FvH4_7g09471

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
9083764 .. 9085702
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09471.t1

Sequence Viewer

Length: 1164 bp
ATGTCGAAAGTACAAGGCAATAGGAATGGTTCTGCCAAGCAACTTCATGTTCCTACACCAGGGAAGGCAACAGTTCTTGCATTGGGTAAGGCCTTCCCGAGCCAAATCATCCCTCAGGATTGCTTGGTCGAGGGCTACATTCGCGACACGAAATGTGCAGATGTTGCCATTAAGGAGAAACTAGAGCGACTCTGCAAAACCACAACTGTGAAAACCAGGTACACAGTGATGTCAAAGGAGATCCTAGACAAATATCCTGAACTAGCAACTGAGGGCACAACCACTATCAGGCAAAGGCTTGAAATCACAAACCCTGCAGTGGTAGAGATGGCTTTTGAAGCAAGCCTTGCTTGCATCAAGGAATGGGGCAGACCGGTTGAAGACATAACTCACATTGTCTATGTGTCCTCAAGTGAAATAAGACTCCCTGGAGGTGATCTTTACCTTGCCAGCAAGCTTGGCCTGAGGAACGACGTAGGTCGTGTAATGCTCTATTTCTTAGGCTGCTATGGTGGTGTCACTGGCCTCAGGGTTGCCAAAGACATAGCTGAAAACAACCCGGGAAGCCGGGTCTTGTTAACCACTTCTGAGACCACCATTCTTGGTTTCAGGCCCCCCAACAAGGCGCGTCCTTATGACCTTGTTGGGGCTGCACTTTTCGGAGATGGAGCGGCGGCTGTGATTGTTGGAAGCAACCCAGTTTGGGGCCAAGAGTCTCCTTTCATGGAGCTTAACTATGCTGTCCAACAATTCCTCCCTGATACACACAATGTGATTGATGGAAGGCTCTCTGAAGAAGGCATCAACTTCAAGCTGGGAAGGGACCTTCCTCAGAAGATTGATGAGAACATTGAAGTGTTTTGCAAGAAACTCATGGCAAAAGCTAATCTCAAGGACTTCAATGAGCTATTCTGGGCTGTTCATCCTGGTGGGCCTGCAATCCTTAACAAGCTAGAGGGGACACTGAAGCTCACAAGTGACAAGCTTGAGTGTAGCAGACAGGCTCTGATGGACTATGGCAATGTTAGCAGCAACACCATTTTCTATGTGATGGAGAAGATGAGAGATGAGTTGAGGAAGAAAGAAGGGAGTGAAGAATGGGGACTTGCATTGGCTTTTGGACCTGGGATTACATTTGAAGGCATTCTACTTCGCAGCCTCTGA

Protein Analysis

388

Amino Acids

42.67

Weight (kDa)

6.92

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 19 - 233 1.8e-107 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C PF02797 243 - 387 1e-65 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012948)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 671
AccII CGCG 2 cut(s) 144, 628
AciI CCGC 2 cut(s) 671, 674
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 2 cut(s) 813, 986
AdeI CACNNNGTG 1 cut(s) 772
AfaI GTAC 2 cut(s) 12, 221
AfiI CCNNNNNNNGG 7 cut(s) 59, 288, 319, 622, 646, 703, 704
AgeI ACCGGT 1 cut(s) 373
AgsI TTSAA 7 cut(s) 302, 338, 380, 811, 854, 901, 1139
AjnI CCWGG 5 cut(s) 58, 215, 427, 925, 1123
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 9 cut(s) 457, 548, 730, 814, 884, 907, 952, 970, 985
AluI AGCT 9 cut(s) 457, 548, 730, 814, 884, 907, 952, 970, 985
Alw26I GTCTC 2 cut(s) 584, 720
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 2 cut(s) 1006, 1161
Ama87I CYCGRG 2 cut(s) 97, 559
AoxI GGCC 6 cut(s) 90, 460, 523, 611, 706, 932
ApeKI GCWGC 4 cut(s) 504, 650, 1029, 1155
AsiGI ACCGGT 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 1143
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 5 cut(s) 612, 706, 823, 932, 1121
AsuC2I CCSGG 3 cut(s) 560, 561, 569
AsuHPI GGTGA 1 cut(s) 446
AvaI CYCGRG 2 cut(s) 97, 559
AvaII GGWCC 2 cut(s) 823, 1121
AxyI CCTNAGG 3 cut(s) 114, 464, 527
BaeGI GKGCMC 1 cut(s) 278
BarI GAAGNNNNNNTAC 2 cut(s) 1131, 1163
BbsI GAAGAC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 491, 637, 1041
BccI CCATC 5 cut(s) 322, 659, 773, 1003, 1045
BciT130I CCWGG 5 cut(s) 60, 217, 429, 927, 1125
BcnI CCSGG 3 cut(s) 560, 561, 569
BcoDI GTCTC 2 cut(s) 584, 720
BfaI CTAG 4 cut(s) 182, 245, 263, 953
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 6 cut(s) 505, 651, 672, 675, 1030, 1156
BlsI GCNGC 6 cut(s) 506, 652, 673, 676, 1031, 1157
Bme1390I CCNGG 8 cut(s) 60, 217, 429, 560, 561, 569, 927, 1125
Bme18I GGWCC 2 cut(s) 823, 1121
BmeT110I CYCGRG 2 cut(s) 97, 559
BmgT120I GGNCC 5 cut(s) 612, 706, 823, 932, 1121
BmiI GGNNCC 3 cut(s) 614, 707, 824
BmrFI CCNGG 8 cut(s) 60, 217, 429, 560, 561, 569, 927, 1125
BmrI ACTGGG 1 cut(s) 692
BmsI GCATC 2 cut(s) 363, 810
BmuI ACTGGG 1 cut(s) 692
BoxI GACNNNNGTC 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 3 cut(s) 394, 875, 1007
BpuMI CCSGG 3 cut(s) 560, 561, 569
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 4 cut(s) 59, 427, 559, 1124
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 7 cut(s) 59, 288, 319, 622, 646, 703, 704
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 2 cut(s) 526, 698
Bse21I CCTNAGG 3 cut(s) 114, 464, 527
Bse3DI GCAATG 1 cut(s) 1027
BseBI CCWGG 5 cut(s) 60, 217, 429, 927, 1125
BseDI CCNNGG 4 cut(s) 59, 427, 559, 1124
BseGI GGATG 2 cut(s) 108, 922
BseLI CCNNNNNNNGG 7 cut(s) 59, 288, 319, 622, 646, 703, 704
BseMI GCAATG 1 cut(s) 1027
BseMII CTCAG 6 cut(s) 128, 261, 455, 541, 579, 845
BseNI ACTGG 2 cut(s) 526, 698
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 3 cut(s) 491, 637, 1041
BseYI CCCAGC 1 cut(s) 814
BsgI GTGCAG 2 cut(s) 177, 636
Bsh1236I CGCG 2 cut(s) 144, 628
BshFI GGCC 6 cut(s) 92, 462, 525, 613, 708, 934
BshTI ACCGGT 1 cut(s) 373
BsiHKCI CYCGRG 2 cut(s) 97, 559
BsiSI CCGG 3 cut(s) 374, 560, 568
BslFI GGGAC 3 cut(s) 836, 973, 1116
BslI CCNNNNNNNGG 7 cut(s) 59, 288, 319, 622, 646, 703, 704
BsmAI GTCTC 2 cut(s) 584, 720
BsmFI GGGAC 3 cut(s) 836, 973, 1116
BsmI GAATGC 1 cut(s) 1143
BsnI GGCC 6 cut(s) 92, 462, 525, 613, 708, 934
Bso31I GGTCTC 1 cut(s) 584
BsoBI CYCGRG 2 cut(s) 97, 559
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 240, 436
Bsp68I TCGCGA 1 cut(s) 144
BspACI CCGC 2 cut(s) 671, 674
BspANI GGCC 6 cut(s) 92, 462, 525, 613, 708, 934
BspCNI CTCAG 6 cut(s) 127, 262, 456, 540, 580, 844
BspFNI CGCG 2 cut(s) 144, 628
BspLI GGNNCC 3 cut(s) 614, 707, 824
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 671
BsrDI GCAATG 1 cut(s) 1027
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 2 cut(s) 526, 698
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 4 cut(s) 59, 427, 559, 1124
BssMI GATC 2 cut(s) 240, 436
Bst2UI CCWGG 5 cut(s) 60, 217, 429, 927, 1125
Bst4CI ACNGT 3 cut(s) 73, 208, 226
BstAPI GCANNNNNTGC 2 cut(s) 164, 347
BstC8I GCNNGC 5 cut(s) 343, 352, 451, 455, 936
BstDEI CTNAG 7 cut(s) 114, 270, 464, 499, 527, 588, 831
BstENI CCTNNNNNAGG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 108, 922
BstFNI CGCG 2 cut(s) 144, 628
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 2 cut(s) 243, 439
BstMAI GTCTC 2 cut(s) 584, 720
BstMBI GATC 2 cut(s) 240, 436
BstMWI GCNNNNNNNGC 7 cut(s) 141, 164, 338, 347, 351, 459, 1026
BstNI CCWGG 5 cut(s) 60, 217, 429, 927, 1125
BstPAI GACNNNNGTC 1 cut(s) 477
BstSCI CCNGG 8 cut(s) 58, 215, 427, 558, 559, 567, 925, 1123
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 2 cut(s) 144, 628
BstV1I GCAGC 3 cut(s) 491, 637, 1041
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
Bsu36I CCTNAGG 3 cut(s) 114, 464, 527
BsuRI GGCC 6 cut(s) 92, 462, 525, 613, 708, 934
BtsCI GGATG 2 cut(s) 108, 922
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 4 cut(s) 231, 324, 519, 962
BtuMI TCGCGA 1 cut(s) 144
Cac8I GCNNGC 5 cut(s) 343, 352, 451, 455, 936
CaiI CAGNNNCTG 2 cut(s) 1006, 1161
CfoI GCGC 1 cut(s) 628
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 5 cut(s) 612, 706, 823, 932, 1121
Cfr9I CCCGGG 1 cut(s) 559
CseI GACGC 1 cut(s) 617
CsiI ACCWGGT 1 cut(s) 215
Csp6I GTAC 2 cut(s) 11, 220
CspAI ACCGGT 1 cut(s) 373
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 3 cut(s) 47, 724, 874
CviQI GTAC 2 cut(s) 11, 220
DdeI CTNAG 7 cut(s) 114, 270, 464, 499, 527, 588, 831
DpnI GATC 2 cut(s) 242, 438
DpnII GATC 2 cut(s) 240, 436
DraIII CACNNNGTG 1 cut(s) 772
Eco147I AGGCCT 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 2 cut(s) 823, 1121
Eco57I CTGAAG 2 cut(s) 813, 986
Eco81I CCTNAGG 3 cut(s) 114, 464, 527
Eco88I CYCGRG 2 cut(s) 97, 559
EcoNI CCTNNNNNAGG 1 cut(s) 57
EcoO109I RGGNCCY 2 cut(s) 612, 823
EcoRII CCWGG 5 cut(s) 58, 215, 427, 925, 1123
FaeI CATG 3 cut(s) 50, 727, 877
FalI AAGNNNNNCTT 4 cut(s) 330, 362, 334, 366
FaqI GGGAC 3 cut(s) 836, 973, 1116
FatI CATG 3 cut(s) 46, 723, 873
Fnu4HI GCNGC 6 cut(s) 505, 651, 672, 675, 1030, 1156
FokI GGATG 2 cut(s) 95, 909
Fsp4HI GCNGC 6 cut(s) 505, 651, 672, 675, 1030, 1156
FspBI CTAG 4 cut(s) 182, 245, 263, 953
GlaI GCGC 1 cut(s) 627
GluI GCNGC 6 cut(s) 505, 651, 672, 675, 1030, 1156
GsaI CCCAGC 1 cut(s) 818
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 6 cut(s) 92, 462, 525, 613, 708, 934
HapII CCGG 3 cut(s) 374, 560, 568
HgaI GACGC 1 cut(s) 617
HhaI GCGC 1 cut(s) 628
Hin1II CATG 3 cut(s) 50, 727, 877
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HindIII AAGCTT 2 cut(s) 455, 983
HinfI GANTC 3 cut(s) 189, 423, 713
HpaI GTTAAC 1 cut(s) 579
HpaII CCGG 3 cut(s) 374, 560, 568
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 2 cut(s) 222, 579
Hpy188I TCNGA 6 cut(s) 589, 662, 793, 834, 1008, 1163
Hpy188III TCNNGA 4 cut(s) 97, 116, 143, 257
Hpy8I GTNNAC 2 cut(s) 222, 579
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 8 cut(s) 58, 103, 777, 791, 813, 836, 1079, 1133
HpyCH4III ACNGT 3 cut(s) 73, 208, 226
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 9 cut(s) 80, 158, 195, 317, 354, 653, 864, 938, 1109
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 164, 338, 347, 351, 459, 1026
HpyF3I CTNAG 7 cut(s) 114, 270, 464, 499, 527, 588, 831
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 3 cut(s) 50, 727, 877
HspAI GCGC 1 cut(s) 626
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 2 cut(s) 240, 436
LmnI GCTCC 2 cut(s) 668, 727
Lsp1109I GCAGC 3 cut(s) 491, 637, 1041
LweI GCATC 2 cut(s) 363, 810
MabI ACCWGGT 1 cut(s) 215
MaeI CTAG 4 cut(s) 182, 245, 263, 953
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 2 cut(s) 517, 977
MalI GATC 2 cut(s) 242, 438
MbiI CCGCTC 1 cut(s) 671
MboI GATC 2 cut(s) 240, 436
MboII GAAGA 6 cut(s) 392, 806, 847, 1069, 1090, 1106
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 1 cut(s) 749
MlyI GAGTC 3 cut(s) 183, 417, 722
MmeI TCCRAC 2 cut(s) 667, 769
MroXI GAANNNNTTC 1 cut(s) 1143
MseI TTAA 4 cut(s) 171, 578, 732, 945
MslI CAYNNNNRTG 4 cut(s) 206, 227, 854, 927
MspI CCGG 3 cut(s) 374, 560, 568
MspR9I CCNGG 8 cut(s) 60, 217, 429, 560, 561, 569, 927, 1125
Mva1269I GAATGC 1 cut(s) 1143
MvaI CCWGG 5 cut(s) 60, 217, 429, 927, 1125
MvnI CGCG 2 cut(s) 144, 628
MwoI GCNNNNNNNGC 7 cut(s) 141, 164, 338, 347, 351, 459, 1026
NciI CCSGG 3 cut(s) 560, 561, 569
NdeII GATC 2 cut(s) 240, 436
NlaIII CATG 3 cut(s) 50, 727, 877
NlaIV GGNNCC 3 cut(s) 614, 707, 824
NmuCI GTSAC 2 cut(s) 517, 977
NruI TCGCGA 1 cut(s) 144
OliI CACNNNNGTG 1 cut(s) 206
PceI AGGCCT 1 cut(s) 92
PctI GAATGC 1 cut(s) 1143
PdmI GAANNNNTTC 1 cut(s) 1143
PinAI ACCGGT 1 cut(s) 373
PkrI GCNGC 6 cut(s) 506, 652, 673, 676, 1031, 1157
PleI GAGTC 3 cut(s) 183, 417, 721
PpsI GAGTC 3 cut(s) 183, 417, 721
PpuMI RGGWCCY 1 cut(s) 823
PshAI GACNNNNGTC 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 5 cut(s) 58, 215, 427, 925, 1123
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 5 cut(s) 58, 215, 427, 925, 1123
PspN4I GGNNCC 3 cut(s) 614, 707, 824
PspPI GGNCC 5 cut(s) 612, 706, 823, 932, 1121
PspPPI RGGWCCY 1 cut(s) 823
PstI CTGCAG 1 cut(s) 319
PstNI CAGNNNCTG 2 cut(s) 1006, 1161
PsuI RGATCY 1 cut(s) 240
RruI TCGCGA 1 cut(s) 144
RsaI GTAC 2 cut(s) 12, 221
RsaNI GTAC 2 cut(s) 11, 220
RseI CAYNNNNRTG 4 cut(s) 206, 227, 854, 927
SaqAI TTAA 4 cut(s) 171, 578, 732, 945
SatI GCNGC 6 cut(s) 505, 651, 672, 675, 1030, 1156
Sau3AI GATC 2 cut(s) 240, 436
Sau96I GGNCC 5 cut(s) 612, 706, 823, 932, 1121
SchI GAGTC 3 cut(s) 183, 417, 722
ScrFI CCNGG 8 cut(s) 60, 217, 429, 560, 561, 569, 927, 1125
SduI GDGCHC 1 cut(s) 278
SexAI ACCWGGT 1 cut(s) 215
SfaNI GCATC 2 cut(s) 363, 810
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 2 cut(s) 823, 1121
SmaI CCCGGG 1 cut(s) 561
SmiMI CAYNNNNRTG 4 cut(s) 206, 227, 854, 927
SmlI CTYRAG 3 cut(s) 409, 890, 986
SmoI CTYRAG 3 cut(s) 409, 890, 986
Sse9I AATT 1 cut(s) 749
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 2 cut(s) 671, 674
SspMI CTAG 4 cut(s) 182, 245, 263, 953
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 8 cut(s) 58, 215, 427, 558, 559, 567, 925, 1123
TaaI ACNGT 3 cut(s) 73, 208, 226
TaiI ACGT 1 cut(s) 477
TaqI TCGA 2 cut(s) 5, 129
TasI AATT 1 cut(s) 749
TatI WGTACW 1 cut(s) 10
TauI GCSGC 2 cut(s) 674, 677
Tru1I TTAA 4 cut(s) 171, 578, 732, 945
Tru9I TTAA 4 cut(s) 171, 578, 732, 945
TscAI CASTG 4 cut(s) 231, 324, 526, 969
TseFI GTSAC 2 cut(s) 517, 977
TseI GCWGC 4 cut(s) 504, 650, 1029, 1155
Tsp45I GTSAC 2 cut(s) 517, 977
TspDTI ATGAA 3 cut(s) 35, 712, 911
TspMI CCCGGG 1 cut(s) 559
TspRI CASTG 4 cut(s) 231, 324, 526, 969
VpaK11BI GGWCC 2 cut(s) 823, 1121
XagI CCTNNNNNAGG 1 cut(s) 57
XmaI CCCGGG 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 1143
XspI CTAG 4 cut(s) 182, 245, 263, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.