Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010163

Physical Location & Seq

Genomic Coordinates Forward (+)

34577665 .. 34579957

Gene Structure 2293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAGCAACCTTCACTTACACTCTTCCATTTCCAAAACAATCTTGGCCCTGCGAATCTCTTCCCTTTTCTTTCTCTTTTCTTCACTCAATATCACCCATGGCTCCCCAATCAAAGCTAACATCTTCATCTATGCAGGCTGCTCACAAGAAAAGTACCAACCAAACTCACCCTTTGAAGCTAACCTCAACTCTTTCCTAACCTCAGTTGTTAGCTCATCCTCTCAAGCCTCTTACAACGCCTTTTCTATCGGAAACGGAACCTCAACATCACCAGAAGGTGCCATTTATGGCTTGTACCAGTGCAGAGGTGACTTAAGGATTTTTGACTGTTTGAAATGCATCGAAAGCGCTGTCAATCAAATCACTCTAGTCTGTCCCTACTCTTATGGCGCCTCTTTGCAGTTACAAGGTTGTTATGTTAGATACGAGCATGCTGAGTTTTTGGGCAAGCTTGATACAAGTTTGAGGTACAAGAAATGTAGTAAGAGTGTACATGAAGATGTTGAGTTCTTTCGGAGAAGAGATGACGTGCTAGCTGACTTGCAAGGGACTAGTGGATTTAGGGTTAGTAGTTCAGGCTTGGTTGAGGGTTTTGCTCAGTGTTTTGGGGATTTGAGCCAAAACGACTGCTCTTCTTGCGTCGCAGATGCCGTGGGAAAGCTGAAGAGTTTGTGTGGGTCAGCAGCTGCGGTAGATGTGTTTTTGGCTCAGTGTTATGCTAGGTACTGGGCTTCTGGCTACTACGATATCTCAGATTCCTCTAACGAAGACCAAGTGGGAAAGACTGTGGCCATTATCGTGGGGGTGGTAGCAAGTCTAGCTATTCTCATTGTTCTTCTATCAGTTTGCCGGAAAACCATGGGTCGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

290

Amino Acids

31.53

Weight (kDa)

6.91

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	47 - 144	5.2e-20	Salt stress response/antifungal
Stress-antifung	PF01657	160 - 242	1e-10	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01780 AT2G45800 AT2G45800
fragaria_vesca	FvH4_7g13840 FvH4_7g13840
malus_domestica	MD01G1054500.v1.1 MD07G1140900.v1.1
prunus_persica	Prupe.2G164200_v2.0.a1 Prupe.2G164200_v2.0.a1
pyrus_communis	pycom01g07970
rosa_chinensis	RchiOBHm_Chr1g0354051
rosa_laevigata	RLG00000028231
rosa_multiflora	Rmu_sc0004632.1_g000005 Rmu_sc0006777.1_g000007
rosa_roxburghii	Rroxscaffold_4G00301270
rosa_rugosa	Rorug01G0240600
rosa_samantha	Rh1AG251700 Rh1BG223500 Rh1CG236100 Rh1DG250400
rosa_wichuraiana	Rw1G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	278, 389
AciI	CCGC	1 cut(s)	689
AcoI	YGGCCR	1 cut(s)	789
AcuI	CTGAAG	1 cut(s)	683
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	5 cut(s)	155, 296, 470, 492, 725
AfeI	AGCGCT	1 cut(s)	349
AflII	CTTAAG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	176, 334
AhlI	ACTAGT	1 cut(s)	551
AjiI	CACGTC	1 cut(s)	529
AluBI	AGCT	8 cut(s)	116, 179, 213, 451, 536, 661, 686, 821
AluI	AGCT	8 cut(s)	116, 179, 213, 451, 536, 661, 686, 821
AlwNI	CAGNNNCTG	1 cut(s)	686
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	2 cut(s)	45, 789
ApeKI	GCWGC	3 cut(s)	138, 683, 686
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	350, 392
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	4 cut(s)	85, 159, 261, 320
AsuNHI	GCTAGC	1 cut(s)	532
BalI	TGGCCA	1 cut(s)	791
BanI	GGYRCC	2 cut(s)	278, 389
BbsI	GAAGAC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	125, 673, 695
BceAI	ACGGC	1 cut(s)	635
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	5 cut(s)	368, 533, 552, 720, 818
BfoI	RGCGCY	2 cut(s)	351, 393
BfrI	CTTAAG	1 cut(s)	313
BisI	GCNGC	3 cut(s)	139, 684, 687
BlsI	GCNGC	3 cut(s)	140, 685, 688
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	4 cut(s)	103, 259, 280, 391
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	2 cut(s)	348, 637
BmtI	GCTAGC	1 cut(s)	536
BmuI	ACTGGG	1 cut(s)	736
BpiI	GAAGAC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	97, 651, 858
Bse1I	ACTGG	2 cut(s)	298, 731
BseDI	CCNNGG	3 cut(s)	97, 651, 858
BseGI	GGATG	1 cut(s)	215
BseMII	CTCAG	5 cut(s)	216, 426, 611, 722, 765
BseNI	ACTGG	2 cut(s)	298, 731
BseXI	GCAGC	3 cut(s)	125, 673, 695
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	47, 791
BshNI	GGYRCC	2 cut(s)	278, 389
BsiSI	CCGG	1 cut(s)	850
BslFI	GGGAC	2 cut(s)	360, 562
BsmFI	GGGAC	2 cut(s)	360, 562
BsnI	GGCC	2 cut(s)	47, 791
Bsp1407I	TGTACA	1 cut(s)	490
Bsp19I	CCATGG	2 cut(s)	97, 858
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	2 cut(s)	47, 791
BspCNI	CTCAG	5 cut(s)	215, 427, 610, 721, 764
BspLI	GGNNCC	4 cut(s)	103, 259, 280, 391
BspOI	GCTAGC	1 cut(s)	536
BspQI	GCTCTTC	1 cut(s)	637
BspT107I	GGYRCC	2 cut(s)	278, 389
BspTI	CTTAAG	1 cut(s)	313
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	298, 731
BssECI	CCNNGG	3 cut(s)	97, 651, 858
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	97, 858
Bst4CI	ACNGT	2 cut(s)	329, 787
Bst6I	CTCTTC	5 cut(s)	28, 64, 514, 637, 659
BstACI	GRCGYC	1 cut(s)	390
BstAFI	CTTAAG	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	490
BstC8I	GCNNGC	4 cut(s)	136, 432, 449, 534
BstDEI	CTNAG	5 cut(s)	202, 435, 597, 708, 751
BstDSI	CCRYGG	3 cut(s)	97, 651, 858
BstF5I	GGATG	1 cut(s)	215
BstH2I	RGCGCY	2 cut(s)	351, 393
BstHHI	GCGC	2 cut(s)	350, 392
BstMWI	GCNNNNNNNGC	3 cut(s)	345, 636, 818
BstNSI	RCATGY	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	125, 673, 695
BstV2I	GAAGAC	1 cut(s)	774
BstXI	CCANNNNNNTGG	1 cut(s)	799
BsuRI	GGCC	2 cut(s)	47, 791
BtgI	CCRYGG	3 cut(s)	97, 651, 858
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	215
BtsIMutI	CAGTG	3 cut(s)	305, 605, 716
Cac8I	GCNNGC	4 cut(s)	136, 432, 449, 534
CaiI	CAGNNNCTG	1 cut(s)	686
CfoI	GCGC	2 cut(s)	350, 392
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	5 cut(s)	154, 295, 469, 491, 724
CviAII	CATG	4 cut(s)	98, 431, 494, 859
CviQI	GTAC	5 cut(s)	154, 295, 469, 491, 724
DdeI	CTNAG	5 cut(s)	202, 435, 597, 708, 751
DinI	GGCGCC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	789
Eam1104I	CTCTTC	5 cut(s)	28, 64, 514, 637, 659
EarI	CTCTTC	5 cut(s)	28, 64, 514, 637, 659
Eco130I	CCWWGG	2 cut(s)	97, 858
Eco32I	GATATC	1 cut(s)	748
Eco47III	AGCGCT	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	683
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	2 cut(s)	97, 858
EcoT22I	ATGCAT	1 cut(s)	341
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
ErhI	CCWWGG	2 cut(s)	97, 858
FaeI	CATG	4 cut(s)	101, 434, 497, 862
FaiI	YATR	9 cut(s)	99, 132, 288, 387, 417, 432, 495, 717, 860
FaqI	GGGAC	2 cut(s)	360, 562
FatI	CATG	4 cut(s)	97, 430, 493, 858
Fnu4HI	GCNGC	3 cut(s)	139, 684, 687
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	139, 684, 687
FspBI	CTAG	5 cut(s)	368, 533, 552, 720, 818
GlaI	GCGC	2 cut(s)	349, 391
GluI	GCNGC	3 cut(s)	139, 684, 687
HaeII	RGCGCY	2 cut(s)	351, 393
HaeIII	GGCC	2 cut(s)	47, 791
HapII	CCGG	1 cut(s)	850
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	2 cut(s)	350, 392
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	101, 434, 497, 862
Hin6I	GCGC	2 cut(s)	348, 390
HinP1I	GCGC	2 cut(s)	348, 390
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	2 cut(s)	54, 755
HpaII	CCGG	1 cut(s)	850
HphI	GGTGA	4 cut(s)	85, 159, 261, 320
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	3 cut(s)	251, 516, 754
Hpy8I	GTNNAC	1 cut(s)	491
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	2 cut(s)	20, 269
HpyCH4III	ACNGT	2 cut(s)	329, 787
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	5 cut(s)	134, 303, 339, 400, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	345, 636, 818
HpyF3I	CTNAG	5 cut(s)	202, 435, 597, 708, 751
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	4 cut(s)	101, 434, 497, 862
HspAI	GCGC	2 cut(s)	348, 390
KasI	GGCGCC	1 cut(s)	389
LguI	GCTCTTC	1 cut(s)	637
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	8 cut(s)	62, 120, 285, 311, 561, 712, 720, 863
Lsp1109I	GCAGC	3 cut(s)	125, 673, 695
LweI	GCATC	2 cut(s)	348, 637
MaeI	CTAG	5 cut(s)	368, 533, 552, 720, 818
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	308, 402
MlsI	TGGCCA	1 cut(s)	791
MluNI	TGGCCA	1 cut(s)	791
Mly113I	GGCGCC	1 cut(s)	390
Mox20I	TGGCCA	1 cut(s)	791
Mph1103I	ATGCAT	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	2 cut(s)	498, 797
Msp20I	TGGCCA	1 cut(s)	791
MspA1I	CMGCKG	1 cut(s)	686
MspCI	CTTAAG	1 cut(s)	313
MspI	CCGG	1 cut(s)	850
MwoI	GCNNNNNNNGC	3 cut(s)	345, 636, 818
NarI	GGCGCC	1 cut(s)	390
NcoI	CCATGG	2 cut(s)	97, 858
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	4 cut(s)	101, 434, 497, 862
NlaIV	GGNNCC	4 cut(s)	103, 259, 280, 391
NmuCI	GTSAC	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	341
NspI	RCATGY	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	1 cut(s)	648
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	54, 755
PkrI	GCNGC	3 cut(s)	140, 685, 688
PluTI	GGCGCC	1 cut(s)	393
PspN4I	GGNNCC	4 cut(s)	103, 259, 280, 391
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	686
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	5 cut(s)	155, 296, 470, 492, 725
RsaNI	GTAC	5 cut(s)	154, 295, 469, 491, 724
RseI	CAYNNNNRTG	2 cut(s)	498, 797
SapI	GCTCTTC	1 cut(s)	637
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	139, 684, 687
Sau96I	GGNCC	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	348, 637
SfoI	GGCGCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	498, 797
SmlI	CTYRAG	2 cut(s)	222, 313
SmoI	CTYRAG	2 cut(s)	222, 313
SpeI	ACTAGT	1 cut(s)	551
SphI	GCATGC	1 cut(s)	434
SsiI	CCGC	1 cut(s)	689
SspDI	GGCGCC	1 cut(s)	389
SspMI	CTAG	5 cut(s)	368, 533, 552, 720, 818
StyI	CCWWGG	2 cut(s)	97, 858
TaaI	ACNGT	2 cut(s)	329, 787
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	1 cut(s)	342
TatI	WGTACW	1 cut(s)	490
TfiI	GAWTC	2 cut(s)	54, 755
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	3 cut(s)	305, 605, 716
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	138, 683, 686
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	115, 510
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	3 cut(s)	305, 605, 716
Vha464I	CTTAAG	1 cut(s)	313
XceI	RCATGY	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	5 cut(s)	368, 533, 552, 720, 818
Zsp2I	ATGCAT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.