AT1G02050

Belongs to the chalcone stilbene synthases family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
359117 .. 360746
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02050.1

Sequence Viewer

Length: 1188 bp
ATGTCGAATTCTAGGATGAATGGTGTTGAGAAGCTAAGCAGCAAATCCACAAGGCGTGTCGCAAATGCCGGAAAGGCAACACTGCTTGCTCTTGGCAAAGCCTTCCCAAGCCAAGTCGTTCCTCAGGAGAATCTAGTGGAAGGATTTCTACGAGACACCAAATGTGATGACGCGTTTATCAAAGAAAAGCTGGAACACTTGTGCAAAACGACAACCGTGAAGACGCGATACACTGTGTTGACGCGAGAGATACTGGCTAAATACCCTGAGCTAACAACAGAGGGTTCACCAACAATCAAGCAAAGACTTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCATTGGAAGCCAGTTTAGGTTGCATCAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCACATTGTCTACGTTTCCTCAAGCGAGATCCGTTTACCCGGTGGTGACCTTTACCTCTCAGCAAAGCTAGGCCTGAGGAATGACGTGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGGTGTGACTGGCCTCCGTGTGGCCAAAGACATTGCTGAGAACAACCCCGGAAGCCGTGTTCTGCTCACAACCTCTGAAACCACCATTCTCGGATTTCGGCCACCAAACAAAGCGCGTCCGTACGACCTAGTTGGAGCTGCTCTGTTTGGAGATGGTGCAGCTGCTGTGATCATCGGAGCTGACCCGAGAGAGTGTGAAGCTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTCTTGCCGGGGACACAGAACGTGATCGAGGGGAGGTTGACTGAGGAAGGCATAAACTTCAAGCTTGGACGAGACCTCCCGCAGAAGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCTGATGGGAAAGGCTGGCGATGAGTCGATGGAGTTCAATGACATGTTCTGGGCTGTTCATCCAGGAGGACCTGCGATTCTGAACCGTCTGGAGACAAAACTGAAGCTGGAGAAAGAGAAGCTGGAGAGCAGCAGAAGGGCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTGTATGTGATGGAGTATATGAGAGATGAGCTGAAGAAGAAAGGTGACGCAGCACAAGAGTGGGGACTTGGCTTAGCTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCATCCGCAGCCTCACCTCTTCCTAA

Protein Analysis

395

Amino Acids

43.62

Weight (kDa)

6.01

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 14 - 236 4e-115 Chalcone and stilbene synthases, N-terminal domain
ACP_syn_III PF08545 171 - 247 3.3e-06 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Chal_sti_synt_C PF02797 245 - 392 3.5e-71 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012948)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 955
AccI GTMKAC 1 cut(s) 408
AccII CGCG 4 cut(s) 173, 226, 244, 637
AciI CCGC 4 cut(s) 326, 746, 836, 1168
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 2 cut(s) 543, 620
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 2 cut(s) 998, 1106
AfaI GTAC 1 cut(s) 644
AfiI CCNNNNNNNGG 1 cut(s) 541
AflIII ACRYGT 2 cut(s) 171, 918
AgsI TTSAA 3 cut(s) 311, 817, 913
AjiI CACGTC 1 cut(s) 484
AjnI CCWGG 2 cut(s) 937, 1138
AleI CACNNNNGTG 1 cut(s) 1111
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
Alw26I GTCTC 3 cut(s) 147, 822, 962
AlwI GGATC 1 cut(s) 421
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 706
AoxI GGCC 6 cut(s) 380, 469, 532, 543, 620, 1156
ApeKI GCWGC 9 cut(s) 39, 659, 680, 683, 736, 1005, 1041, 1103, 1170
ApoI RAATTY 1 cut(s) 7
Asp700I GAANNNNTTC 2 cut(s) 144, 1158
AspLEI GCGC 1 cut(s) 637
AspS9I GGNCC 2 cut(s) 944, 1136
AsuC2I CCSGG 3 cut(s) 438, 570, 765
AsuHPI GGTGA 5 cut(s) 279, 455, 1109, 1138, 1168
AsuII TTCGAA 1 cut(s) 1152
AvaI CYCGRG 1 cut(s) 706
AvaII GGWCC 2 cut(s) 944, 1136
AxyI CCTNAGG 2 cut(s) 123, 473
BalI TGGCCA 1 cut(s) 545
BarI GAAGNNNNNNTAC 4 cut(s) 132, 164, 212, 244
BbsI GAAGAC 2 cut(s) 227, 396
BbvI GCAGC 9 cut(s) 51, 646, 670, 692, 723, 1017, 1053, 1115, 1182
BccI CCATC 4 cut(s) 668, 874, 898, 1057
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 2 cut(s) 939, 1140
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 3 cut(s) 438, 570, 765
BcoDI GTCTC 3 cut(s) 147, 822, 962
BfaI CTAG 4 cut(s) 12, 134, 467, 650
BfuAI ACCTGC 1 cut(s) 955
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 9 cut(s) 40, 660, 681, 684, 737, 1006, 1042, 1104, 1171
BlpI GCTNAGC 2 cut(s) 35, 1126
BlsI GCNGC 9 cut(s) 41, 661, 682, 685, 738, 1007, 1043, 1105, 1172
Bme1390I CCNGG 5 cut(s) 438, 570, 765, 939, 1140
Bme18I GGWCC 2 cut(s) 944, 1136
BmeT110I CYCGRG 1 cut(s) 706
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 944, 1136
BmrFI CCNGG 5 cut(s) 438, 570, 765, 939, 1140
BmsI GCATC 3 cut(s) 372, 486, 503
BpiI GAAGAC 2 cut(s) 227, 396
BpmI CTGGAG 3 cut(s) 986, 1004, 1019
Bpu10I CCTNAGC 1 cut(s) 267
Bpu1102I GCTNAGC 2 cut(s) 35, 1126
Bpu14I TTCGAA 1 cut(s) 1152
BpuEI CTTGAG 1 cut(s) 403
BpuMI CCSGG 3 cut(s) 438, 570, 765
BsaI GGTCTC 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 568, 764
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse1I ACTGG 4 cut(s) 258, 351, 383, 535
Bse21I CCTNAGG 2 cut(s) 123, 473
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 2 cut(s) 939, 1140
BseDI CCNNGG 2 cut(s) 568, 764
BseGI GGATG 4 cut(s) 21, 518, 934, 1164
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 6 cut(s) 137, 258, 464, 471, 549, 789
BseNI ACTGG 4 cut(s) 258, 351, 383, 535
BseRI GAGGAG 1 cut(s) 863
BseXI GCAGC 9 cut(s) 51, 646, 670, 692, 723, 1017, 1053, 1115, 1182
BsgI GTGCAG 2 cut(s) 699, 722
Bsh1236I CGCG 4 cut(s) 173, 226, 244, 637
BshFI GGCC 6 cut(s) 382, 471, 534, 545, 622, 1158
BsiHKCI CYCGRG 1 cut(s) 706
BsiSI CCGG 4 cut(s) 69, 438, 570, 764
BsiWI CGTACG 1 cut(s) 642
BslFI GGGAC 2 cut(s) 781, 1131
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 3 cut(s) 147, 822, 962
BsmFI GGGAC 2 cut(s) 781, 1131
BsnI GGCC 6 cut(s) 382, 471, 534, 545, 622, 1158
Bso31I GGTCTC 1 cut(s) 822
BsoBI CYCGRG 1 cut(s) 706
Bsp119I TTCGAA 1 cut(s) 1152
Bsp143I GATC 3 cut(s) 426, 690, 780
Bsp1720I GCTNAGC 2 cut(s) 35, 1126
BspACI CCGC 4 cut(s) 326, 746, 836, 1168
BspANI GGCC 6 cut(s) 382, 471, 534, 545, 622, 1158
BspCNI CTCAG 6 cut(s) 136, 259, 465, 470, 550, 790
BspFNI CGCG 4 cut(s) 173, 226, 244, 637
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 1 cut(s) 421
BspT104I TTCGAA 1 cut(s) 1152
BspTNI GGTCTC 1 cut(s) 822
BsrDI GCAATG 1 cut(s) 552
BsrI ACTGG 4 cut(s) 258, 351, 383, 535
BssECI CCNNGG 2 cut(s) 568, 764
BssMI GATC 3 cut(s) 426, 690, 780
Bst2UI CCWGG 2 cut(s) 939, 1140
Bst4CI ACNGT 4 cut(s) 217, 235, 962, 1056
Bst6I CTCTTC 1 cut(s) 855
BstAPI GCANNNNNTGC 1 cut(s) 760
BstBI TTCGAA 1 cut(s) 1152
BstC8I GCNNGC 2 cut(s) 87, 892
BstDEI CTNAG 8 cut(s) 35, 123, 267, 457, 473, 558, 798, 1126
BstEII GGTNACC 1 cut(s) 443
BstF5I GGATG 4 cut(s) 21, 518, 934, 1164
BstFNI CGCG 4 cut(s) 173, 226, 244, 637
BstHHI GCGC 1 cut(s) 637
BstKTI GATC 3 cut(s) 429, 693, 783
BstMAI GTCTC 3 cut(s) 147, 822, 962
BstMBI GATC 3 cut(s) 426, 690, 780
BstMWI GCNNNNNNNGC 4 cut(s) 74, 323, 347, 760
BstNI CCWGG 2 cut(s) 939, 1140
BstNSI RCATGY 1 cut(s) 922
BstPI GGTNACC 1 cut(s) 443
BstSCI CCNGG 5 cut(s) 436, 568, 763, 937, 1138
BstUI CGCG 4 cut(s) 173, 226, 244, 637
BstV1I GCAGC 9 cut(s) 51, 646, 670, 692, 723, 1017, 1053, 1115, 1182
BstV2I GAAGAC 2 cut(s) 227, 396
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
Bsu36I CCTNAGG 2 cut(s) 123, 473
BsuRI GGCC 6 cut(s) 382, 471, 534, 545, 622, 1158
BtgZI GCGATG 1 cut(s) 909
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 4 cut(s) 21, 518, 934, 1164
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 80, 231, 390
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 2 cut(s) 87, 892
CaiI CAGNNNCTG 1 cut(s) 686
CfoI GCGC 1 cut(s) 637
Cfr13I GGNCC 2 cut(s) 944, 1136
CseI GACGC 5 cut(s) 179, 232, 250, 626, 1109
Csp6I GTAC 1 cut(s) 643
CviAII CATG 2 cut(s) 730, 919
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 8 cut(s) 35, 123, 267, 457, 473, 558, 798, 1126
DpnI GATC 3 cut(s) 428, 692, 782
DpnII GATC 3 cut(s) 426, 690, 780
EaeI YGGCCR 2 cut(s) 543, 620
Eam1104I CTCTTC 1 cut(s) 855
EarI CTCTTC 1 cut(s) 855
Eco147I AGGCCT 2 cut(s) 471, 1158
Eco31I GGTCTC 1 cut(s) 822
Eco47I GGWCC 2 cut(s) 944, 1136
Eco57I CTGAAG 2 cut(s) 998, 1106
Eco81I CCTNAGG 2 cut(s) 123, 473
Eco88I CYCGRG 1 cut(s) 706
Eco91I GGTNACC 1 cut(s) 443
EcoO109I RGGNCCY 1 cut(s) 944
EcoO65I GGTNACC 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 937, 1138
FaeI CATG 2 cut(s) 733, 922
FaiI YATR 8 cut(s) 731, 744, 809, 857, 920, 1059, 1071, 1073
FaqI GGGAC 2 cut(s) 781, 1131
FatI CATG 2 cut(s) 729, 918
FauI CCCGC 1 cut(s) 843
FbaI TGATCA 1 cut(s) 690
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 9 cut(s) 40, 660, 681, 684, 737, 1006, 1042, 1104, 1171
FokI GGATG 4 cut(s) 28, 525, 921, 1151
Fsp4HI GCNGC 9 cut(s) 40, 660, 681, 684, 737, 1006, 1042, 1104, 1171
FspBI CTAG 4 cut(s) 12, 134, 467, 650
GlaI GCGC 1 cut(s) 636
GluI GCNGC 9 cut(s) 40, 660, 681, 684, 737, 1006, 1042, 1104, 1171
GsuI CTGGAG 3 cut(s) 986, 1004, 1019
HaeIII GGCC 6 cut(s) 382, 471, 534, 545, 622, 1158
HapII CCGG 4 cut(s) 69, 438, 570, 764
HgaI GACGC 5 cut(s) 179, 232, 250, 626, 1109
HhaI GCGC 1 cut(s) 637
Hin1II CATG 2 cut(s) 733, 922
Hin6I GCGC 1 cut(s) 635
HinP1I GCGC 1 cut(s) 635
HincII GTYRAC 2 cut(s) 240, 795
HindII GTYRAC 2 cut(s) 240, 795
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 4 cut(s) 130, 899, 952, 1143
HpaII CCGG 4 cut(s) 69, 438, 570, 764
HphI GGTGA 5 cut(s) 279, 455, 1109, 1138, 1168
Hpy166II GTNNAC 6 cut(s) 240, 287, 409, 434, 487, 795
Hpy188I TCNGA 5 cut(s) 598, 614, 698, 957, 1136
Hpy188III TCNNGA 2 cut(s) 125, 965
Hpy8I GTNNAC 6 cut(s) 240, 287, 409, 434, 487, 795
HpyAV CCTTC 8 cut(s) 112, 134, 372, 797, 1005, 1148, 1159, 1169
HpyCH4III ACNGT 4 cut(s) 217, 235, 962, 1056
HpyCH4IV ACGT 4 cut(s) 411, 483, 777, 1035
HpyCH4V TGCA 6 cut(s) 204, 317, 363, 680, 739, 870
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 323, 347, 760
HpyF3I CTNAG 8 cut(s) 35, 123, 267, 457, 473, 558, 798, 1126
HpySE526I ACGT 4 cut(s) 411, 483, 777, 1035
Hsp92II CATG 2 cut(s) 733, 922
HspAI GCGC 1 cut(s) 635
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 3 cut(s) 426, 690, 780
LmnI GCTCC 4 cut(s) 656, 698, 727, 733
Lsp1109I GCAGC 9 cut(s) 51, 646, 670, 692, 723, 1017, 1053, 1115, 1182
LweI GCATC 3 cut(s) 372, 486, 503
MaeI CTAG 4 cut(s) 12, 134, 467, 650
MaeII ACGT 4 cut(s) 411, 483, 777, 1035
MaeIII GTNAC 3 cut(s) 443, 526, 1097
MalI GATC 3 cut(s) 428, 692, 782
MboI GATC 3 cut(s) 426, 690, 780
MboII GAAGA 7 cut(s) 232, 401, 853, 872, 1099, 1102, 1173
MflI RGATCY 1 cut(s) 426
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 2 cut(s) 7, 312
MluI ACGCGT 1 cut(s) 171
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 908
MmeI TCCRAC 1 cut(s) 634
Mox20I TGGCCA 1 cut(s) 545
MroXI GAANNNNTTC 2 cut(s) 144, 1158
MscI TGGCCA 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 1111
Msp20I TGGCCA 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 4 cut(s) 69, 438, 570, 764
MspR9I CCNGG 5 cut(s) 438, 570, 765, 939, 1140
MvaI CCWGG 2 cut(s) 939, 1140
MvnI CGCG 4 cut(s) 173, 226, 244, 637
MwoI GCNNNNNNNGC 4 cut(s) 74, 323, 347, 760
NciI CCSGG 3 cut(s) 438, 570, 765
NdeII GATC 3 cut(s) 426, 690, 780
NlaIII CATG 2 cut(s) 733, 922
NmuCI GTSAC 3 cut(s) 443, 526, 1097
NspI RCATGY 1 cut(s) 922
NspV TTCGAA 1 cut(s) 1152
OliI CACNNNNGTG 1 cut(s) 1111
PceI AGGCCT 2 cut(s) 471, 1158
PciI ACATGT 1 cut(s) 918
PdmI GAANNNNTTC 2 cut(s) 144, 1158
PfeI GAWTC 3 cut(s) 130, 952, 1143
Pfl23II CGTACG 1 cut(s) 642
PfoI TCCNGGA 1 cut(s) 937
PkrI GCNGC 9 cut(s) 41, 661, 682, 685, 738, 1007, 1043, 1105, 1172
PleI GAGTC 1 cut(s) 907
PpsI GAGTC 1 cut(s) 907
PpuMI RGGWCCY 1 cut(s) 944
PscI ACATGT 1 cut(s) 918
Psp5II RGGWCCY 1 cut(s) 944
Psp6I CCWGG 2 cut(s) 937, 1138
PspEI GGTNACC 1 cut(s) 443
PspGI CCWGG 2 cut(s) 937, 1138
PspLI CGTACG 1 cut(s) 642
PspPI GGNCC 2 cut(s) 944, 1136
PspPPI RGGWCCY 1 cut(s) 944
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 1 cut(s) 426
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
RseI CAYNNNNRTG 1 cut(s) 1111
SatI GCNGC 9 cut(s) 40, 660, 681, 684, 737, 1006, 1042, 1104, 1171
Sau3AI GATC 3 cut(s) 426, 690, 780
Sau96I GGNCC 2 cut(s) 944, 1136
SchI GAGTC 1 cut(s) 908
ScrFI CCNGG 5 cut(s) 438, 570, 765, 939, 1140
SfaNI GCATC 3 cut(s) 372, 486, 503
SfuI TTCGAA 1 cut(s) 1152
SinI GGWCC 2 cut(s) 944, 1136
SmiMI CAYNNNNRTG 1 cut(s) 1111
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
Sse9I AATT 2 cut(s) 7, 312
SseBI AGGCCT 2 cut(s) 471, 1158
SsiI CCGC 4 cut(s) 326, 746, 836, 1168
SspMI CTAG 4 cut(s) 12, 134, 467, 650
StuI AGGCCT 2 cut(s) 471, 1158
StyD4I CCNGG 5 cut(s) 436, 568, 763, 937, 1138
TaaI ACNGT 4 cut(s) 217, 235, 962, 1056
TaiI ACGT 4 cut(s) 414, 486, 780, 1038
TaqI TCGA 4 cut(s) 5, 783, 902, 1152
TasI AATT 2 cut(s) 7, 312
TfiI GAWTC 3 cut(s) 130, 952, 1143
TscAI CASTG 3 cut(s) 87, 238, 390
TseFI GTSAC 3 cut(s) 443, 526, 1097
TseI GCWGC 9 cut(s) 39, 659, 680, 683, 736, 1005, 1041, 1103, 1170
Tsp45I GTSAC 3 cut(s) 443, 526, 1097
TspDTI ATGAA 3 cut(s) 32, 718, 923
TspGWI ACGGA 4 cut(s) 419, 527, 534, 630
TspRI CASTG 3 cut(s) 87, 238, 390
VpaK11BI GGWCC 2 cut(s) 944, 1136
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 2 cut(s) 144, 1158
XspI CTAG 4 cut(s) 12, 134, 467, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.