Rmu_sc0003363.1_g000039

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003363.1
Physical Location & Seq
Forward (+)
200365 .. 201867
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003363.1_g000039.1.cds

Sequence Viewer

Length: 1164 bp
atgtcgaaagtacaaagcaataggaatggttctgctaagcaactccatgctccgacaccggggaaggcaacagttcttgcattgggtaaggccttcccgagccaaatcatccctcaggattgcttggtcgagggttacattcgtgacacgaaatgtgcagatgttgccatcaaggagaaactggagcggctctgcaaaaccacaactgtgaagactaggtacacagtgatgtcaaaggagatcctagacaaataccctgaactagcaactgagggcacagccactatcagacaaaggcttgaagtcacaaaccctgcagtggtagagatggccttggaagcaagccttgcttgtatcaaggaatggggcagaccagttgaagacattactcatgttgtctatgtctcctcaagtgaaataagactccctggaggtgacctctaccttgccagcaagctcggcctgaggaacgacgtaggccgtgtcatgctctatttcttaggctgctatggtggtgttactggcctccgggttgccaaagacatagctgaaaacaacccgggaagccgggtcttgttaaccacttccgaaaccaccattcttggtttcaggccccccaacaaggcgcgcccatacgaccttgttggggctgcacttttcggtgatggagctgctgctgtgatcattggaagcaacccggtttggggtcaagagtctcctttcatggagctcaactatgctgtccagcaattcctccctgacacacacaatgtgatcgatggaaggctctccgaggaaggcatcaacttcaagctgggaagggaccttcctcagaagattgatgagaacattgaagtgttttgcaagaaactcatggcaaaagctaatctcaaggacttcaatgagttgttctgggctgttcatcctggtgggcctgcaatccttaacaagctagaggggactctgaagctcacaagtgacaagctcgagtgtagcagacaggccttgatggactatggcaatgtcagcagcaacaccattttctatgtgatggagaagatgagagaggagttgaggctgaaagaagggagggaagaatggggacttgctttggcttttggaccggggatcacatttgaaggcattctacttcgaggcctgtaa

Protein Analysis

387

Amino Acids

42.63

Weight (kDa)

6.92

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012948)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 187
AccII CGCG 1 cut(s) 628
AciI CCGC 1 cut(s) 187
AclWI GGATC 2 cut(s) 235, 1136
AcuI CTGAAG 1 cut(s) 986
AdeI CACNNNGTG 1 cut(s) 772
AfaI GTAC 2 cut(s) 12, 221
AfiI CCNNNNNNNGG 6 cut(s) 59, 319, 622, 646, 703, 704
AgsI TTSAA 6 cut(s) 302, 380, 811, 854, 901, 1139
AjnI CCWGG 2 cut(s) 427, 925
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 9 cut(s) 457, 548, 671, 730, 814, 884, 952, 970, 985
AluI AGCT 9 cut(s) 457, 548, 671, 730, 814, 884, 952, 970, 985
Alw21I GWGCWC 1 cut(s) 732
Alw26I GTCTC 2 cut(s) 409, 720
AlwI GGATC 2 cut(s) 235, 1136
Ama87I CYCGRG 3 cut(s) 97, 559, 986
AoxI GGCC 9 cut(s) 90, 330, 460, 478, 523, 611, 932, 1002, 1156
ApeKI GCWGC 5 cut(s) 504, 650, 671, 674, 1029
AscI GGCGCGCC 1 cut(s) 626
Asp700I GAANNNNTTC 1 cut(s) 1143
AspLEI GCGC 2 cut(s) 628, 630
AspS9I GGNCC 4 cut(s) 612, 823, 932, 1121
AsuC2I CCSGG 7 cut(s) 60, 530, 560, 561, 569, 698, 1125
AsuHPI GGTGA 2 cut(s) 446, 674
AvaI CYCGRG 3 cut(s) 97, 559, 986
AvaII GGWCC 2 cut(s) 823, 1121
AxyI CCTNAGG 2 cut(s) 114, 464
BaeGI GKGCMC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 732
BarI GAAGNNNNNNTAC 4 cut(s) 203, 235, 1131, 1163
BbsI GAAGAC 2 cut(s) 218, 387
Bbv12I GWGCWC 1 cut(s) 732
BbvI GCAGC 5 cut(s) 491, 637, 658, 661, 1041
BccI CCATC 6 cut(s) 176, 322, 659, 773, 1003, 1045
BceAI ACGGC 1 cut(s) 465
BciT130I CCWGG 2 cut(s) 429, 927
BclI TGATCA 1 cut(s) 681
BcnI CCSGG 7 cut(s) 60, 530, 560, 561, 569, 698, 1125
BcoDI GTCTC 2 cut(s) 409, 720
BfaI CTAG 4 cut(s) 216, 245, 263, 953
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 6 cut(s) 188, 505, 651, 672, 675, 1030
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 6 cut(s) 189, 506, 652, 673, 676, 1031
Bme1390I CCNGG 9 cut(s) 60, 429, 530, 560, 561, 569, 698, 927, 1125
Bme18I GGWCC 2 cut(s) 823, 1121
BmeT110I CYCGRG 3 cut(s) 97, 559, 986
BmgT120I GGNCC 4 cut(s) 612, 823, 932, 1121
BmiI GGNNCC 2 cut(s) 614, 824
BmrFI CCNGG 9 cut(s) 60, 429, 530, 560, 561, 569, 698, 927, 1125
BmsI GCATC 1 cut(s) 810
BpiI GAAGAC 2 cut(s) 218, 387
BplI GAGNNNNNCTC 2 cut(s) 423, 455
BpmI CTGGAG 2 cut(s) 203, 450
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 394, 875
BpuMI CCSGG 7 cut(s) 60, 530, 560, 561, 569, 698, 1125
Bsa29I ATCGAT 1 cut(s) 777
BsaJI CCNNGG 6 cut(s) 59, 333, 427, 559, 792, 1124
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 319, 622, 646, 703, 704
Bse1I ACTGG 3 cut(s) 186, 374, 526
Bse21I CCTNAGG 2 cut(s) 114, 464
Bse3DI GCAATG 1 cut(s) 1027
BseBI CCWGG 2 cut(s) 429, 927
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 6 cut(s) 59, 333, 427, 559, 792, 1124
BseGI GGATG 2 cut(s) 108, 922
BseLI CCNNNNNNNGG 6 cut(s) 59, 319, 622, 646, 703, 704
BseMI GCAATG 1 cut(s) 1027
BseMII CTCAG 4 cut(s) 128, 261, 455, 845
BseNI ACTGG 3 cut(s) 186, 374, 526
BsePI GCGCGC 1 cut(s) 626
BseRI GAGGAG 2 cut(s) 397, 1082
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 5 cut(s) 491, 637, 658, 661, 1041
BseYI CCCAGC 1 cut(s) 814
BsgI GTGCAG 2 cut(s) 177, 636
Bsh1236I CGCG 1 cut(s) 628
BshFI GGCC 9 cut(s) 92, 332, 462, 480, 525, 613, 934, 1004, 1158
BshVI ATCGAT 1 cut(s) 777
BsiHKAI GWGCWC 1 cut(s) 732
BsiHKCI CYCGRG 3 cut(s) 97, 559, 986
BsiSI CCGG 6 cut(s) 59, 529, 560, 568, 698, 1124
BslFI GGGAC 3 cut(s) 836, 973, 1116
BslI CCNNNNNNNGG 6 cut(s) 59, 319, 622, 646, 703, 704
BsmAI GTCTC 2 cut(s) 409, 720
BsmFI GGGAC 3 cut(s) 836, 973, 1116
BsmI GAATGC 1 cut(s) 1143
BsnI GGCC 9 cut(s) 92, 332, 462, 480, 525, 613, 934, 1004, 1158
BsoBI CYCGRG 3 cut(s) 97, 559, 986
Bsp1286I GDGCHC 2 cut(s) 278, 732
Bsp143I GATC 4 cut(s) 240, 681, 774, 1128
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 1 cut(s) 187
BspANI GGCC 9 cut(s) 92, 332, 462, 480, 525, 613, 934, 1004, 1158
BspCNI CTCAG 4 cut(s) 127, 262, 456, 844
BspDI ATCGAT 1 cut(s) 777
BspFNI CGCG 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 614, 824
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 2 cut(s) 235, 1136
BsrBI CCGCTC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 1027
BsrI ACTGG 3 cut(s) 186, 374, 526
BssECI CCNNGG 6 cut(s) 59, 333, 427, 559, 792, 1124
BssHII GCGCGC 1 cut(s) 626
BssMI GATC 4 cut(s) 240, 681, 774, 1128
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 429, 927
Bst4CI ACNGT 3 cut(s) 73, 208, 226
BstAPI GCANNNNNTGC 2 cut(s) 164, 347
BstC8I GCNNGC 5 cut(s) 343, 451, 455, 628, 936
BstDEI CTNAG 6 cut(s) 36, 114, 270, 464, 499, 831
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 2 cut(s) 108, 922
BstFNI CGCG 1 cut(s) 628
BstHHI GCGC 2 cut(s) 628, 630
BstKTI GATC 4 cut(s) 243, 684, 777, 1131
BstMAI GTCTC 2 cut(s) 409, 720
BstMBI GATC 4 cut(s) 240, 681, 774, 1128
BstMWI GCNNNNNNNGC 5 cut(s) 164, 338, 347, 459, 1026
BstNI CCWGG 2 cut(s) 429, 927
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 9 cut(s) 58, 427, 528, 558, 559, 567, 696, 925, 1123
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 1 cut(s) 628
BstV1I GCAGC 5 cut(s) 491, 637, 658, 661, 1041
BstV2I GAAGAC 2 cut(s) 218, 387
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
Bsu15I ATCGAT 1 cut(s) 777
Bsu36I CCTNAGG 2 cut(s) 114, 464
BsuRI GGCC 9 cut(s) 92, 332, 462, 480, 525, 613, 934, 1004, 1158
BsuTUI ATCGAT 1 cut(s) 777
BtsCI GGATG 2 cut(s) 108, 922
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 231, 324
Cac8I GCNNGC 5 cut(s) 343, 451, 455, 628, 936
CfoI GCGC 2 cut(s) 628, 630
Cfr13I GGNCC 4 cut(s) 612, 823, 932, 1121
Cfr9I CCCGGG 1 cut(s) 559
ClaI ATCGAT 1 cut(s) 777
Csp6I GTAC 2 cut(s) 11, 220
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 5 cut(s) 47, 392, 487, 724, 874
CviQI GTAC 2 cut(s) 11, 220
DdeI CTNAG 6 cut(s) 36, 114, 270, 464, 499, 831
DpnI GATC 4 cut(s) 242, 683, 776, 1130
DpnII GATC 4 cut(s) 240, 681, 774, 1128
DraIII CACNNNGTG 1 cut(s) 772
Ecl136II GAGCTC 1 cut(s) 730
Eco130I CCWWGG 1 cut(s) 333
Eco147I AGGCCT 3 cut(s) 92, 1004, 1158
Eco24I GRGCYC 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 823, 1121
Eco53kI GAGCTC 1 cut(s) 730
Eco57I CTGAAG 1 cut(s) 986
Eco81I CCTNAGG 2 cut(s) 114, 464
Eco88I CYCGRG 3 cut(s) 97, 559, 986
Eco91I GGTNACC 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 730
EcoO109I RGGNCCY 2 cut(s) 612, 823
EcoO65I GGTNACC 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 427, 925
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 5 cut(s) 50, 395, 490, 727, 877
FalI AAGNNNNNCTT 4 cut(s) 330, 362, 334, 366
FaqI GGGAC 3 cut(s) 836, 973, 1116
FatI CATG 5 cut(s) 46, 391, 486, 723, 873
FbaI TGATCA 1 cut(s) 681
Fnu4HI GCNGC 6 cut(s) 188, 505, 651, 672, 675, 1030
FokI GGATG 2 cut(s) 95, 909
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 6 cut(s) 188, 505, 651, 672, 675, 1030
FspBI CTAG 4 cut(s) 216, 245, 263, 953
GlaI GCGC 2 cut(s) 627, 629
GluI GCNGC 6 cut(s) 188, 505, 651, 672, 675, 1030
GsaI CCCAGC 1 cut(s) 818
GsuI CTGGAG 2 cut(s) 203, 450
HaeIII GGCC 9 cut(s) 92, 332, 462, 480, 525, 613, 934, 1004, 1158
HapII CCGG 6 cut(s) 59, 529, 560, 568, 698, 1124
HhaI GCGC 2 cut(s) 628, 630
Hin1II CATG 5 cut(s) 50, 395, 490, 727, 877
Hin6I GCGC 2 cut(s) 626, 628
HinP1I GCGC 2 cut(s) 626, 628
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HinfI GANTC 3 cut(s) 423, 713, 961
HpaI GTTAAC 1 cut(s) 579
HpaII CCGG 6 cut(s) 59, 529, 560, 568, 698, 1124
HphI GGTGA 2 cut(s) 446, 674
Hpy166II GTNNAC 2 cut(s) 222, 579
Hpy188I TCNGA 6 cut(s) 54, 290, 589, 793, 834, 966
Hpy188III TCNNGA 4 cut(s) 97, 116, 143, 710
Hpy8I GTNNAC 2 cut(s) 222, 579
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 8 cut(s) 58, 103, 777, 791, 813, 836, 1079, 1133
HpyCH4III ACNGT 3 cut(s) 73, 208, 226
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 7 cut(s) 80, 158, 195, 317, 653, 864, 938
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 338, 347, 459, 1026
HpyF3I CTNAG 6 cut(s) 36, 114, 270, 464, 499, 831
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 5 cut(s) 50, 395, 490, 727, 877
HspAI GCGC 2 cut(s) 626, 628
Ksp22I TGATCA 1 cut(s) 681
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 4 cut(s) 240, 681, 774, 1128
LmnI GCTCC 4 cut(s) 55, 184, 668, 727
Lsp1109I GCAGC 5 cut(s) 491, 637, 658, 661, 1041
LweI GCATC 1 cut(s) 810
MaeI CTAG 4 cut(s) 216, 245, 263, 953
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 6 cut(s) 134, 143, 304, 434, 517, 977
MalI GATC 4 cut(s) 242, 683, 776, 1130
MbiI CCGCTC 1 cut(s) 187
MboI GATC 4 cut(s) 240, 681, 774, 1128
MboII GAAGA 5 cut(s) 223, 392, 847, 1069, 1106
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 2 cut(s) 278, 732
MluCI AATT 1 cut(s) 749
MlyI GAGTC 3 cut(s) 417, 722, 955
MmeI TCCRAC 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 1143
MseI TTAA 2 cut(s) 578, 945
MslI CAYNNNNRTG 4 cut(s) 206, 227, 854, 927
MspI CCGG 6 cut(s) 59, 529, 560, 568, 698, 1124
MspR9I CCNGG 9 cut(s) 60, 429, 530, 560, 561, 569, 698, 927, 1125
Mva1269I GAATGC 1 cut(s) 1143
MvaI CCWGG 2 cut(s) 429, 927
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 5 cut(s) 164, 338, 347, 459, 1026
NciI CCSGG 7 cut(s) 60, 530, 560, 561, 569, 698, 1125
NdeII GATC 4 cut(s) 240, 681, 774, 1128
NlaIII CATG 5 cut(s) 50, 395, 490, 727, 877
NlaIV GGNNCC 2 cut(s) 614, 824
NmeAIII GCCGAG 1 cut(s) 438
NmuCI GTSAC 4 cut(s) 143, 304, 434, 977
OliI CACNNNNGTG 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 986
PalAI GGCGCGCC 1 cut(s) 626
PauI GCGCGC 1 cut(s) 626
PceI AGGCCT 3 cut(s) 92, 1004, 1158
PctI GAATGC 1 cut(s) 1143
PdmI GAANNNNTTC 1 cut(s) 1143
PkrI GCNGC 6 cut(s) 189, 506, 652, 673, 676, 1031
PleI GAGTC 3 cut(s) 417, 721, 955
PpsI GAGTC 3 cut(s) 417, 721, 955
PpuMI RGGWCCY 1 cut(s) 823
Psp124BI GAGCTC 1 cut(s) 732
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 2 cut(s) 427, 925
PspEI GGTNACC 1 cut(s) 434
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 2 cut(s) 427, 925
PspN4I GGNNCC 2 cut(s) 614, 824
PspPI GGNCC 4 cut(s) 612, 823, 932, 1121
PspPPI RGGWCCY 1 cut(s) 823
PspXI VCTCGAGB 1 cut(s) 986
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 240
PteI GCGCGC 1 cut(s) 626
RsaI GTAC 2 cut(s) 12, 221
RsaNI GTAC 2 cut(s) 11, 220
RseI CAYNNNNRTG 4 cut(s) 206, 227, 854, 927
SacI GAGCTC 1 cut(s) 732
SaqAI TTAA 2 cut(s) 578, 945
SatI GCNGC 6 cut(s) 188, 505, 651, 672, 675, 1030
Sau3AI GATC 4 cut(s) 240, 681, 774, 1128
Sau96I GGNCC 4 cut(s) 612, 823, 932, 1121
SchI GAGTC 3 cut(s) 417, 722, 955
ScrFI CCNGG 9 cut(s) 60, 429, 530, 560, 561, 569, 698, 927, 1125
SduI GDGCHC 2 cut(s) 278, 732
SfaNI GCATC 1 cut(s) 810
SfcI CTRYAG 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 986
SgsI GGCGCGCC 1 cut(s) 626
SinI GGWCC 2 cut(s) 823, 1121
SlaI CTCGAG 1 cut(s) 986
SmaI CCCGGG 1 cut(s) 561
SmiMI CAYNNNNRTG 4 cut(s) 206, 227, 854, 927
SmlI CTYRAG 3 cut(s) 409, 890, 986
SmoI CTYRAG 3 cut(s) 409, 890, 986
Sse9I AATT 1 cut(s) 749
SseBI AGGCCT 3 cut(s) 92, 1004, 1158
SsiI CCGC 1 cut(s) 187
SspMI CTAG 4 cut(s) 216, 245, 263, 953
SstI GAGCTC 1 cut(s) 732
StuI AGGCCT 3 cut(s) 92, 1004, 1158
StyD4I CCNGG 9 cut(s) 58, 427, 528, 558, 559, 567, 696, 925, 1123
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 3 cut(s) 73, 208, 226
TaiI ACGT 1 cut(s) 477
TaqI TCGA 5 cut(s) 5, 129, 777, 987, 1153
TasI AATT 1 cut(s) 749
TatI WGTACW 1 cut(s) 10
TauI GCSGC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 578, 945
Tru9I TTAA 2 cut(s) 578, 945
TscAI CASTG 2 cut(s) 231, 324
TseFI GTSAC 4 cut(s) 143, 304, 434, 977
TseI GCWGC 5 cut(s) 504, 650, 671, 674, 1029
Tsp45I GTSAC 4 cut(s) 143, 304, 434, 977
TspDTI ATGAA 2 cut(s) 712, 911
TspMI CCCGGG 1 cut(s) 559
TspRI CASTG 2 cut(s) 231, 324
VpaK11BI GGWCC 2 cut(s) 823, 1121
XhoI CTCGAG 1 cut(s) 986
XmaI CCCGGG 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 1143
XspI CTAG 4 cut(s) 216, 245, 263, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.