Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010163

Physical Location & Seq

Genomic Coordinates Forward (+)

15895562 .. 15897359

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1054500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGTTTACAGGAACTCTGGATAAATGCAGCGCCTGTGATAAGACTGTTTATGTAACTGAAATGTTGTCCCTTGAAGGCGTACCTTATCATAAATCCTGCTTCAAATGCAGCCACTGCAAAGGATTTCTCTCGATGAGCACCTATTCCTCCATGGATGGAGTCCTCTACTGCAAACCTCATTTCGAGCAGCTTTTCAAGGAATCTGGGAATTTCGGCAAGAATTTCGCAAAATCGGCCGAGAAGCAGGGCGAACAACTGAATAGGGCCCCCAGCAAGCTCTCTTCCATGTTCTGTGGAACCCAAGACAAGTGTGCAACTTGCTCAAAGACAGTCTATCCACTGGAGAAGGTGACATTGGAGGGAGAAAGTTACCACAAGTCATGCTTCAGGTGTGCTCATGGGGGCTGTCCCCTTACACATTCATCCTATGCAGCTCTTGATGGAGTCCTTTACTGCAAGCATCATTTTTCTCAGCTCTTCCTGGAGAAAGGGAACTACAGCCATGTCCTCCAGGCTGCTGCAAATAGGAAAAATGCCACATCTGCTGAAGCAACTGAGGAAGCAGCTGCCGCTGCCGAGGCCGCCTCCAAGGAGGCGCAACCAGAACCAGAATCAGAATCTAAGGACCAGACTGACCAGCCACCTGAGGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

220

Amino Acids

23.94

Weight (kDa)

6.14

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	2.4e-13	LIM domain
LIM	PF00412	105 - 161	3.5e-12	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01780 AT2G45800 AT2G45800
fragaria_vesca	FvH4_7g13840 FvH4_7g13840
malus_domestica	MD01G1054500.v1.1 MD07G1140900.v1.1
prunus_persica	Prupe.2G164200_v2.0.a1 Prupe.2G164200_v2.0.a1
pyrus_communis	pycom01g07970
rosa_chinensis	RchiOBHm_Chr1g0354051
rosa_laevigata	RLG00000028231
rosa_multiflora	Rmu_sc0004632.1_g000005 Rmu_sc0006777.1_g000007
rosa_roxburghii	Rroxscaffold_4G00301270
rosa_rugosa	Rorug01G0240600
rosa_samantha	Rh1AG251700 Rh1BG223500 Rh1CG236100 Rh1DG250400
rosa_wichuraiana	Rw1G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	573, 585
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	211, 223
AcuI	CTGAAG	2 cut(s)	373, 570
AfaI	GTAC	1 cut(s)	84
AgsI	TTSAA	3 cut(s)	77, 106, 199
AjnI	CCWGG	2 cut(s)	483, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	5 cut(s)	193, 280, 437, 478, 569
AluI	AGCT	5 cut(s)	193, 280, 437, 478, 569
Alw21I	GWGCWC	2 cut(s)	143, 400
AlwNI	CAGNNNCTG	2 cut(s)	36, 117
AoxI	GGCC	3 cut(s)	237, 267, 582
ApaI	GGGCCC	1 cut(s)	271
ApeKI	GCWGC	9 cut(s)	30, 111, 190, 434, 518, 521, 566, 569, 575
ApoI	RAATTY	2 cut(s)	211, 223
AspLEI	GCGC	2 cut(s)	35, 601
AspS9I	GGNCC	3 cut(s)	267, 268, 628
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	628
AxyI	CCTNAGG	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	271
Bbv12I	GWGCWC	2 cut(s)	143, 400
BbvI	GCAGC	9 cut(s)	42, 123, 202, 446, 505, 508, 556, 562, 578
BccI	CCATC	2 cut(s)	152, 437
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	2 cut(s)	485, 515
BfmI	CTRYAG	1 cut(s)	499
BfoI	RGCGCY	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	485, 515
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	3 cut(s)	267, 268, 628
BmiI	GGNNCC	3 cut(s)	269, 270, 301
BmrFI	CCNGG	2 cut(s)	485, 515
BmsI	GCATC	1 cut(s)	472
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	3 cut(s)	365, 497, 506
BsaJI	CCNNGG	3 cut(s)	153, 579, 591
Bse1I	ACTGG	1 cut(s)	348
Bse21I	CCTNAGG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	485, 515
BseDI	CCNNGG	3 cut(s)	153, 579, 591
BseGI	GGATG	2 cut(s)	163, 425
BseMII	CTCAG	3 cut(s)	488, 549, 639
BseNI	ACTGG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	271
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	9 cut(s)	42, 123, 202, 446, 505, 508, 556, 562, 578
BseYI	CCCAGC	1 cut(s)	272
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	239, 269, 584
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	143, 400
BslFI	GGGAC	2 cut(s)	55, 396
BsmFI	GGGAC	2 cut(s)	55, 396
BsnI	GGCC	3 cut(s)	239, 269, 584
Bsp120I	GGGCCC	1 cut(s)	267
Bsp1286I	GDGCHC	3 cut(s)	143, 271, 400
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	573, 585
BspANI	GGCC	3 cut(s)	239, 269, 584
BspCNI	CTCAG	3 cut(s)	487, 550, 640
BspLI	GGNNCC	3 cut(s)	269, 270, 301
BspQI	GCTCTTC	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	153, 579, 591
BssT1I	CCWWGG	2 cut(s)	153, 591
Bst2UI	CCWGG	2 cut(s)	485, 515
Bst4CI	ACNGT	2 cut(s)	49, 334
Bst6I	CTCTTC	2 cut(s)	289, 485
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	278, 461
BstDEI	CTNAG	4 cut(s)	474, 558, 624, 648
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	163, 425
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 601
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	8 cut(s)	108, 117, 236, 545, 572, 575, 581, 584
BstNI	CCWGG	2 cut(s)	485, 515
BstSCI	CCNGG	2 cut(s)	483, 513
BstSFI	CTRYAG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	9 cut(s)	42, 123, 202, 446, 505, 508, 556, 562, 578
BstZI	CGGCCG	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	239, 269, 584
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	163, 425
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 341
Cac8I	GCNNGC	2 cut(s)	278, 461
CaiI	CAGNNNCTG	2 cut(s)	36, 117
CfoI	GCGC	2 cut(s)	35, 601
Cfr13I	GGNCC	3 cut(s)	267, 268, 628
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	5 cut(s)	154, 289, 384, 401, 506
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	4 cut(s)	474, 558, 624, 648
EaeI	YGGCCR	1 cut(s)	237
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	289, 485
EarI	CTCTTC	2 cut(s)	289, 485
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	153, 591
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	628
Eco52I	CGGCCG	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	373, 570
Eco81I	CCTNAGG	1 cut(s)	648
EcoO109I	RGGNCCY	2 cut(s)	267, 268
EcoRII	CCWGG	2 cut(s)	483, 513
EcoT14I	CCWWGG	2 cut(s)	153, 591
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	153, 591
FaeI	CATG	5 cut(s)	157, 292, 387, 404, 509
FaiI	YATR	8 cut(s)	54, 93, 155, 290, 385, 402, 432, 507
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	2 cut(s)	55, 396
FatI	CATG	5 cut(s)	153, 288, 383, 400, 505
FokI	GGATG	2 cut(s)	170, 412
FriOI	GRGCYC	1 cut(s)	271
GlaI	GCGC	2 cut(s)	34, 600
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	3 cut(s)	365, 497, 506
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	239, 269, 584
HhaI	GCGC	2 cut(s)	35, 601
Hin1II	CATG	5 cut(s)	157, 292, 387, 404, 509
Hin6I	GCGC	2 cut(s)	33, 599
HinP1I	GCGC	2 cut(s)	33, 599
HinfI	GANTC	6 cut(s)	162, 203, 447, 614, 620, 653
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	619
Hpy188III	TCNNGA	3 cut(s)	20, 133, 440
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	2 cut(s)	71, 343
HpyCH4III	ACNGT	2 cut(s)	49, 334
HpyCH4V	TGCA	8 cut(s)	30, 111, 120, 174, 317, 434, 459, 524
HpyF10VI	GCNNNNNNNGC	8 cut(s)	108, 117, 236, 545, 572, 575, 581, 584
HpyF3I	CTNAG	4 cut(s)	474, 558, 624, 648
Hsp92II	CATG	5 cut(s)	157, 292, 387, 404, 509
HspAI	GCGC	2 cut(s)	33, 599
LguI	GCTCTTC	1 cut(s)	485
Lsp1109I	GCAGC	9 cut(s)	42, 123, 202, 446, 505, 508, 556, 562, 578
LweI	GCATC	1 cut(s)	472
MaeIII	GTNAC	3 cut(s)	55, 352, 371
MboII	GAAGA	2 cut(s)	276, 472
MhlI	GDGCHC	3 cut(s)	143, 271, 400
MluCI	AATT	2 cut(s)	211, 223
MlyI	GAGTC	2 cut(s)	171, 456
MseI	TTAA	1 cut(s)	658
MspA1I	CMGCKG	2 cut(s)	569, 575
MspR9I	CCNGG	2 cut(s)	485, 515
MvaI	CCWGG	2 cut(s)	485, 515
MwoI	GCNNNNNNNGC	8 cut(s)	108, 117, 236, 545, 572, 575, 581, 584
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	5 cut(s)	157, 292, 387, 404, 509
NlaIV	GGNNCC	3 cut(s)	269, 270, 301
NmeAIII	GCCGAG	2 cut(s)	265, 604
NmuCI	GTSAC	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	485
PfeI	GAWTC	4 cut(s)	203, 614, 620, 653
PfoI	TCCNGGA	1 cut(s)	483
PleI	GAGTC	2 cut(s)	170, 455
PpsI	GAGTC	2 cut(s)	170, 455
Psp6I	CCWGG	2 cut(s)	483, 513
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	483, 513
PspN4I	GGNNCC	3 cut(s)	269, 270, 301
PspOMI	GGGCCC	1 cut(s)	267
PspPI	GGNCC	3 cut(s)	267, 268, 628
PstNI	CAGNNNCTG	2 cut(s)	36, 117
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	658
Sau96I	GGNCC	3 cut(s)	267, 268, 628
SchI	GAGTC	2 cut(s)	171, 456
ScrFI	CCNGG	2 cut(s)	485, 515
SduI	GDGCHC	3 cut(s)	143, 271, 400
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	628
Sse9I	AATT	2 cut(s)	211, 223
SsiI	CCGC	2 cut(s)	573, 585
StyD4I	CCNGG	2 cut(s)	483, 513
StyI	CCWWGG	2 cut(s)	153, 591
TaaI	ACNGT	2 cut(s)	49, 334
TaqI	TCGA	2 cut(s)	134, 186
TasI	AATT	2 cut(s)	211, 223
TauI	GCSGC	2 cut(s)	575, 587
TfiI	GAWTC	4 cut(s)	203, 614, 620, 653
Tru1I	TTAA	1 cut(s)	658
Tru9I	TTAA	1 cut(s)	658
TscAI	CASTG	2 cut(s)	122, 348
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	9 cut(s)	30, 111, 190, 434, 518, 521, 566, 569, 575
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	122, 348
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	2 cut(s)	211, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.