67, 384
PciI	ACATGT	2 cut(s)	63, 380
PctI	GAATGC	2 cut(s)	87, 371
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	316, 517
PleI	GAGTC	3 cut(s)	172, 259, 409
PpsI	GAGTC	3 cut(s)	172, 259, 409
PscI	ACATGT	2 cut(s)	63, 380
Psp6I	CCWGG	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	127, 561
RsaI	GTAC	3 cut(s)	112, 170, 409
RsaNI	GTAC	3 cut(s)	111, 169, 408
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	2 cut(s)	315, 516
SchI	GAGTC	3 cut(s)	172, 259, 409
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	5 cut(s)	110, 258, 507, 565, 576
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	315, 516
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	2 cut(s)	153, 588
TaaI	ACNGT	4 cut(s)	49, 331, 401, 527
TaiI	ACGT	2 cut(s)	507, 576
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	211
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	317, 518
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TspDTI	ATGAA	1 cut(s)	469
TspGWI	ACGGA	1 cut(s)	174
XceI	RCATGY	2 cut(s)	67, 384
XspI	CTAG	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.