Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010163

Physical Location & Seq

Genomic Coordinates Reverse (-)

20424546 .. 20426617

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1140900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGTTTACAGGAACTTTGGATAAATGCAAGGCCTGTGATAAGACTGTTTATGTAACTGAAATGTTGTCCCTTGAAGGAGTACCTTATCATAAATCCTGCTTCAAATGCAGCCACTGCAAGGGATTTCTCTCGATGAGCACCTATTCCTCCATGGATGGAATCCTCTACTGTAAACCTCATTTCGAGCAACTTTTCAAGGAATCTGGGAATTTCAGTAAGAATTTCGCAAAATCTGCTGAGAAGCAGGGTGAACAACTGAATAGGGTCCCCAGCAAGCTCTCTGCCTTGTTTTCTGGAACCCAAGACAAGTGTGCAACTTGCTCAAAGACAGTCTATCCGCTGGAGAAGGTGACATTGGAGGGAGAAAGTTACCACAAGTCATGCTTCAGGTGTGCTCATGGGGGCTGTGCCCTTACACATTCATCGTATGCAGCTCTTGATGGAGTCCTTTACTGCAAGCACCATTTTTCTCAGCTCTTCCTAGAGAAAGGGAACTACAGCCATGTCCTCCAGGCTGCTGCAAATAGGAAAAATGCCACATCTGCCGAAGCAACTGAGGAGGCAGCTGCCGCTGCCAGCGCCGCCCCCAAGGAGGCACAACCAGAACCAGAACCAGAAACAGAACCTAAGGACCAGACTGACCAGCCACCTGAGGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

222

Amino Acids

24.19

Weight (kDa)

6.31

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	6.1e-13	LIM domain
LIM	PF00412	105 - 161	1.4e-11	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01780 AT2G45800 AT2G45800
fragaria_vesca	FvH4_7g13840 FvH4_7g13840
malus_domestica	MD01G1054500.v1.1 MD07G1140900.v1.1
prunus_persica	Prupe.2G164200_v2.0.a1 Prupe.2G164200_v2.0.a1
pyrus_communis	pycom01g07970
rosa_chinensis	RchiOBHm_Chr1g0354051
rosa_laevigata	RLG00000028231
rosa_multiflora	Rmu_sc0004632.1_g000005 Rmu_sc0006777.1_g000007
rosa_roxburghii	Rroxscaffold_4G00301270
rosa_rugosa	Rorug01G0240600
rosa_samantha	Rh1AG251700 Rh1BG223500 Rh1CG236100 Rh1DG250400
rosa_wichuraiana	Rw1G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	341, 573, 585
AcsI	RAATTY	2 cut(s)	211, 223
AcuI	CTGAAG	1 cut(s)	373
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	121, 595
AgsI	TTSAA	3 cut(s)	77, 106, 199
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	4 cut(s)	280, 437, 478, 569
AluI	AGCT	4 cut(s)	280, 437, 478, 569
Alw21I	GWGCWC	2 cut(s)	143, 400
AlwNI	CAGNNNCTG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	7 cut(s)	111, 434, 518, 521, 566, 569, 575
ApoI	RAATTY	2 cut(s)	211, 223
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	2 cut(s)	268, 634
AsuHPI	GGTGA	2 cut(s)	263, 364
AvaII	GGWCC	2 cut(s)	268, 634
AxyI	CCTNAGG	2 cut(s)	630, 654
BaeGI	GKGCMC	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	143, 400
BbvI	GCAGC	7 cut(s)	123, 446, 505, 508, 556, 562, 578
BccI	CCATC	2 cut(s)	152, 437
BciT130I	CCWGG	1 cut(s)	515
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	499
BfoI	RGCGCY	1 cut(s)	585
BisI	GCNGC	9 cut(s)	112, 435, 519, 522, 567, 570, 573, 576, 585
BlsI	GCNGC	9 cut(s)	113, 436, 520, 523, 568, 571, 574, 577, 586
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	2 cut(s)	268, 634
BmgT120I	GGNCC	2 cut(s)	268, 634
BmiI	GGNNCC	3 cut(s)	269, 270, 301
BmrFI	CCNGG	1 cut(s)	515
BpmI	CTGGAG	2 cut(s)	365, 497
BsaJI	CCNNGG	2 cut(s)	153, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 595
Bse21I	CCTNAGG	2 cut(s)	630, 654
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	153, 591
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	121, 595
BseMII	CTCAG	4 cut(s)	231, 488, 549, 645
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	7 cut(s)	123, 446, 505, 508, 556, 562, 578
BseYI	CCCAGC	1 cut(s)	272
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	143, 400
BslFI	GGGAC	2 cut(s)	55, 254
BslI	CCNNNNNNNGG	2 cut(s)	121, 595
BsmFI	GGGAC	2 cut(s)	55, 254
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	3 cut(s)	143, 400, 415
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	3 cut(s)	341, 573, 585
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	4 cut(s)	232, 487, 550, 646
BspLI	GGNNCC	3 cut(s)	269, 270, 301
BspQI	GCTCTTC	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	153, 591
BssT1I	CCWWGG	2 cut(s)	153, 591
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	3 cut(s)	49, 173, 334
Bst6I	CTCTTC	1 cut(s)	485
BstAPI	GCANNNNNTGC	2 cut(s)	117, 236
BstC8I	GCNNGC	3 cut(s)	278, 461, 580
BstDEI	CTNAG	5 cut(s)	240, 474, 558, 630, 654
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	584
BstMWI	GCNNNNNNNGC	8 cut(s)	108, 117, 236, 545, 572, 575, 581, 584
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	7 cut(s)	123, 446, 505, 508, 556, 562, 578
Bsu36I	CCTNAGG	2 cut(s)	630, 654
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	3 cut(s)	278, 461, 580
CaiI	CAGNNNCTG	1 cut(s)	117
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	2 cut(s)	268, 634
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	4 cut(s)	154, 384, 401, 506
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	5 cut(s)	240, 474, 558, 630, 654
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	153, 591
Eco147I	AGGCCT	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	268, 634
Eco57I	CTGAAG	1 cut(s)	373
Eco81I	CCTNAGG	2 cut(s)	630, 654
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	2 cut(s)	153, 591
ErhI	CCWWGG	2 cut(s)	153, 591
FaeI	CATG	4 cut(s)	157, 387, 404, 509
FaiI	YATR	7 cut(s)	54, 93, 155, 385, 402, 432, 507
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	2 cut(s)	55, 254
FatI	CATG	4 cut(s)	153, 383, 400, 505
Fnu4HI	GCNGC	9 cut(s)	112, 435, 519, 522, 567, 570, 573, 576, 585
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	9 cut(s)	112, 435, 519, 522, 567, 570, 573, 576, 585
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	9 cut(s)	112, 435, 519, 522, 567, 570, 573, 576, 585
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	2 cut(s)	365, 497
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	4 cut(s)	157, 387, 404, 509
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HinfI	GANTC	4 cut(s)	162, 203, 447, 659
HphI	GGTGA	2 cut(s)	263, 364
Hpy166II	GTNNAC	3 cut(s)	9, 176, 254
Hpy188III	TCNNGA	3 cut(s)	133, 297, 440
Hpy8I	GTNNAC	3 cut(s)	9, 176, 254
HpyAV	CCTTC	2 cut(s)	71, 343
HpyCH4III	ACNGT	3 cut(s)	49, 173, 334
HpyCH4V	TGCA	7 cut(s)	30, 111, 120, 317, 434, 459, 524
HpyF10VI	GCNNNNNNNGC	8 cut(s)	108, 117, 236, 545, 572, 575, 581, 584
HpyF3I	CTNAG	5 cut(s)	240, 474, 558, 630, 654
Hsp92II	CATG	4 cut(s)	157, 387, 404, 509
HspAI	GCGC	1 cut(s)	582
KflI	GGGWCCC	1 cut(s)	268
LguI	GCTCTTC	1 cut(s)	485
Lsp1109I	GCAGC	7 cut(s)	123, 446, 505, 508, 556, 562, 578
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	3 cut(s)	55, 352, 371
MboII	GAAGA	1 cut(s)	472
MhlI	GDGCHC	3 cut(s)	143, 400, 415
MluCI	AATT	2 cut(s)	211, 223
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	9 cut(s)	160, 176, 189, 355, 521, 553, 556, 589, 649
MseI	TTAA	1 cut(s)	664
MspA1I	CMGCKG	3 cut(s)	343, 569, 575
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	8 cut(s)	108, 117, 236, 545, 572, 575, 581, 584
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	4 cut(s)	157, 387, 404, 509
NlaIV	GGNNCC	3 cut(s)	269, 270, 301
NmuCI	GTSAC	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	485
PfeI	GAWTC	3 cut(s)	162, 203, 659
PkrI	GCNGC	9 cut(s)	113, 436, 520, 523, 568, 571, 574, 577, 586
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	3 cut(s)	269, 270, 301
PspPI	GGNCC	2 cut(s)	268, 634
PspPPI	RGGWCCY	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	664
SatI	GCNGC	9 cut(s)	112, 435, 519, 522, 567, 570, 573, 576, 585
Sau96I	GGNCC	2 cut(s)	268, 634
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	3 cut(s)	143, 400, 415
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	2 cut(s)	268, 634
Sse9I	AATT	2 cut(s)	211, 223
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	3 cut(s)	341, 573, 585
SspMI	CTAG	1 cut(s)	485
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	2 cut(s)	153, 591
TaaI	ACNGT	3 cut(s)	49, 173, 334
TaqI	TCGA	2 cut(s)	134, 186
TasI	AATT	2 cut(s)	211, 223
TauI	GCSGC	2 cut(s)	575, 587
TfiI	GAWTC	3 cut(s)	162, 203, 659
Tru1I	TTAA	1 cut(s)	664
Tru9I	TTAA	1 cut(s)	664
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	7 cut(s)	111, 434, 518, 521, 566, 569, 575
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	268, 634
XapI	RAATTY	2 cut(s)	211, 223
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.