Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004632.1

Orthogroup ID

OG0010163

Physical Location & Seq

Genomic Coordinates Forward (+)

41991 .. 43212

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004632.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggatggaatcctctattgcaaacctcattttgagcagcttttcaaggaatctgggaatttcagcaagaattttgcaaagtccgctgagaagcagagtgaagtgctgaatagggcacccagcaaactctcttccatgttctctggaacccaagacaagtgtgcaacttgctcaaagacggtctatccactggagaaggtgacactggagggagaatgttaccacaagacatgcttcaggtgtgctcatgggggctgtccccttacacattcatcatatgctgctcttgatggaatcctttactgcaagcaccatttcgctcagctcttcatggagaaaggaaattacagccatgtcctccaggctgctaagaaaaatgccacacaatctaaagaaccatctgctgaagagcccgaagcccctccagccgcagaaccagagccagaaccagaacaacctaaggaccagagtgaccagtcagaagcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

162

Amino Acids

17.94

Weight (kDa)

5.97

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01780 AT2G45800 AT2G45800
fragaria_vesca	FvH4_7g13840 FvH4_7g13840
malus_domestica	MD01G1054500.v1.1 MD07G1140900.v1.1
prunus_persica	Prupe.2G164200_v2.0.a1 Prupe.2G164200_v2.0.a1
pyrus_communis	pycom01g07970
rosa_chinensis	RchiOBHm_Chr1g0354051
rosa_laevigata	RLG00000028231
rosa_multiflora	Rmu_sc0004632.1_g000005 Rmu_sc0006777.1_g000007
rosa_roxburghii	Rroxscaffold_4G00301270
rosa_rugosa	Rorug01G0240600
rosa_samantha	Rh1AG251700 Rh1BG223500 Rh1CG236100 Rh1DG250400
rosa_wichuraiana	Rw1G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AciI	CCGC	2 cut(s)	84, 429
AcsI	RAATTY	2 cut(s)	58, 70
AcuI	CTGAAG	2 cut(s)	220, 426
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	2 cut(s)	40, 325
AluI	AGCT	2 cut(s)	40, 325
Alw21I	GWGCWC	1 cut(s)	247
ApeKI	GCWGC	3 cut(s)	37, 281, 365
ApoI	RAATTY	2 cut(s)	58, 70
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	463
AxyI	CCTNAGG	1 cut(s)	459
BaeGI	GKGCMC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	49, 268, 352
BccI	CCATC	2 cut(s)	284, 406
BciT130I	CCWGG	1 cut(s)	362
BisI	GCNGC	4 cut(s)	38, 282, 366, 429
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	4 cut(s)	39, 283, 367, 430
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	2 cut(s)	117, 148
BmrFI	CCNGG	1 cut(s)	362
BpmI	CTGGAG	4 cut(s)	212, 227, 344, 408
Bpu1102I	GCTNAGC	1 cut(s)	321
Bse1I	ACTGG	3 cut(s)	195, 210, 475
Bse21I	CCTNAGG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	2 cut(s)	78, 335
BseNI	ACTGG	3 cut(s)	195, 210, 475
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	49, 268, 352
BseYI	CCCAGC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	243
Bsp1286I	GDGCHC	3 cut(s)	118, 247, 414
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	2 cut(s)	84, 429
BspCNI	CTCAG	2 cut(s)	79, 334
BspLI	GGNNCC	2 cut(s)	117, 148
BspQI	GCTCTTC	2 cut(s)	332, 402
BspT107I	GGYRCC	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	195, 210, 475
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	3 cut(s)	136, 332, 402
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	4 cut(s)	87, 321, 369, 459
BstF5I	GGATG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 425
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	49, 268, 352
Bsu36I	CCTNAGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	188, 203
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	463
CviAII	CATG	5 cut(s)	136, 231, 248, 331, 353
CviJI	RGCY	9 cut(s)	40, 255, 325, 351, 365, 412, 419, 428, 442
CviKI_1	RGCY	9 cut(s)	40, 255, 325, 351, 365, 412, 419, 428, 442
DdeI	CTNAG	4 cut(s)	87, 321, 369, 459
Eam1104I	CTCTTC	3 cut(s)	136, 332, 402
EarI	CTCTTC	3 cut(s)	136, 332, 402
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	2 cut(s)	220, 426
Eco81I	CCTNAGG	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	5 cut(s)	139, 234, 251, 334, 356
FaiI	YATR	7 cut(s)	137, 232, 249, 277, 279, 332, 354
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	5 cut(s)	135, 230, 247, 330, 352
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	38, 282, 366, 429
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	4 cut(s)	38, 282, 366, 429
GluI	GCNGC	4 cut(s)	38, 282, 366, 429
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	4 cut(s)	212, 227, 344, 408
Hin1II	CATG	5 cut(s)	139, 234, 251, 334, 356
HinfI	GANTC	3 cut(s)	9, 50, 294
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	2 cut(s)	144, 287
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	21, 77, 164, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 425
HpyF3I	CTNAG	4 cut(s)	87, 321, 369, 459
Hsp92II	CATG	5 cut(s)	139, 234, 251, 334, 356
LguI	GCTCTTC	2 cut(s)	332, 402
Lsp1109I	GCAGC	3 cut(s)	49, 268, 352
MaeIII	GTNAC	3 cut(s)	199, 218, 470
MboII	GAAGA	3 cut(s)	123, 319, 419
MhlI	GDGCHC	3 cut(s)	118, 247, 414
MluCI	AATT	3 cut(s)	58, 70, 343
MnlI	CCTC	5 cut(s)	23, 36, 202, 368, 432
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	83, 425
NdeI	CATATG	1 cut(s)	277
NlaIII	CATG	5 cut(s)	139, 234, 251, 334, 356
NlaIV	GGNNCC	2 cut(s)	117, 148
NmuCI	GTSAC	2 cut(s)	199, 470
NspI	RCATGY	1 cut(s)	234
PciSI	GCTCTTC	2 cut(s)	332, 402
PfeI	GAWTC	3 cut(s)	9, 50, 294
PkrI	GCNGC	4 cut(s)	39, 283, 367, 430
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	117, 148
PspPI	GGNCC	1 cut(s)	463
SapI	GCTCTTC	2 cut(s)	332, 402
SatI	GCNGC	4 cut(s)	38, 282, 366, 429
Sau96I	GGNCC	1 cut(s)	463
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	3 cut(s)	118, 247, 414
SetI	ASST	6 cut(s)	28, 42, 201, 242, 327, 460
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	3 cut(s)	58, 70, 343
SsiI	CCGC	2 cut(s)	84, 429
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	181
TasI	AATT	3 cut(s)	58, 70, 343
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	3 cut(s)	9, 50, 294
TscAI	CASTG	2 cut(s)	195, 210
TseFI	GTSAC	2 cut(s)	199, 470
TseI	GCWGC	3 cut(s)	37, 281, 365
Tsp45I	GTSAC	2 cut(s)	199, 470
TspDTI	ATGAA	2 cut(s)	261, 319
TspRI	CASTG	2 cut(s)	195, 210
VpaK11BI	GGWCC	1 cut(s)	463
XapI	RAATTY	2 cut(s)	58, 70
XceI	RCATGY	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.