Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02050 AT4G00040 |
| fragaria_vesca | FvH4_7g09471 |
| malus_domestica | MD07G1098500.v1.1 |
| prunus_persica | Prupe.2G122600_v2.0.a1 |
| pyrus_communis | pycom07g08120 |
| rosa_chinensis | RchiOBHm_Chr1g0346291 |
| rosa_laevigata | RLG00000028808 |
| rosa_multiflora | Rmu_co8385307.1_g000001 Rmu_sc0003363.1_g000039 Rmu_sc0003809.1_g000039 |
| rosa_roxburghii | Rroxscaffold_4G00308760 |
| rosa_rugosa | Rorug01G0178800 |
| rosa_samantha | Rh1AG198200 Rh1BG164300 Rh1CG183500 Rh1DG195000 |
| rosa_wichuraiana | Rw1G016660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1307 |
| Acc36I | ACCTGC | 2 cut(s) | 984, 1093 |
| AccI | GTMKAC | 1 cut(s) | 549 |
| AccII | CGCG | 1 cut(s) | 633 |
| AciI | CCGC | 1 cut(s) | 631 |
| AclWI | GGATC | 2 cut(s) | 253, 385 |
| AcoI | YGGCCR | 2 cut(s) | 628, 1026 |
| AdeI | CACNNNGTG | 1 cut(s) | 922 |
| AfaI | GTAC | 2 cut(s) | 474, 644 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 209, 232, 469, 678, 796, 854, 1120 |
| AgsI | TTSAA | 9 cut(s) | 17, 70, 452, 530, 961, 1042, 1051, 1225, 1292 |
| AjnI | CCWGG | 5 cut(s) | 208, 577, 853, 1075, 1276 |
| AleI | CACNNNNGTG | 1 cut(s) | 356 |
| Alw21I | GWGCWC | 2 cut(s) | 882, 1112 |
| Alw26I | GTCTC | 2 cut(s) | 734, 857 |
| AlwI | GGATC | 2 cut(s) | 253, 385 |
| Ama87I | CYCGRG | 1 cut(s) | 709 |
| ApeKI | GCWGC | 7 cut(s) | 654, 800, 821, 824, 1143, 1179, 1308 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1046 |
| AspA2I | CCTAGG | 1 cut(s) | 649 |
| AspLEI | GCGC | 3 cut(s) | 158, 805, 1308 |
| AspS9I | GGNCC | 3 cut(s) | 973, 1082, 1274 |
| AsuC2I | CCSGG | 4 cut(s) | 680, 710, 711, 719 |
| AsuHPI | GGTGA | 4 cut(s) | 68, 596, 661, 824 |
| AsuNHI | GCTAGC | 1 cut(s) | 491 |
| AvaI | CYCGRG | 1 cut(s) | 709 |
| AvaII | GGWCC | 2 cut(s) | 973, 1082 |
| AvrII | CCTAGG | 1 cut(s) | 649 |
| AxyI | CCTNAGG | 2 cut(s) | 264, 614 |
| BalI | TGGCCA | 1 cut(s) | 1028 |
| BanII | GRGCYC | 3 cut(s) | 428, 882, 1156 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 353, 385 |
| BbsI | GAAGAC | 2 cut(s) | 368, 537 |
| Bbv12I | GWGCWC | 2 cut(s) | 882, 1112 |
| BbvI | GCAGC | 6 cut(s) | 641, 787, 808, 836, 1155, 1191 |
| BccI | CCATC | 6 cut(s) | 443, 472, 809, 923, 1018, 1153 |
| BciT130I | CCWGG | 5 cut(s) | 210, 579, 855, 1077, 1278 |
| BciVI | GTATCC | 1 cut(s) | 565 |
| BcnI | CCSGG | 4 cut(s) | 680, 710, 711, 719 |
| BcoDI | GTCTC | 2 cut(s) | 734, 857 |
| BfaI | CTAG | 7 cut(s) | 366, 395, 413, 492, 650, 1103, 1136 |
| BfmI | CTRYAG | 3 cut(s) | 465, 822, 1313 |
| BfoI | RGCGCY | 1 cut(s) | 159 |
| BfuAI | ACCTGC | 2 cut(s) | 984, 1093 |
| BfuI | GTATCC | 1 cut(s) | 565 |
| BisI | GCNGC | 8 cut(s) | 631, 655, 801, 822, 825, 1144, 1180, 1309 |
| BlnI | CCTAGG | 1 cut(s) | 649 |
| BlpI | GCTNAGC | 2 cut(s) | 95, 427 |
| BlsI | GCNGC | 8 cut(s) | 632, 656, 802, 823, 826, 1145, 1181, 1310 |
| Bme1390I | CCNGG | 9 cut(s) | 210, 579, 680, 710, 711, 719, 855, 1077, 1278 |
| Bme18I | GGWCC | 2 cut(s) | 973, 1082 |
| BmeT110I | CYCGRG | 1 cut(s) | 709 |
| BmgT120I | GGNCC | 3 cut(s) | 973, 1082, 1274 |
| BmiI | GGNNCC | 1 cut(s) | 974 |
| BmrFI | CCNGG | 9 cut(s) | 210, 579, 680, 710, 711, 719, 855, 1077, 1278 |
| BmrI | ACTGGG | 1 cut(s) | 38 |
| BmsI | GCATC | 1 cut(s) | 513 |
| BmtI | GCTAGC | 1 cut(s) | 495 |
| BmuI | ACTGGG | 1 cut(s) | 38 |
| BpiI | GAAGAC | 2 cut(s) | 368, 537 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1264 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 95, 427 |
| BpuEI | CTTGAG | 2 cut(s) | 544, 1100 |
| BpuMI | CCSGG | 4 cut(s) | 680, 710, 711, 719 |
| BsaAI | YACGTR | 1 cut(s) | 553 |
| BsaI | GGTCTC | 1 cut(s) | 734 |
| BsaJI | CCNNGG | 7 cut(s) | 209, 384, 483, 649, 709, 1029, 1276 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 209, 232, 469, 678, 796, 854, 1120 |
| Bse118I | RCCGGY | 1 cut(s) | 671 |
| Bse1I | ACTGG | 2 cut(s) | 44, 524 |
| Bse21I | CCTNAGG | 2 cut(s) | 264, 614 |
| Bse3DI | GCAATG | 1 cut(s) | 157 |
| BseBI | CCWGG | 5 cut(s) | 210, 579, 855, 1077, 1278 |
| BseDI | CCNNGG | 7 cut(s) | 209, 384, 483, 649, 709, 1029, 1276 |
| BseGI | GGATG | 2 cut(s) | 123, 1072 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 209, 232, 469, 678, 796, 854, 1120 |
| BseMI | GCAATG | 1 cut(s) | 157 |
| BseMII | CTCAG | 8 cut(s) | 98, 278, 411, 441, 605, 729, 954, 995 |
| BseNI | ACTGG | 2 cut(s) | 44, 524 |
| BseRI | GAGGAG | 6 cut(s) | 16, 98, 101, 1019, 1232, 1253 |
| BseXI | GCAGC | 6 cut(s) | 641, 787, 808, 836, 1155, 1191 |
| BseYI | CCCAGC | 1 cut(s) | 1120 |
| BsgI | GTGCAG | 1 cut(s) | 1162 |
| Bsh1236I | CGCG | 1 cut(s) | 633 |
| BsiHKAI | GWGCWC | 2 cut(s) | 882, 1112 |
| BsiHKCI | CYCGRG | 1 cut(s) | 709 |
| BsiSI | CCGG | 4 cut(s) | 672, 679, 710, 718 |
| BslFI | GGGAC | 1 cut(s) | 986 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 209, 232, 469, 678, 796, 854, 1120 |
| BsmAI | GTCTC | 2 cut(s) | 734, 857 |
| BsmFI | GGGAC | 1 cut(s) | 986 |
| Bso31I | GGTCTC | 1 cut(s) | 734 |
| BsoBI | CYCGRG | 1 cut(s) | 709 |
| Bsp1286I | GDGCHC | 4 cut(s) | 428, 882, 1112, 1156 |
| Bsp143I | GATC | 3 cut(s) | 258, 390, 831 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 95, 427 |
| BspACI | CCGC | 1 cut(s) | 631 |
| BspCNI | CTCAG | 8 cut(s) | 97, 277, 412, 440, 606, 730, 953, 994 |
| BspFNI | CGCG | 1 cut(s) | 633 |
| BspLI | GGNNCC | 1 cut(s) | 974 |
| BspMAI | CTGCAG | 2 cut(s) | 469, 826 |
| BspMI | ACCTGC | 2 cut(s) | 984, 1093 |
| BspOI | GCTAGC | 1 cut(s) | 495 |
| BspPI | GGATC | 2 cut(s) | 253, 385 |
| BspTNI | GGTCTC | 1 cut(s) | 734 |
| BsrDI | GCAATG | 1 cut(s) | 157 |
| BsrFI | RCCGGY | 1 cut(s) | 671 |
| BsrI | ACTGG | 2 cut(s) | 44, 524 |
| BssAI | RCCGGY | 1 cut(s) | 671 |
| BssECI | CCNNGG | 7 cut(s) | 209, 384, 483, 649, 709, 1029, 1276 |
| BssMI | GATC | 3 cut(s) | 258, 390, 831 |
| BssT1I | CCWWGG | 4 cut(s) | 384, 483, 649, 1029 |
| Bst2UI | CCWGG | 5 cut(s) | 210, 579, 855, 1077, 1278 |
| Bst4CI | ACNGT | 3 cut(s) | 223, 358, 376 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 464 |
| BstBAI | YACGTR | 1 cut(s) | 553 |
| BstC8I | GCNNGC | 6 cut(s) | 198, 493, 601, 605, 778, 1260 |
| BstEII | GGTNACC | 1 cut(s) | 584 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 207 |
| BstF5I | GGATG | 2 cut(s) | 123, 1072 |
| BstFNI | CGCG | 1 cut(s) | 633 |
| BstH2I | RGCGCY | 1 cut(s) | 159 |
| BstHHI | GCGC | 3 cut(s) | 158, 805, 1308 |
| BstKTI | GATC | 3 cut(s) | 261, 393, 834 |
| BstMAI | GTCTC | 2 cut(s) | 734, 857 |
| BstMBI | GATC | 3 cut(s) | 258, 390, 831 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 464, 488, 501, 609, 777 |
| BstNI | CCWGG | 5 cut(s) | 210, 579, 855, 1077, 1278 |
| BstNSI | RCATGY | 1 cut(s) | 65 |
| BstPI | GGTNACC | 1 cut(s) | 584 |
| BstSCI | CCNGG | 9 cut(s) | 208, 577, 678, 708, 709, 717, 853, 1075, 1276 |
| BstSFI | CTRYAG | 3 cut(s) | 465, 822, 1313 |
| BstSNI | TACGTA | 1 cut(s) | 553 |
| BstUI | CGCG | 1 cut(s) | 633 |
| BstV1I | GCAGC | 6 cut(s) | 641, 787, 808, 836, 1155, 1191 |
| BstV2I | GAAGAC | 2 cut(s) | 368, 537 |
| BstX2I | RGATCY | 1 cut(s) | 390 |
| BstYI | RGATCY | 1 cut(s) | 390 |
| Bsu36I | CCTNAGG | 2 cut(s) | 264, 614 |
| BsuI | GTATCC | 1 cut(s) | 565 |
| BtsCI | GGATG | 2 cut(s) | 123, 1072 |
| BtsI | GCAGTG | 2 cut(s) | 474, 1132 |
| BtsIMutI | CAGTG | 2 cut(s) | 474, 1132 |
| BveI | ACCTGC | 2 cut(s) | 984, 1093 |
| Cac8I | GCNNGC | 6 cut(s) | 198, 493, 601, 605, 778, 1260 |
| CfoI | GCGC | 3 cut(s) | 158, 805, 1308 |
| Cfr10I | RCCGGY | 1 cut(s) | 671 |
| Cfr13I | GGNCC | 3 cut(s) | 973, 1082, 1274 |
| Cfr9I | CCCGGG | 1 cut(s) | 709 |
| CsiI | ACCWGGT | 1 cut(s) | 577 |
| Csp6I | GTAC | 2 cut(s) | 473, 643 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 733, 768 |
| CviAII | CATG | 6 cut(s) | 62, 182, 379, 874, 1201, 1303 |
| CviQI | GTAC | 2 cut(s) | 473, 643 |
| DpnI | GATC | 3 cut(s) | 260, 392, 833 |
| DpnII | GATC | 3 cut(s) | 258, 390, 831 |
| DraIII | CACNNNGTG | 1 cut(s) | 922 |
| EaeI | YGGCCR | 2 cut(s) | 628, 1026 |
| Ecl136II | GAGCTC | 1 cut(s) | 880 |
| Eco105I | TACGTA | 1 cut(s) | 553 |
| Eco130I | CCWWGG | 4 cut(s) | 384, 483, 649, 1029 |
| Eco147I | AGGCCT | 1 cut(s) | 242 |
| Eco24I | GRGCYC | 3 cut(s) | 428, 882, 1156 |
| Eco31I | GGTCTC | 1 cut(s) | 734 |
| Eco47I | GGWCC | 2 cut(s) | 973, 1082 |
| Eco53kI | GAGCTC | 1 cut(s) | 880 |
| Eco81I | CCTNAGG | 2 cut(s) | 264, 614 |
| Eco88I | CYCGRG | 1 cut(s) | 709 |
| Eco91I | GGTNACC | 1 cut(s) | 584 |
| EcoICRI | GAGCTC | 1 cut(s) | 880 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 207 |
| EcoO109I | RGGNCCY | 2 cut(s) | 973, 1082 |
| EcoO65I | GGTNACC | 1 cut(s) | 584 |
| EcoRII | CCWGG | 5 cut(s) | 208, 577, 853, 1075, 1276 |
| EcoT14I | CCWWGG | 4 cut(s) | 384, 483, 649, 1029 |
| EcoT38I | GRGCYC | 3 cut(s) | 428, 882, 1156 |
| ErhI | CCWWGG | 4 cut(s) | 384, 483, 649, 1029 |
| FaeI | CATG | 6 cut(s) | 65, 185, 382, 877, 1204, 1306 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 480, 512 |
| FaqI | GGGAC | 1 cut(s) | 986 |
| FatI | CATG | 6 cut(s) | 61, 181, 378, 873, 1200, 1302 |
| FblI | GTMKAC | 1 cut(s) | 549 |
| Fnu4HI | GCNGC | 8 cut(s) | 631, 655, 801, 822, 825, 1144, 1180, 1309 |
| FokI | GGATG | 2 cut(s) | 110, 1059 |
| FriOI | GRGCYC | 3 cut(s) | 428, 882, 1156 |
| Fsp4HI | GCNGC | 8 cut(s) | 631, 655, 801, 822, 825, 1144, 1180, 1309 |
| FspBI | CTAG | 7 cut(s) | 366, 395, 413, 492, 650, 1103, 1136 |
| FspI | TGCGCA | 1 cut(s) | 1307 |
| GlaI | GCGC | 3 cut(s) | 157, 804, 1307 |
| GluI | GCNGC | 8 cut(s) | 631, 655, 801, 822, 825, 1144, 1180, 1309 |
| GsaI | CCCAGC | 1 cut(s) | 1124 |
| HaeII | RGCGCY | 1 cut(s) | 159 |
| HapII | CCGG | 4 cut(s) | 672, 679, 710, 718 |
| HhaI | GCGC | 3 cut(s) | 158, 805, 1308 |
| Hin1II | CATG | 6 cut(s) | 65, 185, 382, 877, 1204, 1306 |
| Hin6I | GCGC | 3 cut(s) | 156, 803, 1306 |
| HinP1I | GCGC | 3 cut(s) | 156, 803, 1306 |
| HindIII | AAGCTT | 1 cut(s) | 962 |
| HinfI | GANTC | 2 cut(s) | 865, 1296 |
| HpaII | CCGG | 4 cut(s) | 672, 679, 710, 718 |
| HphI | GGTGA | 4 cut(s) | 68, 596, 661, 824 |
| Hpy166II | GTNNAC | 1 cut(s) | 550 |
| Hpy188I | TCNGA | 7 cut(s) | 87, 440, 572, 739, 943, 984, 1158 |
| Hpy188III | TCNNGA | 2 cut(s) | 266, 293 |
| Hpy8I | GTNNAC | 1 cut(s) | 550 |
| Hpy99I | CGWCG | 1 cut(s) | 626 |
| HpyAV | CCTTC | 9 cut(s) | 76, 110, 208, 253, 941, 963, 1036, 1228, 1286 |
| HpyCH4III | ACNGT | 3 cut(s) | 223, 358, 376 |
| HpyCH4IV | ACGT | 3 cut(s) | 543, 552, 624 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 464, 488, 501, 609, 777 |
| HpySE526I | ACGT | 3 cut(s) | 543, 552, 624 |
| Hsp92II | CATG | 6 cut(s) | 65, 185, 382, 877, 1204, 1306 |
| HspAI | GCGC | 3 cut(s) | 156, 803, 1306 |
| Kzo9I | GATC | 3 cut(s) | 258, 390, 831 |
| LmnI | GCTCC | 3 cut(s) | 205, 818, 877 |
| Lsp1109I | GCAGC | 6 cut(s) | 641, 787, 808, 836, 1155, 1191 |
| LweI | GCATC | 1 cut(s) | 513 |
| MabI | ACCWGGT | 1 cut(s) | 577 |
| MaeI | CTAG | 7 cut(s) | 366, 395, 413, 492, 650, 1103, 1136 |
| MaeII | ACGT | 3 cut(s) | 543, 552, 624 |
| MaeIII | GTNAC | 3 cut(s) | 293, 584, 667 |
| MalI | GATC | 3 cut(s) | 260, 392, 833 |
| MboI | GATC | 3 cut(s) | 258, 390, 831 |
| MboII | GAAGA | 6 cut(s) | 159, 373, 542, 997, 1237, 1259 |
| MflI | RGATCY | 1 cut(s) | 390 |
| MhlI | GDGCHC | 4 cut(s) | 428, 882, 1112, 1156 |
| MlsI | TGGCCA | 1 cut(s) | 1028 |
| MluCI | AATT | 5 cut(s) | 176, 329, 453, 747, 1281 |
| MluNI | TGGCCA | 1 cut(s) | 1028 |
| MlyI | GAGTC | 1 cut(s) | 859 |
| MmeI | TCCRAC | 2 cut(s) | 56, 817 |
| Mox20I | TGGCCA | 1 cut(s) | 1028 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1046 |
| MscI | TGGCCA | 1 cut(s) | 1028 |
| MseI | TTAA | 3 cut(s) | 321, 954, 1095 |
| MslI | CAYNNNNRTG | 2 cut(s) | 356, 377 |
| Msp20I | TGGCCA | 1 cut(s) | 1028 |
| MspA1I | CMGCKG | 1 cut(s) | 827 |
| MspI | CCGG | 4 cut(s) | 672, 679, 710, 718 |
| MspR9I | CCNGG | 9 cut(s) | 210, 579, 680, 710, 711, 719, 855, 1077, 1278 |
| MvaI | CCWGG | 5 cut(s) | 210, 579, 855, 1077, 1278 |
| MvnI | CGCG | 1 cut(s) | 633 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 464, 488, 501, 609, 777 |
| NciI | CCSGG | 4 cut(s) | 680, 710, 711, 719 |
| NdeII | GATC | 3 cut(s) | 258, 390, 831 |
| NheI | GCTAGC | 1 cut(s) | 491 |
| NlaIII | CATG | 6 cut(s) | 65, 185, 382, 877, 1204, 1306 |
| NlaIV | GGNNCC | 1 cut(s) | 974 |
| NmuCI | GTSAC | 3 cut(s) | 293, 584, 667 |
| NsbI | TGCGCA | 1 cut(s) | 1307 |
| NspI | RCATGY | 1 cut(s) | 65 |
| OliI | CACNNNNGTG | 1 cut(s) | 356 |
| PceI | AGGCCT | 1 cut(s) | 242 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 549, 630, 999 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1046 |
| PfeI | GAWTC | 1 cut(s) | 1296 |
| PfoI | TCCNGGA | 1 cut(s) | 1075 |
| PkrI | GCNGC | 8 cut(s) | 632, 656, 802, 823, 826, 1145, 1181, 1310 |
| PleI | GAGTC | 1 cut(s) | 859 |
| PpsI | GAGTC | 1 cut(s) | 859 |
| Ppu21I | YACGTR | 1 cut(s) | 553 |
| PpuMI | RGGWCCY | 2 cut(s) | 973, 1082 |
| Psp124BI | GAGCTC | 1 cut(s) | 882 |
| Psp5II | RGGWCCY | 2 cut(s) | 973, 1082 |
| Psp6I | CCWGG | 5 cut(s) | 208, 577, 853, 1075, 1276 |
| PspEI | GGTNACC | 1 cut(s) | 584 |
| PspFI | CCCAGC | 1 cut(s) | 1120 |
| PspGI | CCWGG | 5 cut(s) | 208, 577, 853, 1075, 1276 |
| PspN4I | GGNNCC | 1 cut(s) | 974 |
| PspPI | GGNCC | 3 cut(s) | 973, 1082, 1274 |
| PspPPI | RGGWCCY | 2 cut(s) | 973, 1082 |
| PstI | CTGCAG | 2 cut(s) | 469, 826 |
| PsuI | RGATCY | 1 cut(s) | 390 |
| PvuII | CAGCTG | 1 cut(s) | 827 |
| RsaI | GTAC | 2 cut(s) | 474, 644 |
| RsaNI | GTAC | 2 cut(s) | 473, 643 |
| RseI | CAYNNNNRTG | 2 cut(s) | 356, 377 |
| SacI | GAGCTC | 1 cut(s) | 882 |
| SaqAI | TTAA | 3 cut(s) | 321, 954, 1095 |
| SatI | GCNGC | 8 cut(s) | 631, 655, 801, 822, 825, 1144, 1180, 1309 |
| Sau3AI | GATC | 3 cut(s) | 258, 390, 831 |
| Sau96I | GGNCC | 3 cut(s) | 973, 1082, 1274 |
| SchI | GAGTC | 1 cut(s) | 859 |
| ScrFI | CCNGG | 9 cut(s) | 210, 579, 680, 710, 711, 719, 855, 1077, 1278 |
| SduI | GDGCHC | 4 cut(s) | 428, 882, 1112, 1156 |
| SexAI | ACCWGGT | 1 cut(s) | 577 |
| SfaNI | GCATC | 1 cut(s) | 513 |
| SfcI | CTRYAG | 3 cut(s) | 465, 822, 1313 |
| SinI | GGWCC | 2 cut(s) | 973, 1082 |
| SmaI | CCCGGG | 1 cut(s) | 711 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 356, 377 |
| SmlI | CTYRAG | 2 cut(s) | 559, 1115 |
| SmoI | CTYRAG | 2 cut(s) | 559, 1115 |
| SnaBI | TACGTA | 1 cut(s) | 553 |
| Sse9I | AATT | 5 cut(s) | 176, 329, 453, 747, 1281 |
| SseBI | AGGCCT | 1 cut(s) | 242 |
| SsiI | CCGC | 1 cut(s) | 631 |
| SspMI | CTAG | 7 cut(s) | 366, 395, 413, 492, 650, 1103, 1136 |
| SstI | GAGCTC | 1 cut(s) | 882 |
| StuI | AGGCCT | 1 cut(s) | 242 |
| StyD4I | CCNGG | 9 cut(s) | 208, 577, 678, 708, 709, 717, 853, 1075, 1276 |
| StyI | CCWWGG | 4 cut(s) | 384, 483, 649, 1029 |
| TaaI | ACNGT | 3 cut(s) | 223, 358, 376 |
| TaiI | ACGT | 3 cut(s) | 546, 555, 627 |
| TaqI | TCGA | 3 cut(s) | 137, 144, 1002 |
| TasI | AATT | 5 cut(s) | 176, 329, 453, 747, 1281 |
| TatI | WGTACW | 1 cut(s) | 642 |
| TauI | GCSGC | 1 cut(s) | 633 |
| TfiI | GAWTC | 1 cut(s) | 1296 |
| Tru1I | TTAA | 3 cut(s) | 321, 954, 1095 |
| Tru9I | TTAA | 3 cut(s) | 321, 954, 1095 |
| TscAI | CASTG | 2 cut(s) | 474, 1132 |
| TseFI | GTSAC | 3 cut(s) | 293, 584, 667 |
| TseI | GCWGC | 7 cut(s) | 654, 800, 821, 824, 1143, 1179, 1308 |
| Tsp45I | GTSAC | 3 cut(s) | 293, 584, 667 |
| TspDTI | ATGAA | 3 cut(s) | 862, 1026, 1061 |
| TspMI | CCCGGG | 1 cut(s) | 709 |
| TspRI | CASTG | 2 cut(s) | 474, 1132 |
| VpaK11BI | GGWCC | 2 cut(s) | 973, 1082 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 207 |
| XceI | RCATGY | 1 cut(s) | 65 |
| XmaI | CCCGGG | 1 cut(s) | 709 |
| XmaJI | CCTAGG | 1 cut(s) | 649 |
| XmiI | GTMKAC | 1 cut(s) | 549 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1046 |
| XspI | CTAG | 7 cut(s) | 366, 395, 413, 492, 650, 1103, 1136 |