Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010163

Physical Location & Seq

Genomic Coordinates Reverse (-)

20355800 .. 20357427

Gene Structure 1628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCATTTACAGGAACTTTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGATATGTTGTCCCTTGAAGGAGTACCTTATCATAAATCCTGCTTCAAATGCAGCCACTGCAAAGGGTTTCTCTCGATGAGCACCTATTCCTCCATGGATGGAATCCTCTATTGCAAACCTCATTTTGAGCAGCTTTTCAAGGAATCTGGGAATTTCAGCAAGAATTTTGCAAAGTCCGCTGAGAAGCAGAGTGAAGTGCTGAATAGGGCACCCAGCAAACTCTCTTCCATGTTCTCTGGAACCCAAGACAAGTGTGCAACTTGCTCAAAGACAGTCTATCCACTGGAGAAGGTGACACTGGAGGGAGAAAGTTACCACAAGACATGCTTCAGGTGTGCTCATGGGGGCTGTCCCCTTACACATTCATCATATGCTGCTCTTGATGGAATCCTTTACTGCAAGCACCATTTCGCTCAGCTCTTCATGGAGAAAGGAAATTACAGCCATGTCCTCCAGGCTGCAAAGAAAAATGCCACACAACCTAAAGAACCAGCTGCTGGAGAGCCCGAAGCCCCTCCAGCCGCAGAACCAGAGCCAGAACCAGAACAACCTAAGGACCAGACTGACCAGTCAGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

214

Amino Acids

23.55

Weight (kDa)

6.5

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	3.3e-12	LIM domain
LIM	PF00412	105 - 161	7.8e-12	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01780 AT2G45800 AT2G45800
fragaria_vesca	FvH4_7g13840 FvH4_7g13840
malus_domestica	MD01G1054500.v1.1 MD07G1140900.v1.1
prunus_persica	Prupe.2G164200_v2.0.a1 Prupe.2G164200_v2.0.a1
pyrus_communis	pycom01g07970
rosa_chinensis	RchiOBHm_Chr1g0354051
rosa_laevigata	RLG00000028231
rosa_multiflora	Rmu_sc0004632.1_g000005 Rmu_sc0006777.1_g000007
rosa_roxburghii	Rroxscaffold_4G00301270
rosa_rugosa	Rorug01G0240600
rosa_samantha	Rh1AG251700 Rh1BG223500 Rh1CG236100 Rh1DG250400
rosa_wichuraiana	Rw1G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	557
AciI	CCGC	2 cut(s)	237, 582
AcsI	RAATTY	2 cut(s)	211, 223
AcuI	CTGAAG	1 cut(s)	373
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	77, 106, 199
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	3 cut(s)	193, 478, 554
AluI	AGCT	3 cut(s)	193, 478, 554
Alw21I	GWGCWC	2 cut(s)	143, 400
AlwNI	CAGNNNCTG	2 cut(s)	117, 557
ApeKI	GCWGC	5 cut(s)	111, 190, 434, 518, 554
ApoI	RAATTY	2 cut(s)	211, 223
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	616
AxyI	CCTNAGG	1 cut(s)	612
BaeGI	GKGCMC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	143, 400
BbvI	GCAGC	5 cut(s)	123, 202, 421, 505, 541
BccI	CCATC	2 cut(s)	152, 437
BciT130I	CCWGG	1 cut(s)	515
BisI	GCNGC	6 cut(s)	112, 191, 435, 519, 555, 582
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	6 cut(s)	113, 192, 436, 520, 556, 583
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	2 cut(s)	270, 301
BmrFI	CCNGG	1 cut(s)	515
BpmI	CTGGAG	5 cut(s)	365, 380, 497, 561, 579
Bpu1102I	GCTNAGC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	3 cut(s)	348, 363, 628
Bse21I	CCTNAGG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	2 cut(s)	231, 488
BseNI	ACTGG	3 cut(s)	348, 363, 628
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	5 cut(s)	123, 202, 421, 505, 541
BseYI	CCCAGC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	143, 400
BslFI	GGGAC	2 cut(s)	55, 396
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmFI	GGGAC	2 cut(s)	55, 396
Bsp1286I	GDGCHC	4 cut(s)	143, 271, 400, 567
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	237, 582
BspCNI	CTCAG	2 cut(s)	232, 487
BspLI	GGNNCC	2 cut(s)	270, 301
BspQI	GCTCTTC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	268
BsrI	ACTGG	3 cut(s)	348, 363, 628
BssECI	CCNNGG	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	49, 334
Bst6I	CTCTTC	3 cut(s)	289, 485, 630
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	3 cut(s)	240, 474, 612
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 117, 236, 578
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	5 cut(s)	123, 202, 421, 505, 541
Bsu36I	CCTNAGG	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	3 cut(s)	115, 341, 356
Cac8I	GCNNGC	1 cut(s)	461
CaiI	CAGNNNCTG	2 cut(s)	117, 557
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	6 cut(s)	154, 289, 384, 401, 484, 506
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	3 cut(s)	240, 474, 612
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
Eam1104I	CTCTTC	3 cut(s)	289, 485, 630
EarI	CTCTTC	3 cut(s)	289, 485, 630
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	6 cut(s)	157, 292, 387, 404, 487, 509
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	2 cut(s)	55, 396
FatI	CATG	6 cut(s)	153, 288, 383, 400, 483, 505
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	6 cut(s)	112, 191, 435, 519, 555, 582
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	6 cut(s)	112, 191, 435, 519, 555, 582
GluI	GCNGC	6 cut(s)	112, 191, 435, 519, 555, 582
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	5 cut(s)	365, 380, 497, 561, 579
Hin1II	CATG	6 cut(s)	157, 292, 387, 404, 487, 509
HinfI	GANTC	3 cut(s)	162, 203, 447
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	634
Hpy188III	TCNNGA	3 cut(s)	133, 297, 440
HpyAV	CCTTC	2 cut(s)	71, 343
HpyCH4III	ACNGT	2 cut(s)	49, 334
HpyCH4V	TGCA	8 cut(s)	30, 111, 120, 174, 230, 317, 459, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 117, 236, 578
HpyF3I	CTNAG	3 cut(s)	240, 474, 612
Hsp92II	CATG	6 cut(s)	157, 292, 387, 404, 487, 509
LguI	GCTCTTC	1 cut(s)	485
Lsp1109I	GCAGC	5 cut(s)	123, 202, 421, 505, 541
MaeIII	GTNAC	2 cut(s)	352, 371
MboII	GAAGA	2 cut(s)	276, 472
MhlI	GDGCHC	4 cut(s)	143, 271, 400, 567
MluCI	AATT	3 cut(s)	211, 223, 496
MnlI	CCTC	6 cut(s)	160, 176, 189, 355, 521, 585
MspA1I	CMGCKG	2 cut(s)	239, 554
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	4 cut(s)	108, 117, 236, 578
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	430
NlaIII	CATG	6 cut(s)	157, 292, 387, 404, 487, 509
NlaIV	GGNNCC	2 cut(s)	270, 301
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	485
PfeI	GAWTC	3 cut(s)	162, 203, 447
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	6 cut(s)	113, 192, 436, 520, 556, 583
Psp6I	CCWGG	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	270, 301
PspPI	GGNCC	1 cut(s)	616
PstNI	CAGNNNCTG	2 cut(s)	117, 557
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	485
SatI	GCNGC	6 cut(s)	112, 191, 435, 519, 555, 582
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	4 cut(s)	143, 271, 400, 567
SinI	GGWCC	1 cut(s)	616
Sse9I	AATT	3 cut(s)	211, 223, 496
SsiI	CCGC	2 cut(s)	237, 582
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	49, 334
TaqI	TCGA	1 cut(s)	134
TasI	AATT	3 cut(s)	211, 223, 496
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	3 cut(s)	162, 203, 447
TscAI	CASTG	3 cut(s)	122, 348, 363
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	5 cut(s)	111, 190, 434, 518, 554
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	414, 472
TspRI	CASTG	3 cut(s)	122, 348, 363
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	616
XapI	RAATTY	2 cut(s)	211, 223
XceI	RCATGY	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.