Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010163

Physical Location & Seq

Genomic Coordinates Reverse (-)

18857941 .. 18859278

Gene Structure 1338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCGTTTACAGGAACATTGGATAAATGCAAGGCCTGTGACAAAACCGTGTACGTGATGGATTTGTTAACATTAGAGGGTAATACTTATCACAAATCATGTTTCAGATGCACCCATTGCAAAGGCACTCTCGTGATAAGCAATTACTCATCAATGGATGGAGTTCTTTACTGTAAGCCACACTTCGAACAGCTTTTCAAAGAATCTGGCAATTACAGCAAGAATTTTCAGGCAGGAAAGACCGAGAAGCCCAATGATCATCTGACTCGAACTCCAAGCAAGTTATCATCATTCTTCAGTGGAACACAAGACAAATGTGCGACTTGTAAGAAGACGGTTTACCCACTTGAGAAAGTAACAATGGAAGGAGAAAGTTACCACAAGACTTGCTTCAGGTGCACACACAGTGGTTGTCCTTTGACTCACTCTTCTTACGCTTCTCTTAATGGCGTCCTCTACTGTAAAGTCCACTTCAATCAGCTCTTTCTCGAGAAAGGCAGTTACAATCACGTCCATCAAGCCGCTGCTAACCACCGTCGATCCGCCTCTTCTGGTGGCGCTTCTCCTCCTTCTGATGATCACAAACCTGACGACACCGCCTCAATTCCCGAAGCAAAAGAAGATGACGCTGCCCCTGAAGCTGCAGGAGAAGAGGAGCCTGAGCCGGTCGTTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

226

Amino Acids

24.94

Weight (kDa)

6.45

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	75 - 131	2.3e-11	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01780 AT2G45800 AT2G45800
fragaria_vesca	FvH4_7g13840 FvH4_7g13840
malus_domestica	MD01G1054500.v1.1 MD07G1140900.v1.1
prunus_persica	Prupe.2G164200_v2.0.a1 Prupe.2G164200_v2.0.a1
pyrus_communis	pycom01g07970
rosa_chinensis	RchiOBHm_Chr1g0354051
rosa_laevigata	RLG00000028231
rosa_multiflora	Rmu_sc0004632.1_g000005 Rmu_sc0006777.1_g000007
rosa_roxburghii	Rroxscaffold_4G00301270
rosa_rugosa	Rorug01G0240600
rosa_samantha	Rh1AG251700 Rh1BG223500 Rh1CG236100 Rh1DG250400
rosa_wichuraiana	Rw1G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	522, 543, 597
AclWI	GGATC	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	3 cut(s)	280, 376, 657
AcyI	GRCGYC	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	199, 475
AjiI	CACGTC	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	3 cut(s)	193, 481, 641
AluI	AGCT	3 cut(s)	193, 481, 641
Alw21I	GWGCWC	1 cut(s)	401
Alw44I	GTGCAC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	534
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	397
ApeKI	GCWGC	3 cut(s)	524, 629, 641
ApoI	RAATTY	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	186
AvaI	CYCGRG	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	401
BarI	GAAGNNNNNNTAC	2 cut(s)	323, 355
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	511, 616, 628
BccI	CCATC	3 cut(s)	52, 152, 522
BclI	TGATCA	2 cut(s)	256, 577
BfmI	CTRYAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	561
BisI	GCNGC	4 cut(s)	522, 525, 630, 642
BlsI	GCNGC	4 cut(s)	523, 526, 631, 643
BmeT110I	CYCGRG	1 cut(s)	488
BmgBI	CACGTC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	657
BmsI	GCATC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu14I	TTCGAA	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	450
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bse118I	RCCGGY	1 cut(s)	664
Bse3DI	GCAATG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	651
BseRI	GAGGAG	2 cut(s)	555, 668
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	3 cut(s)	511, 616, 628
Bsh1285I	CGRYCG	1 cut(s)	669
BshFI	GGCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	669
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	665
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	488
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	3 cut(s)	256, 539, 577
BspACI	CCGC	3 cut(s)	522, 543, 597
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	657
BspMAI	CTGCAG	1 cut(s)	646
BspPI	GGATC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	664
BssAI	RCCGGY	1 cut(s)	664
BssMI	GATC	3 cut(s)	256, 539, 577
BssNI	GRCGYC	1 cut(s)	450
BssSI	CACGAG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	131
Bst4CI	ACNGT	6 cut(s)	49, 173, 337, 407, 461, 536
Bst6I	CTCTTC	3 cut(s)	433, 553, 645
BstACI	GRCGYC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	3 cut(s)	259, 542, 580
BstMBI	GATC	3 cut(s)	256, 539, 577
BstMCI	CGRYCG	1 cut(s)	669
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 216, 396, 638
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	511, 616, 628
BstV2I	GAAGAC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	35
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	304, 412
CfoI	GCGC	1 cut(s)	560
Cfr10I	RCCGGY	1 cut(s)	664
CseI	GACGC	2 cut(s)	439, 635
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	368, 403
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	9 cut(s)	35, 178, 193, 250, 481, 521, 641, 658, 664
CviKI_1	RGCY	9 cut(s)	35, 178, 193, 250, 481, 521, 641, 658, 664
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	3 cut(s)	258, 541, 579
DpnII	GATC	3 cut(s)	256, 539, 577
DraIII	CACNNNGTG	1 cut(s)	407
Eam1104I	CTCTTC	3 cut(s)	433, 553, 645
EarI	CTCTTC	3 cut(s)	433, 553, 645
EciI	GGCGGA	1 cut(s)	532
Eco147I	AGGCCT	1 cut(s)	35
Eco57I	CTGAAG	3 cut(s)	280, 376, 657
Eco88I	CYCGRG	1 cut(s)	488
FaeI	CATG	1 cut(s)	102
FaiI	YATR	1 cut(s)	100
FalI	AAGNNNNNCTT	4 cut(s)	167, 199, 374, 406
FatI	CATG	1 cut(s)	98
FbaI	TGATCA	2 cut(s)	256, 577
Fnu4HI	GCNGC	4 cut(s)	522, 525, 630, 642
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	4 cut(s)	522, 525, 630, 642
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	4 cut(s)	522, 525, 630, 642
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	665
HgaI	GACGC	2 cut(s)	439, 635
HhaI	GCGC	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HinfI	GANTC	4 cut(s)	203, 265, 421, 674
HpaI	GTTAAC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	665
Hpy166II	GTNNAC	6 cut(s)	9, 52, 69, 340, 399, 469
Hpy188I	TCNGA	3 cut(s)	107, 264, 574
Hpy188III	TCNNGA	5 cut(s)	133, 488, 490, 608, 678
Hpy8I	GTNNAC	6 cut(s)	9, 52, 69, 340, 399, 469
Hpy99I	CGWCG	1 cut(s)	540
HpyAV	CCTTC	2 cut(s)	359, 579
HpyCH4III	ACNGT	6 cut(s)	49, 173, 337, 407, 461, 536
HpyCH4IV	ACGT	2 cut(s)	54, 510
HpyCH4V	TGCA	5 cut(s)	30, 111, 120, 399, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 216, 396, 638
HpyF3I	CTNAG	1 cut(s)	660
HpySE526I	ACGT	2 cut(s)	54, 510
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	102
HspAI	GCGC	1 cut(s)	558
Ksp22I	TGATCA	2 cut(s)	256, 577
KspAI	GTTAAC	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	256, 539, 577
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	3 cut(s)	511, 616, 628
LweI	GCATC	1 cut(s)	98
MaeII	ACGT	2 cut(s)	54, 510
MaeIII	GTNAC	4 cut(s)	38, 355, 374, 500
MalI	GATC	3 cut(s)	258, 541, 579
MboI	GATC	3 cut(s)	256, 539, 577
MboII	GAAGA	6 cut(s)	286, 343, 420, 540, 632, 662
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	4 cut(s)	142, 211, 223, 603
MlyI	GAGTC	2 cut(s)	259, 415
MnlI	CCTC	6 cut(s)	70, 464, 556, 576, 610, 646
MseI	TTAA	2 cut(s)	68, 444
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	665
MwoI	GCNNNNNNNGC	4 cut(s)	117, 216, 396, 638
NdeII	GATC	3 cut(s)	256, 539, 577
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	186
OliI	CACNNNNGTG	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	523, 526, 631, 643
PleI	GAGTC	2 cut(s)	259, 415
PpsI	GAGTC	2 cut(s)	259, 415
Ppu21I	YACGTR	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	657
PstI	CTGCAG	1 cut(s)	646
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	68, 444
SatI	GCNGC	4 cut(s)	522, 525, 630, 642
Sau3AI	GATC	3 cut(s)	256, 539, 577
SchI	GAGTC	2 cut(s)	259, 415
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	7 cut(s)	57, 195, 398, 483, 513, 589, 643
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	642
Sfr274I	CTCGAG	1 cut(s)	488
SfuI	TTCGAA	1 cut(s)	186
SlaI	CTCGAG	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	347, 488
SmoI	CTYRAG	2 cut(s)	347, 488
Sse9I	AATT	4 cut(s)	142, 211, 223, 603
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	3 cut(s)	522, 543, 597
StuI	AGGCCT	1 cut(s)	35
TaaI	ACNGT	6 cut(s)	49, 173, 337, 407, 461, 536
TaiI	ACGT	2 cut(s)	57, 513
TaqI	TCGA	4 cut(s)	186, 268, 489, 538
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	4 cut(s)	142, 211, 223, 603
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	68, 444
Tru9I	TTAA	2 cut(s)	68, 444
TscAI	CASTG	2 cut(s)	304, 412
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	3 cut(s)	524, 629, 641
Tsp45I	GTSAC	1 cut(s)	38
TspRI	CASTG	2 cut(s)	304, 412
VneI	GTGCAC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.