Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385307.1

Orthogroup ID

OG0012948

Physical Location & Seq

Genomic Coordinates Forward (+)

86 .. 1021

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385307.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgtcaaaggagatcctagacaaataccctgaactagcaactgagggcacagccactatcagacaaaggcttgaagtcacaaaccctgcagtggtagagatggccttggaagcaagccttgcttgtatcaaggaatggggcagaccagttgaagacattactcatgttgtctatgtctcctcaagtgaaataagactccctggaggtgacctctaccttgccagcaagctcggcctgaggaacgacgtaggccgtgtcatgctctatttcttaggctgctatggtggtgttactggcctccgggttgccaaagacatagctgaaaacaacccgggaagccgggtcttgttaaccacttccgaaaccaccattcttggtttcaggccccccaacaaggcgcgcccatacgaccttgttggggctgcacttttcggtgatggagctgctgctgtgatcattggaagcaacccggtttggggtcaagagtctcctttcatggagctcaactatgctgtccagcaattcctccctgacacacacaatgtgatcgatggaaggctctccgaggaaggcatcaacttcaagctgggaagggaccttcctcagaagattgatgagaacattgaagtgttttgcaagaaactcatggcaaaagctaatctcaaggacttcaatgagttgttctgggctgttcatcctggtgggcctgcaatccttaacaagctagaggggactctgaagctcacaagtgacaagctcgagtgtagcagacaggccttgatggactatggcaatgtcagcagcaacaccattttctatgtgatggagaagatgagagaggagttgaggctgaaagaagggagggaagaatggggacttgctttggcttttggaccggggatcacatttgaaggcattctacttcgaggcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N PPR PPR_1 PPR_2 PPR_3

Protein Analysis

311

Amino Acids

34.33

Weight (kDa)

5.26

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02050 AT4G00040
fragaria_vesca	FvH4_7g09471
malus_domestica	MD07G1098500.v1.1
prunus_persica	Prupe.2G122600_v2.0.a1
pyrus_communis	pycom07g08120
rosa_chinensis	RchiOBHm_Chr1g0346291
rosa_laevigata	RLG00000028808
rosa_multiflora	Rmu_co8385307.1_g000001 Rmu_sc0003363.1_g000039 Rmu_sc0003809.1_g000039
rosa_roxburghii	Rroxscaffold_4G00308760
rosa_rugosa	Rorug01G0178800
rosa_samantha	Rh1AG198200 Rh1BG164300 Rh1CG183500 Rh1DG195000
rosa_wichuraiana	Rw1G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	400
AclWI	GGATC	2 cut(s)	7, 908
AcuI	CTGAAG	1 cut(s)	758
AdeI	CACNNNGTG	1 cut(s)	544
AfiI	CCNNNNNNNGG	5 cut(s)	91, 394, 418, 475, 476
AgsI	TTSAA	6 cut(s)	74, 152, 583, 626, 673, 911
AjnI	CCWGG	2 cut(s)	199, 697
AluBI	AGCT	9 cut(s)	229, 320, 443, 502, 586, 656, 724, 742, 757
AluI	AGCT	9 cut(s)	229, 320, 443, 502, 586, 656, 724, 742, 757
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	181, 492
AlwI	GGATC	2 cut(s)	7, 908
Ama87I	CYCGRG	2 cut(s)	331, 758
AoxI	GGCC	8 cut(s)	102, 232, 250, 295, 383, 704, 774, 928
ApeKI	GCWGC	5 cut(s)	276, 422, 443, 446, 801
AscI	GGCGCGCC	1 cut(s)	398
Asp700I	GAANNNNTTC	1 cut(s)	915
AspLEI	GCGC	2 cut(s)	400, 402
AspS9I	GGNCC	4 cut(s)	384, 595, 704, 893
AsuC2I	CCSGG	6 cut(s)	302, 332, 333, 341, 470, 897
AsuHPI	GGTGA	2 cut(s)	218, 446
AvaI	CYCGRG	2 cut(s)	331, 758
AvaII	GGWCC	2 cut(s)	595, 893
AxyI	CCTNAGG	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	504
BarI	GAAGNNNNNNTAC	2 cut(s)	903, 935
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	5 cut(s)	263, 409, 430, 433, 813
BccI	CCATC	5 cut(s)	94, 431, 545, 775, 817
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	2 cut(s)	201, 699
BclI	TGATCA	1 cut(s)	453
BcnI	CCSGG	6 cut(s)	302, 332, 333, 341, 470, 897
BcoDI	GTCTC	2 cut(s)	181, 492
BfaI	CTAG	3 cut(s)	17, 35, 725
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	5 cut(s)	277, 423, 444, 447, 802
BlsI	GCNGC	5 cut(s)	278, 424, 445, 448, 803
Bme1390I	CCNGG	8 cut(s)	201, 302, 332, 333, 341, 470, 699, 897
Bme18I	GGWCC	2 cut(s)	595, 893
BmeT110I	CYCGRG	2 cut(s)	331, 758
BmgT120I	GGNCC	4 cut(s)	384, 595, 704, 893
BmiI	GGNNCC	2 cut(s)	386, 596
BmrFI	CCNGG	8 cut(s)	201, 302, 332, 333, 341, 470, 699, 897
BmsI	GCATC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	166, 647
BpuMI	CCSGG	6 cut(s)	302, 332, 333, 341, 470, 897
Bsa29I	ATCGAT	1 cut(s)	549
BsaJI	CCNNGG	5 cut(s)	105, 199, 331, 564, 896
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 394, 418, 475, 476
Bse1I	ACTGG	2 cut(s)	146, 298
Bse21I	CCTNAGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	799
BseBI	CCWGG	2 cut(s)	201, 699
BseCI	ATCGAT	1 cut(s)	549
BseDI	CCNNGG	5 cut(s)	105, 199, 331, 564, 896
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	5 cut(s)	91, 394, 418, 475, 476
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	3 cut(s)	33, 227, 617
BseNI	ACTGG	2 cut(s)	146, 298
BsePI	GCGCGC	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	169, 854
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	5 cut(s)	263, 409, 430, 433, 813
BseYI	CCCAGC	1 cut(s)	586
BsgI	GTGCAG	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	400
BshFI	GGCC	8 cut(s)	104, 234, 252, 297, 385, 706, 776, 930
BshVI	ATCGAT	1 cut(s)	549
BsiHKAI	GWGCWC	1 cut(s)	504
BsiHKCI	CYCGRG	2 cut(s)	331, 758
BsiSI	CCGG	5 cut(s)	301, 332, 340, 470, 896
BslFI	GGGAC	3 cut(s)	608, 745, 888
BslI	CCNNNNNNNGG	5 cut(s)	91, 394, 418, 475, 476
BsmAI	GTCTC	2 cut(s)	181, 492
BsmFI	GGGAC	3 cut(s)	608, 745, 888
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	8 cut(s)	104, 234, 252, 297, 385, 706, 776, 930
BsoBI	CYCGRG	2 cut(s)	331, 758
Bsp1286I	GDGCHC	2 cut(s)	50, 504
Bsp143I	GATC	4 cut(s)	12, 453, 546, 900
BspANI	GGCC	8 cut(s)	104, 234, 252, 297, 385, 706, 776, 930
BspCNI	CTCAG	3 cut(s)	34, 228, 616
BspDI	ATCGAT	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	386, 596
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	2 cut(s)	7, 908
BsrDI	GCAATG	1 cut(s)	799
BsrI	ACTGG	2 cut(s)	146, 298
BssECI	CCNNGG	5 cut(s)	105, 199, 331, 564, 896
BssHII	GCGCGC	1 cut(s)	398
BssMI	GATC	4 cut(s)	12, 453, 546, 900
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	201, 699
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	5 cut(s)	115, 223, 227, 400, 708
BstDEI	CTNAG	4 cut(s)	42, 236, 271, 603
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	1 cut(s)	400
BstHHI	GCGC	2 cut(s)	400, 402
BstKTI	GATC	4 cut(s)	15, 456, 549, 903
BstMAI	GTCTC	2 cut(s)	181, 492
BstMBI	GATC	4 cut(s)	12, 453, 546, 900
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 119, 231, 798
BstNI	CCWGG	2 cut(s)	201, 699
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	8 cut(s)	199, 300, 330, 331, 339, 468, 697, 895
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	50
BstUI	CGCG	1 cut(s)	400
BstV1I	GCAGC	5 cut(s)	263, 409, 430, 433, 813
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
Bsu15I	ATCGAT	1 cut(s)	549
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	8 cut(s)	104, 234, 252, 297, 385, 706, 776, 930
BsuTUI	ATCGAT	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	694
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	5 cut(s)	115, 223, 227, 400, 708
CfoI	GCGC	2 cut(s)	400, 402
Cfr13I	GGNCC	4 cut(s)	384, 595, 704, 893
Cfr9I	CCCGGG	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	549
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	4 cut(s)	164, 259, 496, 646
DdeI	CTNAG	4 cut(s)	42, 236, 271, 603
DpnI	GATC	4 cut(s)	14, 455, 548, 902
DpnII	GATC	4 cut(s)	12, 453, 546, 900
DraIII	CACNNNGTG	1 cut(s)	544
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	2 cut(s)	776, 930
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	2 cut(s)	595, 893
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	758
Eco81I	CCTNAGG	1 cut(s)	236
Eco88I	CYCGRG	2 cut(s)	331, 758
Eco91I	GGTNACC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	2 cut(s)	384, 595
EcoO65I	GGTNACC	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	199, 697
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	4 cut(s)	167, 262, 499, 649
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 106, 138
FaqI	GGGAC	3 cut(s)	608, 745, 888
FatI	CATG	4 cut(s)	163, 258, 495, 645
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	5 cut(s)	277, 423, 444, 447, 802
FokI	GGATG	1 cut(s)	681
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	5 cut(s)	277, 423, 444, 447, 802
FspBI	CTAG	3 cut(s)	17, 35, 725
GlaI	GCGC	2 cut(s)	399, 401
GluI	GCNGC	5 cut(s)	277, 423, 444, 447, 802
GsaI	CCCAGC	1 cut(s)	590
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	8 cut(s)	104, 234, 252, 297, 385, 706, 776, 930
HapII	CCGG	5 cut(s)	301, 332, 340, 470, 896
HhaI	GCGC	2 cut(s)	400, 402
Hin1II	CATG	4 cut(s)	167, 262, 499, 649
Hin6I	GCGC	2 cut(s)	398, 400
HinP1I	GCGC	2 cut(s)	398, 400
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	3 cut(s)	195, 485, 733
HpaI	GTTAAC	1 cut(s)	351
HpaII	CCGG	5 cut(s)	301, 332, 340, 470, 896
HphI	GGTGA	2 cut(s)	218, 446
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	5 cut(s)	62, 361, 565, 606, 738
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	6 cut(s)	549, 563, 585, 608, 851, 905
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	89, 425, 636, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 119, 231, 798
HpyF3I	CTNAG	4 cut(s)	42, 236, 271, 603
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	167, 262, 499, 649
HspAI	GCGC	2 cut(s)	398, 400
Ksp22I	TGATCA	1 cut(s)	453
KspAI	GTTAAC	1 cut(s)	351
Kzo9I	GATC	4 cut(s)	12, 453, 546, 900
LmnI	GCTCC	2 cut(s)	440, 499
Lsp1109I	GCAGC	5 cut(s)	263, 409, 430, 433, 813
LweI	GCATC	1 cut(s)	582
MaeI	CTAG	3 cut(s)	17, 35, 725
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	4 cut(s)	76, 206, 289, 749
MalI	GATC	4 cut(s)	14, 455, 548, 902
MboI	GATC	4 cut(s)	12, 453, 546, 900
MboII	GAAGA	4 cut(s)	164, 619, 841, 878
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	2 cut(s)	50, 504
MluCI	AATT	1 cut(s)	521
MlyI	GAGTC	3 cut(s)	189, 494, 727
MroXI	GAANNNNTTC	1 cut(s)	915
MseI	TTAA	2 cut(s)	350, 717
MslI	CAYNNNNRTG	2 cut(s)	626, 699
MspI	CCGG	5 cut(s)	301, 332, 340, 470, 896
MspR9I	CCNGG	8 cut(s)	201, 302, 332, 333, 341, 470, 699, 897
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	2 cut(s)	201, 699
MvnI	CGCG	1 cut(s)	400
MwoI	GCNNNNNNNGC	4 cut(s)	110, 119, 231, 798
NciI	CCSGG	6 cut(s)	302, 332, 333, 341, 470, 897
NdeII	GATC	4 cut(s)	12, 453, 546, 900
NlaIII	CATG	4 cut(s)	167, 262, 499, 649
NlaIV	GGNNCC	2 cut(s)	386, 596
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	3 cut(s)	76, 206, 749
PaeR7I	CTCGAG	1 cut(s)	758
PalAI	GGCGCGCC	1 cut(s)	398
PauI	GCGCGC	1 cut(s)	398
PceI	AGGCCT	2 cut(s)	776, 930
PctI	GAATGC	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	915
PkrI	GCNGC	5 cut(s)	278, 424, 445, 448, 803
PleI	GAGTC	3 cut(s)	189, 493, 727
PpsI	GAGTC	3 cut(s)	189, 493, 727
PpuMI	RGGWCCY	1 cut(s)	595
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	595
Psp6I	CCWGG	2 cut(s)	199, 697
PspEI	GGTNACC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	586
PspGI	CCWGG	2 cut(s)	199, 697
PspN4I	GGNNCC	2 cut(s)	386, 596
PspPI	GGNCC	4 cut(s)	384, 595, 704, 893
PspPPI	RGGWCCY	1 cut(s)	595
PspXI	VCTCGAGB	1 cut(s)	758
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	12
PteI	GCGCGC	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	626, 699
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	350, 717
SatI	GCNGC	5 cut(s)	277, 423, 444, 447, 802
Sau3AI	GATC	4 cut(s)	12, 453, 546, 900
Sau96I	GGNCC	4 cut(s)	384, 595, 704, 893
SchI	GAGTC	3 cut(s)	189, 494, 727
ScrFI	CCNGG	8 cut(s)	201, 302, 332, 333, 341, 470, 699, 897
SduI	GDGCHC	2 cut(s)	50, 504
SfaNI	GCATC	1 cut(s)	582
SfcI	CTRYAG	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	758
SgsI	GGCGCGCC	1 cut(s)	398
SinI	GGWCC	2 cut(s)	595, 893
SlaI	CTCGAG	1 cut(s)	758
SmaI	CCCGGG	1 cut(s)	333
SmiMI	CAYNNNNRTG	2 cut(s)	626, 699
SmlI	CTYRAG	3 cut(s)	181, 662, 758
SmoI	CTYRAG	3 cut(s)	181, 662, 758
Sse9I	AATT	1 cut(s)	521
SseBI	AGGCCT	2 cut(s)	776, 930
SspMI	CTAG	3 cut(s)	17, 35, 725
SstI	GAGCTC	1 cut(s)	504
StuI	AGGCCT	2 cut(s)	776, 930
StyD4I	CCNGG	8 cut(s)	199, 300, 330, 331, 339, 468, 697, 895
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	549, 759, 925
TasI	AATT	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	350, 717
Tru9I	TTAA	2 cut(s)	350, 717
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	3 cut(s)	76, 206, 749
TseI	GCWGC	5 cut(s)	276, 422, 443, 446, 801
Tsp45I	GTSAC	3 cut(s)	76, 206, 749
TspDTI	ATGAA	2 cut(s)	484, 683
TspMI	CCCGGG	1 cut(s)	331
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	595, 893
XhoI	CTCGAG	1 cut(s)	758
XmaI	CCCGGG	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	3 cut(s)	17, 35, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.