Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010163

Physical Location & Seq

Genomic Coordinates Forward (+)

49374036 .. 49376328

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG236100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGCACCTATTCCTCCATGGATGGAATCCTCTATTGCAAACCTCATTTTGAGCAGCTTTTCAAGGAATCTGGGAATTTCAGCAAGAATTTTGCAAAGTCCGCTGAGAAGCAGAGTGAAGTGCTGAATAGGGCACCCAGCAAACTCTCTTCCATGTTCTCTGGAACCCAAGACAAGTGTGCAACTTGCTCAAAGACAGTCTATCCACTGGAGAAGGTGACACTGGAGGGAGAAAGTTACCACAAGACATGCTTCAGGTGTGCTCATGGGGGCTGTCCCCTTACACATTCATCATATGCTGCTCTTGATGGAATCCTTTACTGCAAGCACCATTTCGCTCAGCTCTTCATGGAGAAAGGAAATTACAGCCATGTCCTCCAGGCTGCTAAGAAAAATGCCACACAATCTAAAGAACCATCTGCTGAAGAGCCCGAAGCCCCTCCAGCCGCAGAACCAGAGCCAGAACCAGAACAACCAAAGGACCAGAGTGACCAGTCAGAAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

168

Amino Acids

18.58

Weight (kDa)

5.97

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	60 - 116	4.9e-12	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01780 AT2G45800 AT2G45800
fragaria_vesca	FvH4_7g13840 FvH4_7g13840
malus_domestica	MD01G1054500.v1.1 MD07G1140900.v1.1
prunus_persica	Prupe.2G164200_v2.0.a1 Prupe.2G164200_v2.0.a1
pyrus_communis	pycom01g07970
rosa_chinensis	RchiOBHm_Chr1g0354051
rosa_laevigata	RLG00000028231
rosa_multiflora	Rmu_sc0004632.1_g000005 Rmu_sc0006777.1_g000007
rosa_roxburghii	Rroxscaffold_4G00301270
rosa_rugosa	Rorug01G0240600
rosa_samantha	Rh1AG251700 Rh1BG223500 Rh1CG236100 Rh1DG250400
rosa_wichuraiana	Rw1G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AciI	CCGC	2 cut(s)	102, 447
AcsI	RAATTY	2 cut(s)	76, 88
AcuI	CTGAAG	2 cut(s)	238, 444
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	58, 343
AluI	AGCT	2 cut(s)	58, 343
Alw21I	GWGCWC	2 cut(s)	8, 265
ApeKI	GCWGC	3 cut(s)	55, 299, 383
ApoI	RAATTY	2 cut(s)	76, 88
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	481
BaeGI	GKGCMC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	8, 265
BbvI	GCAGC	3 cut(s)	67, 286, 370
BccI	CCATC	3 cut(s)	17, 302, 424
BciT130I	CCWGG	1 cut(s)	380
BisI	GCNGC	4 cut(s)	56, 300, 384, 447
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	4 cut(s)	57, 301, 385, 448
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	135, 166
BmrFI	CCNGG	1 cut(s)	380
BpmI	CTGGAG	4 cut(s)	230, 245, 362, 426
Bpu1102I	GCTNAGC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	18
Bse1I	ACTGG	3 cut(s)	213, 228, 493
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	96, 353
BseNI	ACTGG	3 cut(s)	213, 228, 493
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	67, 286, 370
BseYI	CCCAGC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	8, 265
BslFI	GGGAC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	261
Bsp1286I	GDGCHC	4 cut(s)	8, 136, 265, 432
Bsp1720I	GCTNAGC	1 cut(s)	339
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	102, 447
BspCNI	CTCAG	2 cut(s)	97, 352
BspLI	GGNNCC	2 cut(s)	135, 166
BspQI	GCTCTTC	2 cut(s)	350, 420
BspT107I	GGYRCC	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	213, 228, 493
BssECI	CCNNGG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	3 cut(s)	154, 350, 420
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	105, 339, 387
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 443
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	3 cut(s)	67, 286, 370
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	206, 221
Cac8I	GCNNGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	481
CviAII	CATG	6 cut(s)	19, 154, 249, 266, 349, 371
CviJI	RGCY	9 cut(s)	58, 273, 343, 369, 383, 430, 437, 446, 460
CviKI_1	RGCY	9 cut(s)	58, 273, 343, 369, 383, 430, 437, 446, 460
DdeI	CTNAG	3 cut(s)	105, 339, 387
Eam1104I	CTCTTC	3 cut(s)	154, 350, 420
EarI	CTCTTC	3 cut(s)	154, 350, 420
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	238, 444
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	6 cut(s)	22, 157, 252, 269, 352, 374
FaiI	YATR	8 cut(s)	20, 155, 250, 267, 295, 297, 350, 372
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	6 cut(s)	18, 153, 248, 265, 348, 370
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	4 cut(s)	56, 300, 384, 447
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	4 cut(s)	56, 300, 384, 447
GluI	GCNGC	4 cut(s)	56, 300, 384, 447
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	4 cut(s)	230, 245, 362, 426
Hin1II	CATG	6 cut(s)	22, 157, 252, 269, 352, 374
HinfI	GANTC	3 cut(s)	27, 68, 312
HphI	GGTGA	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	2 cut(s)	162, 305
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	39, 95, 182, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 443
HpyF3I	CTNAG	3 cut(s)	105, 339, 387
Hsp92II	CATG	6 cut(s)	22, 157, 252, 269, 352, 374
LguI	GCTCTTC	2 cut(s)	350, 420
Lsp1109I	GCAGC	3 cut(s)	67, 286, 370
MaeIII	GTNAC	3 cut(s)	217, 236, 488
MboII	GAAGA	3 cut(s)	141, 337, 437
MhlI	GDGCHC	4 cut(s)	8, 136, 265, 432
MluCI	AATT	3 cut(s)	76, 88, 361
MnlI	CCTC	6 cut(s)	25, 41, 54, 220, 386, 450
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	101, 443
NcoI	CCATGG	1 cut(s)	18
NdeI	CATATG	1 cut(s)	295
NlaIII	CATG	6 cut(s)	22, 157, 252, 269, 352, 374
NlaIV	GGNNCC	2 cut(s)	135, 166
NmuCI	GTSAC	2 cut(s)	217, 488
NspI	RCATGY	1 cut(s)	252
PciSI	GCTCTTC	2 cut(s)	350, 420
PfeI	GAWTC	3 cut(s)	27, 68, 312
PkrI	GCNGC	4 cut(s)	57, 301, 385, 448
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	135, 166
PspPI	GGNCC	1 cut(s)	481
SapI	GCTCTTC	2 cut(s)	350, 420
SatI	GCNGC	4 cut(s)	56, 300, 384, 447
Sau96I	GGNCC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	4 cut(s)	8, 136, 265, 432
SetI	ASST	6 cut(s)	11, 46, 60, 219, 260, 345
SinI	GGWCC	1 cut(s)	481
Sse9I	AATT	3 cut(s)	76, 88, 361
SsiI	CCGC	2 cut(s)	102, 447
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	3 cut(s)	76, 88, 361
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	3 cut(s)	27, 68, 312
TscAI	CASTG	2 cut(s)	213, 228
TseFI	GTSAC	2 cut(s)	217, 488
TseI	GCWGC	3 cut(s)	55, 299, 383
Tsp45I	GTSAC	2 cut(s)	217, 488
TspDTI	ATGAA	2 cut(s)	279, 337
TspRI	CASTG	2 cut(s)	213, 228
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	2 cut(s)	76, 88
XceI	RCATGY	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.