Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012948

Physical Location & Seq

Genomic Coordinates Forward (+)

24568687 .. 24569749

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0178800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAGCAATCGGCAGAGCTAGTGTTTATCCCATCCCCAGGCAATGGCCACCTCGTGGCTACGGTGGAGGTCGCAAAGCTCCTCCTGTCTCGAGATGATCAACTCTTCATCACAGTCCTCGTCATAAAGTTCCCGTTCAGCATAGACGGCATCGATGCCTACGTTGAGTCCTTCGCGGACTCTTCCATATCACATCGGATCAAGTTCATCAACCTCCCACAGCAGAATATGGAGACACAAGGTAACAGCACCATCAACTTCTTGAACTTCATTGACAATCAGCAAACCAACGTTAAAGATGTTGTCGCCAAACTCATCGAGTCCGAGACCAAGACTCGACTCGCCGGGTTTGTCATCGACATGTTTTCGCCTCCACGCTTGGACGTACTCATGTTCCACCTTCAAGCACTTCGTGATGATCACAACAAGGACTGCACTGAGTTCAAGGACTCGACTGCTGATTTGGTGGTCCCGACTTACTCCAACCCCTTGCCAGCTGCTAGAATCTTACCTAGTGACTATTTCGAAAAGGAGACCGGCAACAGGATCCTCAACTTGGCCAAAAGGTTTAGAGATGTCAAGGGTATTTTGATTAATACATTCACAGAGCTGGAGTCGCATGCCCTTCTTTCTCTCAGTTCTAATGGTATGATCCCTCCGGTGTATCAGACGGGACCCATACTAAACGTGAAGAGCGATGACAACAATGACCAAGTGGATTCGAAGCAGTCAAAGCAAAAGTCTGATATCTTGAAATGGCTCGATGATCAGCCTCCATCGTCTGTAGTGTTTCTGTGCTTCGGGAGTATGGGAAGCTTCAGTGAAGACCAGGTGAAAGAGATTGCCCGCGCATTGGAGCATGCAGGGTTTCGGTTCTTGTGGTCCCTACGTCAGCCTCTACCAGAGGGAAAGATTGGAATGCCCAGCGACTATGCCGACACACCGGGGTGTTACCTGAAGGGTTTCTTGATCGAACGGCTGGGGTCGGAAAAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N PPR PPR_1 PPR_2 PPR_3

Protein Analysis

332

Amino Acids

37.19

Weight (kDa)

5.24

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02050 AT4G00040
fragaria_vesca	FvH4_7g09471
malus_domestica	MD07G1098500.v1.1
prunus_persica	Prupe.2G122600_v2.0.a1
pyrus_communis	pycom07g08120
rosa_chinensis	RchiOBHm_Chr1g0346291
rosa_laevigata	RLG00000028808
rosa_multiflora	Rmu_co8385307.1_g000001 Rmu_sc0003363.1_g000039 Rmu_sc0003809.1_g000039
rosa_roxburghii	Rroxscaffold_4G00308760
rosa_rugosa	Rorug01G0178800
rosa_samantha	Rh1AG198200 Rh1BG164300 Rh1CG183500 Rh1DG195000
rosa_wichuraiana	Rw1G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	44, 55
AccII	CGCG	2 cut(s)	176, 849
AciI	CCGC	2 cut(s)	176, 847
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	4 cut(s)	206, 541, 554, 646
AcoI	YGGCCR	2 cut(s)	46, 558
AcuI	CTGAAG	2 cut(s)	802, 977
AdeI	CACNNNGTG	2 cut(s)	55, 413
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	6 cut(s)	38, 44, 55, 543, 556, 853
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	4 cut(s)	265, 404, 445, 754
AjnI	CCWGG	2 cut(s)	37, 828
AleI	CACNNNNGTG	1 cut(s)	946
AluBI	AGCT	5 cut(s)	19, 79, 497, 610, 816
AluI	AGCT	5 cut(s)	19, 79, 497, 610, 816
Alw26I	GTCTC	4 cut(s)	93, 227, 320, 527
AlwI	GGATC	4 cut(s)	206, 541, 554, 646
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	2 cut(s)	46, 558
ApeKI	GCWGC	1 cut(s)	497
ArsI	GACNNNNNNTTYG	4 cut(s)	445, 477, 725, 757
AseI	ATTAAT	1 cut(s)	594
Asp700I	GAANNNNTTC	1 cut(s)	962
AspLEI	GCGC	1 cut(s)	851
AspS9I	GGNCC	3 cut(s)	469, 674, 882
AsuC2I	CCSGG	2 cut(s)	346, 945
AsuHPI	GGTGA	1 cut(s)	844
AsuII	TTCGAA	2 cut(s)	525, 722
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	3 cut(s)	469, 674, 882
BalI	TGGCCA	2 cut(s)	48, 560
BamHI	GGATCC	1 cut(s)	546
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	831
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	3 cut(s)	40, 260, 784
BceAI	ACGGC	2 cut(s)	163, 992
BciT130I	CCWGG	2 cut(s)	39, 830
BclI	TGATCA	3 cut(s)	97, 418, 766
BcnI	CCSGG	2 cut(s)	346, 945
BcoDI	GTCTC	4 cut(s)	93, 227, 320, 527
BfaI	CTAG	3 cut(s)	20, 501, 513
BfmI	CTRYAG	1 cut(s)	783
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	4 cut(s)	39, 346, 830, 945
Bme18I	GGWCC	3 cut(s)	469, 674, 882
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	3 cut(s)	469, 674, 882
BmiI	GGNNCC	5 cut(s)	471, 548, 675, 676, 884
BmrFI	CCNGG	4 cut(s)	39, 346, 830, 945
BmsI	GCATC	2 cut(s)	145, 159
BpiI	GAAGAC	1 cut(s)	831
BpmI	CTGGAG	1 cut(s)	632
Bpu14I	TTCGAA	2 cut(s)	525, 722
BpuMI	CCSGG	2 cut(s)	346, 945
Bsa29I	ATCGAT	1 cut(s)	153
BsaI	GGTCTC	2 cut(s)	320, 527
BsaJI	CCNNGG	2 cut(s)	37, 944
BsaWI	WCCGGW	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 44, 55, 543, 556, 853
Bse118I	RCCGGY	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	39, 830
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	37, 944
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	6 cut(s)	38, 44, 55, 543, 556, 853
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	429, 649
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	2 cut(s)	923, 979
BsgI	GTGCAG	1 cut(s)	418
Bsh1236I	CGCG	2 cut(s)	176, 849
BshFI	GGCC	2 cut(s)	48, 560
BshVI	ATCGAT	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	4 cut(s)	345, 537, 659, 944
BslFI	GGGAC	3 cut(s)	455, 687, 868
BslI	CCNNNNNNNGG	6 cut(s)	38, 44, 55, 543, 556, 853
BsmAI	GTCTC	4 cut(s)	93, 227, 320, 527
BsmFI	GGGAC	3 cut(s)	455, 687, 868
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	2 cut(s)	48, 560
Bso31I	GGTCTC	2 cut(s)	320, 527
BsoBI	CYCGRG	1 cut(s)	90
Bsp119I	TTCGAA	2 cut(s)	525, 722
Bsp143I	GATC	7 cut(s)	97, 198, 418, 546, 651, 766, 969
BspACI	CCGC	2 cut(s)	176, 847
BspANI	GGCC	2 cut(s)	48, 560
BspCNI	CTCAG	2 cut(s)	430, 648
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	2 cut(s)	176, 849
BspLI	GGNNCC	5 cut(s)	471, 548, 675, 676, 884
BspPI	GGATC	4 cut(s)	206, 541, 554, 646
BspQI	GCTCTTC	1 cut(s)	686
BspT104I	TTCGAA	2 cut(s)	525, 722
BspTNI	GGTCTC	2 cut(s)	320, 527
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	37, 944
BssMI	GATC	7 cut(s)	97, 198, 418, 546, 651, 766, 969
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	39, 830
Bst4CI	ACNGT	2 cut(s)	64, 115
Bst6I	CTCTTC	3 cut(s)	110, 187, 686
BstBI	TTCGAA	2 cut(s)	525, 722
BstC8I	GCNNGC	4 cut(s)	495, 621, 847, 861
BstDEI	CTNAG	2 cut(s)	438, 635
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	2 cut(s)	176, 849
BstHHI	GCGC	1 cut(s)	851
BstKTI	GATC	7 cut(s)	100, 201, 421, 549, 654, 769, 972
BstMAI	GTCTC	4 cut(s)	93, 227, 320, 527
BstMBI	GATC	7 cut(s)	97, 198, 418, 546, 651, 766, 969
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 616, 733
BstNI	CCWGG	2 cut(s)	39, 830
BstNSI	RCATGY	3 cut(s)	364, 623, 863
BstSCI	CCNGG	4 cut(s)	37, 344, 828, 943
BstSFI	CTRYAG	1 cut(s)	783
BstUI	CGCG	2 cut(s)	176, 849
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	831
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	48, 560
BsuTUI	ATCGAT	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	435, 826
Cac8I	GCNNGC	4 cut(s)	495, 621, 847, 861
CfoI	GCGC	1 cut(s)	851
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	3 cut(s)	469, 674, 882
ClaI	ATCGAT	1 cut(s)	153
CsiI	ACCWGGT	1 cut(s)	828
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	4 cut(s)	361, 391, 620, 860
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	2 cut(s)	438, 635
DpnI	GATC	7 cut(s)	99, 200, 420, 548, 653, 768, 971
DpnII	GATC	7 cut(s)	97, 198, 418, 546, 651, 766, 969
DraIII	CACNNNGTG	2 cut(s)	55, 413
EaeI	YGGCCR	2 cut(s)	46, 558
Eam1104I	CTCTTC	3 cut(s)	110, 187, 686
EarI	CTCTTC	3 cut(s)	110, 187, 686
Eco31I	GGTCTC	2 cut(s)	320, 527
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	3 cut(s)	469, 674, 882
Eco57I	CTGAAG	2 cut(s)	802, 977
Eco88I	CYCGRG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRII	CCWGG	2 cut(s)	37, 828
EcoRV	GATATC	1 cut(s)	748
FaeI	CATG	4 cut(s)	364, 394, 623, 863
FalI	AAGNNNNNCTT	2 cut(s)	950, 982
FaqI	GGGAC	3 cut(s)	455, 687, 868
FatI	CATG	4 cut(s)	360, 390, 619, 859
FauI	CCCGC	1 cut(s)	854
FbaI	TGATCA	3 cut(s)	97, 418, 766
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	3 cut(s)	20, 501, 513
GlaI	GCGC	1 cut(s)	850
GluI	GCNGC	1 cut(s)	498
GsaI	CCCAGC	2 cut(s)	927, 983
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	2 cut(s)	48, 560
HapII	CCGG	4 cut(s)	345, 537, 659, 944
HhaI	GCGC	1 cut(s)	851
Hin1II	CATG	4 cut(s)	364, 394, 623, 863
Hin6I	GCGC	1 cut(s)	849
HinP1I	GCGC	1 cut(s)	849
HindIII	AAGCTT	1 cut(s)	814
HinfI	GANTC	9 cut(s)	167, 179, 320, 334, 339, 449, 504, 614, 719
HpaII	CCGG	4 cut(s)	345, 537, 659, 944
HphI	GGTGA	1 cut(s)	844
Hpy188I	TCNGA	5 cut(s)	198, 325, 669, 745, 988
Hpy188III	TCNNGA	8 cut(s)	90, 92, 262, 413, 472, 751, 802, 967
HpyAV	CCTTC	4 cut(s)	181, 410, 635, 952
HpyCH4III	ACNGT	2 cut(s)	64, 115
HpyCH4IV	ACGT	5 cut(s)	162, 291, 384, 687, 889
HpyCH4V	TGCA	2 cut(s)	435, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 616, 733
HpyF3I	CTNAG	2 cut(s)	438, 635
HpySE526I	ACGT	5 cut(s)	162, 291, 384, 687, 889
Hsp92II	CATG	4 cut(s)	364, 394, 623, 863
HspAI	GCGC	1 cut(s)	849
KflI	GGGWCCC	1 cut(s)	674
Ksp22I	TGATCA	3 cut(s)	97, 418, 766
Kzo9I	GATC	7 cut(s)	97, 198, 418, 546, 651, 766, 969
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	2 cut(s)	84, 856
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	2 cut(s)	145, 159
MabI	ACCWGGT	1 cut(s)	828
MaeI	CTAG	3 cut(s)	20, 501, 513
MaeII	ACGT	5 cut(s)	162, 291, 384, 687, 889
MaeIII	GTNAC	3 cut(s)	242, 515, 950
MalI	GATC	7 cut(s)	99, 200, 420, 548, 653, 768, 971
MboI	GATC	7 cut(s)	97, 198, 418, 546, 651, 766, 969
MboII	GAAGA	4 cut(s)	97, 174, 703, 836
MflI	RGATCY	1 cut(s)	546
MlsI	TGGCCA	2 cut(s)	48, 560
MluNI	TGGCCA	2 cut(s)	48, 560
MlyI	GAGTC	7 cut(s)	173, 176, 328, 329, 333, 443, 623
MmeI	TCCRAC	2 cut(s)	507, 966
Mox20I	TGGCCA	2 cut(s)	48, 560
MroXI	GAANNNNTTC	1 cut(s)	962
MscI	TGGCCA	2 cut(s)	48, 560
MseI	TTAA	2 cut(s)	294, 594
MslI	CAYNNNNRTG	2 cut(s)	359, 946
Msp20I	TGGCCA	2 cut(s)	48, 560
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	4 cut(s)	345, 537, 659, 944
MspR9I	CCNGG	4 cut(s)	39, 346, 830, 945
Mva1269I	GAATGC	1 cut(s)	924
MvaI	CCWGG	2 cut(s)	39, 830
MvnI	CGCG	2 cut(s)	176, 849
MwoI	GCNNNNNNNGC	3 cut(s)	147, 616, 733
NciI	CCSGG	2 cut(s)	346, 945
NdeII	GATC	7 cut(s)	97, 198, 418, 546, 651, 766, 969
NlaIII	CATG	4 cut(s)	364, 394, 623, 863
NlaIV	GGNNCC	5 cut(s)	471, 548, 675, 676, 884
NmuCI	GTSAC	1 cut(s)	515
NspI	RCATGY	3 cut(s)	364, 623, 863
NspV	TTCGAA	2 cut(s)	525, 722
OliI	CACNNNNGTG	1 cut(s)	946
PaeI	GCATGC	2 cut(s)	623, 863
PaeR7I	CTCGAG	1 cut(s)	90
PciI	ACATGT	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 693
PctI	GAATGC	1 cut(s)	924
PdmI	GAANNNNTTC	1 cut(s)	962
PfeI	GAWTC	2 cut(s)	504, 719
PflMI	CCANNNNNTGG	2 cut(s)	44, 55
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	7 cut(s)	173, 175, 328, 328, 333, 443, 622
PpsI	GAGTC	7 cut(s)	173, 175, 328, 328, 333, 443, 622
PpuMI	RGGWCCY	1 cut(s)	674
PscI	ACATGT	1 cut(s)	360
PshBI	ATTAAT	1 cut(s)	594
Psp1406I	AACGTT	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	674
Psp6I	CCWGG	2 cut(s)	37, 828
PspFI	CCCAGC	2 cut(s)	923, 979
PspGI	CCWGG	2 cut(s)	37, 828
PspN4I	GGNNCC	5 cut(s)	471, 548, 675, 676, 884
PspPI	GGNCC	3 cut(s)	469, 674, 882
PspPPI	RGGWCCY	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	546
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	2 cut(s)	359, 946
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	2 cut(s)	294, 594
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	7 cut(s)	97, 198, 418, 546, 651, 766, 969
Sau96I	GGNCC	3 cut(s)	469, 674, 882
SchI	GAGTC	7 cut(s)	173, 176, 328, 329, 333, 443, 623
ScrFI	CCNGG	4 cut(s)	39, 346, 830, 945
SexAI	ACCWGGT	1 cut(s)	828
SfaNI	GCATC	2 cut(s)	145, 159
SfcI	CTRYAG	1 cut(s)	783
Sfr274I	CTCGAG	1 cut(s)	90
SfuI	TTCGAA	2 cut(s)	525, 722
SinI	GGWCC	3 cut(s)	469, 674, 882
SlaI	CTCGAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	359, 946
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SphI	GCATGC	2 cut(s)	623, 863
SsiI	CCGC	2 cut(s)	176, 847
SspMI	CTAG	3 cut(s)	20, 501, 513
StyD4I	CCNGG	4 cut(s)	37, 344, 828, 943
TaaI	ACNGT	2 cut(s)	64, 115
TaiI	ACGT	5 cut(s)	165, 294, 387, 690, 892
TfiI	GAWTC	2 cut(s)	504, 719
Tru1I	TTAA	2 cut(s)	294, 594
Tru9I	TTAA	2 cut(s)	294, 594
TscAI	CASTG	2 cut(s)	442, 826
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	4 cut(s)	17, 97, 196, 259
TspRI	CASTG	2 cut(s)	442, 826
Van91I	CCANNNNNTGG	2 cut(s)	44, 55
VpaK11BI	GGWCC	3 cut(s)	469, 674, 882
VspI	ATTAAT	1 cut(s)	594
XceI	RCATGY	3 cut(s)	364, 623, 863
XhoI	CTCGAG	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	962
XspI	CTAG	3 cut(s)	20, 501, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.