Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010163

Physical Location & Seq

Genomic Coordinates Forward (+)

21403505 .. 21405469

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G164200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCATTTACAGGAACTCTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGATATGTTGTCCCTTGAAGGACTACCTTATCATAAATCCTGCTTCAAATGCAGCCACTGCAAAGGATTTCTCTCGATGAGCACCTATTCCTCCATGGATGGAGTCCTCTACTGCAAACCTCATTTTGAGCAGCTTTTCAAAGAATCTGGGAATTTCAGCAAGAATTTCCAACCAAAGTCTGCTGAGAAGCAAAATGAACAACTGAATAGGGCCCCCAGCAAACTCTCCTCCATGTTCTCTGGAACCCTAGACAAGTGTGCAACTTGCTCAAAGACAGTCTATCCACTGGAGAAGGTGACATTGGAGGGGGAAAGTTACCACAAGTCATGCTTCAGGTGTGCTCATGGGGGCTGCCCACTTACACATTCATCCTATGCTGCTCTTGATGGAGTTCTTTACTGCAAGCACCATTTTTCTCAGCTCTTCCTGGAGAAAGGAAATTACAGCCATGTCCTCCAGGCTGCTGCAAACAGGAAAAATGCACTAGCTACTGAGCCAGCTGCTGCAGAAGCCCCTCCTGAGCCACAACCAGAACCAACAACAGAAGCAGAATCTAAGGACCAGACCGACCAACCACCACCAGAGGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

218

Amino Acids

23.96

Weight (kDa)

6.5

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01780 AT2G45800 AT2G45800
fragaria_vesca	FvH4_7g13840 FvH4_7g13840
malus_domestica	MD01G1054500.v1.1 MD07G1140900.v1.1
prunus_persica	Prupe.2G164200_v2.0.a1 Prupe.2G164200_v2.0.a1
pyrus_communis	pycom01g07970
rosa_chinensis	RchiOBHm_Chr1g0354051
rosa_laevigata	RLG00000028231
rosa_multiflora	Rmu_sc0004632.1_g000005 Rmu_sc0006777.1_g000007
rosa_roxburghii	Rroxscaffold_4G00301270
rosa_rugosa	Rorug01G0240600
rosa_samantha	Rh1AG251700 Rh1BG223500 Rh1CG236100 Rh1DG250400
rosa_wichuraiana	Rw1G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	211, 223
AcuI	CTGAAG	1 cut(s)	376
AgsI	TTSAA	3 cut(s)	77, 106, 199
AjnI	CCWGG	2 cut(s)	486, 516
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	4 cut(s)	193, 481, 548, 560
AluI	AGCT	4 cut(s)	193, 481, 548, 560
Alw21I	GWGCWC	2 cut(s)	143, 403
AlwNI	CAGNNNCTG	2 cut(s)	117, 563
AoxI	GGCC	1 cut(s)	270
ApaI	GGGCCC	1 cut(s)	274
ApeKI	GCWGC	8 cut(s)	111, 190, 411, 437, 521, 524, 560, 563
ApoI	RAATTY	2 cut(s)	211, 223
AspS9I	GGNCC	3 cut(s)	270, 271, 619
AsuHPI	GGTGA	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	274
Bbv12I	GWGCWC	2 cut(s)	143, 403
BbvI	GCAGC	8 cut(s)	123, 202, 398, 424, 508, 511, 547, 550
BccI	CCATC	2 cut(s)	152, 440
BciT130I	CCWGG	2 cut(s)	488, 518
BfaI	CTAG	2 cut(s)	308, 545
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	8 cut(s)	112, 191, 412, 438, 522, 525, 561, 564
BlsI	GCNGC	8 cut(s)	113, 192, 413, 439, 523, 526, 562, 565
Bme1390I	CCNGG	2 cut(s)	488, 518
Bme18I	GGWCC	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	270, 271, 619
BmiI	GGNNCC	3 cut(s)	272, 273, 304
BmrFI	CCNGG	2 cut(s)	488, 518
BpmI	CTGGAG	3 cut(s)	368, 500, 509
Bpu10I	CCTNAGC	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	488, 518
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	163, 428
BseMII	CTCAG	4 cut(s)	234, 491, 543, 570
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	8 cut(s)	123, 202, 398, 424, 508, 511, 547, 550
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	2 cut(s)	143, 403
BslFI	GGGAC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	272
Bsp120I	GGGCCC	1 cut(s)	270
Bsp1286I	GDGCHC	3 cut(s)	143, 274, 403
Bsp19I	CCATGG	1 cut(s)	153
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	4 cut(s)	235, 490, 544, 571
BspLI	GGNNCC	3 cut(s)	272, 273, 304
BspMAI	CTGCAG	1 cut(s)	568
BspQI	GCTCTTC	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	488, 518
Bst4CI	ACNGT	2 cut(s)	49, 337
Bst6I	CTCTTC	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	464, 558
BstDEI	CTNAG	5 cut(s)	243, 477, 552, 579, 615
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	163, 428
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 117, 569
BstNI	CCWGG	2 cut(s)	488, 518
BstSCI	CCNGG	2 cut(s)	486, 516
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	8 cut(s)	123, 202, 398, 424, 508, 511, 547, 550
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	163, 428
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 344
Cac8I	GCNNGC	2 cut(s)	464, 558
CaiI	CAGNNNCTG	2 cut(s)	117, 563
Cfr13I	GGNCC	3 cut(s)	270, 271, 619
CviAII	CATG	5 cut(s)	154, 292, 387, 404, 509
DdeI	CTNAG	5 cut(s)	243, 477, 552, 579, 615
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	376
EcoO109I	RGGNCCY	2 cut(s)	270, 271
EcoRII	CCWGG	2 cut(s)	486, 516
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	5 cut(s)	157, 295, 390, 407, 512
FaiI	YATR	9 cut(s)	54, 65, 93, 155, 293, 388, 405, 435, 510
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	5 cut(s)	153, 291, 386, 403, 508
Fnu4HI	GCNGC	8 cut(s)	112, 191, 412, 438, 522, 525, 561, 564
FokI	GGATG	2 cut(s)	170, 415
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	8 cut(s)	112, 191, 412, 438, 522, 525, 561, 564
FspBI	CTAG	2 cut(s)	308, 545
GluI	GCNGC	8 cut(s)	112, 191, 412, 438, 522, 525, 561, 564
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	3 cut(s)	368, 500, 509
HaeIII	GGCC	1 cut(s)	272
Hin1II	CATG	5 cut(s)	157, 295, 390, 407, 512
HinfI	GANTC	4 cut(s)	162, 203, 611, 647
HphI	GGTGA	1 cut(s)	367
Hpy188III	TCNNGA	5 cut(s)	20, 133, 300, 443, 578
HpyAV	CCTTC	2 cut(s)	71, 346
HpyCH4III	ACNGT	2 cut(s)	49, 337
HpyCH4V	TGCA	9 cut(s)	30, 111, 120, 174, 320, 462, 527, 542, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 117, 569
HpyF3I	CTNAG	5 cut(s)	243, 477, 552, 579, 615
Hsp92II	CATG	5 cut(s)	157, 295, 390, 407, 512
LguI	GCTCTTC	1 cut(s)	488
Lsp1109I	GCAGC	8 cut(s)	123, 202, 398, 424, 508, 511, 547, 550
MaeI	CTAG	2 cut(s)	308, 545
MaeIII	GTNAC	2 cut(s)	355, 374
MboII	GAAGA	1 cut(s)	475
MhlI	GDGCHC	3 cut(s)	143, 274, 403
MluCI	AATT	3 cut(s)	211, 223, 499
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	8 cut(s)	160, 176, 189, 298, 358, 524, 585, 637
MseI	TTAA	1 cut(s)	652
MspA1I	CMGCKG	1 cut(s)	560
MspR9I	CCNGG	2 cut(s)	488, 518
MvaI	CCWGG	2 cut(s)	488, 518
MwoI	GCNNNNNNNGC	3 cut(s)	108, 117, 569
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	5 cut(s)	157, 295, 390, 407, 512
NlaIV	GGNNCC	3 cut(s)	272, 273, 304
NmuCI	GTSAC	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	203, 611, 647
PfoI	TCCNGGA	1 cut(s)	486
PkrI	GCNGC	8 cut(s)	113, 192, 413, 439, 523, 526, 562, 565
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	486, 516
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	486, 516
PspN4I	GGNNCC	3 cut(s)	272, 273, 304
PspOMI	GGGCCC	1 cut(s)	270
PspPI	GGNCC	3 cut(s)	270, 271, 619
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	2 cut(s)	117, 563
PvuII	CAGCTG	1 cut(s)	560
SapI	GCTCTTC	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	8 cut(s)	112, 191, 412, 438, 522, 525, 561, 564
Sau96I	GGNCC	3 cut(s)	270, 271, 619
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	488, 518
SduI	GDGCHC	3 cut(s)	143, 274, 403
SetI	ASST	9 cut(s)	88, 146, 181, 195, 357, 398, 483, 550, 562
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	619
Sse9I	AATT	3 cut(s)	211, 223, 499
SspMI	CTAG	2 cut(s)	308, 545
StyD4I	CCNGG	2 cut(s)	486, 516
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	49, 337
TaqI	TCGA	1 cut(s)	134
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	3 cut(s)	211, 223, 499
TfiI	GAWTC	3 cut(s)	203, 611, 647
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TscAI	CASTG	2 cut(s)	122, 351
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	8 cut(s)	111, 190, 411, 437, 521, 524, 560, 563
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	270, 417
TspRI	CASTG	2 cut(s)	122, 351
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	2 cut(s)	211, 223
XspI	CTAG	2 cut(s)	308, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.