AT4G00040

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012948
Physical Location & Seq
Forward (+)
14627 .. 16079
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00040.1

Sequence Viewer

Length: 1158 bp
ATGTTGGTGTCCGCAAGGGTAGAGAAACAAAAGCGTGTTGCTTATCAGGGGAAGGCGACAGTGCTTGCTCTCGGTAAGGCCTTGCCGAGCAATGTTGTTTCCCAGGAGAATCTCGTGGAGGAGTATCTCCGTGAAATCAAATGCGATAACCTTTCTATCAAAGACAAGCTGCAACACTTGTGCAAAAGCACAACTGTCAAGACACGCTACACAGTCATGTCACGGGAGACGCTGCACAAATACCCTGAACTAGCAACCGAGGGTTCCCCAACCATCAAACAGAGGCTTGAGATTGCAAACGATGCGGTTGTGCAGATGGCATATGAAGCGAGCTTGGTTTGCATCAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATCTTGTCTACGTTTCCTCCAGTGAGTTCCGTTTGCCCGGAGGTGATCTTTACCTCTCGGCACAGCTGGGCCTTAGCAACGAGGTTCAGAGAGTGATGCTGTATTTTCTTGGATGCTATGGAGGTTTGAGTGGGCTGCGCGTGGCCAAAGACATTGCTGAGAACAACCCAGGGAGCCGTGTGTTGCTCACCACCTCTGAGACTACCGTTCTGGGGTTCCGCCCACCCAACAAAGCTCGTCCTTACAACTTAGTCGGGGCTGCACTCTTTGGAGATGGAGCAGCTGCCCTGATCATCGGAGCAGACCCTACAGAGTCGGAATCTCCTTTCATGGAGCTTCACTGTGCTATGCAGCAGTTCCTGCCCCAAACACAGGGGGTGATCGACGGGCGGCTGTCAGAAGAGGGCATAACCTTCAAGCTAGGAAGAGACCTCCCTCAGAAGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTAGTGGCAAAGGCTGGCTCTGGTGCGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCTGGTGGACCAGCCATCCTGAGCGGGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGAATGCAGCAGAAGGGCGTTGATGGATTATGGGAACGTAAGCAGCAACACCATCTTCTACATAATGGACAAAGTCAGAGATGAGCTTGAGAAGAAAGGCACAGAGGGAGAAGAGTGGGGTCTGGGCTTAGCTTTCGGACCGGGAATCACTTTCGAAGGCTTTCTCATGAGGAACCTCTAA

Protein Analysis

385

Amino Acids

42.41

Weight (kDa)

5.9

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 9 - 229 2.2e-104 Chalcone and stilbene synthases, N-terminal domain
ACP_syn_III PF08545 164 - 241 5.9e-06 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Chal_sti_synt_C PF02797 238 - 384 1e-68 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012948)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02050 AT4G00040
fragaria_vesca FvH4_7g09471
malus_domestica MD07G1098500.v1.1
prunus_persica Prupe.2G122600_v2.0.a1
pyrus_communis pycom07g08120
rosa_chinensis RchiOBHm_Chr1g0346291
rosa_laevigata RLG00000028808
rosa_multiflora Rmu_co8385307.1_g000001 Rmu_sc0003363.1_g000039 Rmu_sc0003809.1_g000039
rosa_roxburghii Rroxscaffold_4G00308760
rosa_rugosa Rorug01G0178800
rosa_samantha Rh1AG198200 Rh1BG164300 Rh1CG183500 Rh1DG195000
rosa_wichuraiana Rw1G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 939
AccI GTMKAC 1 cut(s) 387
AccII CGCG 1 cut(s) 519
AciI CCGC 5 cut(s) 12, 305, 598, 769, 939
AcoI YGGCCR 1 cut(s) 522
AcuI CTGAAG 2 cut(s) 977, 983
AfiI CCNNNNNNNGG 3 cut(s) 591, 751, 904
AgsI TTSAA 2 cut(s) 796, 892
AjnI CCWGG 3 cut(s) 102, 547, 916
Alw26I GTCTC 4 cut(s) 221, 572, 801, 941
AlwNI CAGNNNCTG 1 cut(s) 739
AoxI GGCC 3 cut(s) 78, 448, 522
ApeKI GCWGC 9 cut(s) 169, 232, 514, 638, 659, 662, 730, 984, 1020
Asp700I GAANNNNTTC 1 cut(s) 1137
AspLEI GCGC 1 cut(s) 519
AspS9I GGNCC 3 cut(s) 448, 923, 1115
AsuC2I CCSGG 2 cut(s) 417, 1119
AsuHPI GGTGA 3 cut(s) 434, 559, 769
AsuII TTCGAA 1 cut(s) 1131
AvaII GGWCC 2 cut(s) 923, 1115
BalI TGGCCA 1 cut(s) 524
BauI CACGAG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 834
BbvI GCAGC 9 cut(s) 156, 219, 501, 625, 649, 671, 742, 996, 1032
BccI CCATC 6 cut(s) 281, 310, 647, 938, 994, 1037
BceAI ACGGC 1 cut(s) 540
BciT130I CCWGG 3 cut(s) 104, 549, 918
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 2 cut(s) 417, 1119
BcoDI GTCTC 4 cut(s) 221, 572, 801, 941
BfaI CTAG 3 cut(s) 251, 800, 857
BfmI CTRYAG 1 cut(s) 687
BlpI GCTNAGC 1 cut(s) 1105
Bme1390I CCNGG 5 cut(s) 104, 417, 549, 918, 1119
Bme18I GGWCC 2 cut(s) 923, 1115
BmgT120I GGNCC 3 cut(s) 448, 923, 1115
BmiI GGNNCC 4 cut(s) 265, 554, 596, 1151
BmrFI CCNGG 5 cut(s) 104, 417, 549, 918, 1119
BmsI GCATC 4 cut(s) 292, 351, 465, 482
BpiI GAAGAC 1 cut(s) 834
BpmI CTGGAG 2 cut(s) 382, 965
Bpu10I CCTNAGC 2 cut(s) 452, 935
Bpu1102I GCTNAGC 1 cut(s) 1105
Bpu14I TTCGAA 1 cut(s) 1131
BpuEI CTTGAG 2 cut(s) 308, 1085
BpuMI CCSGG 2 cut(s) 417, 1119
BsaI GGTCTC 1 cut(s) 801
BsaJI CCNNGG 4 cut(s) 102, 258, 547, 548
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 3 cut(s) 591, 751, 904
Bse1I ACTGG 1 cut(s) 399
Bse3DI GCAATG 2 cut(s) 97, 531
BseBI CCWGG 3 cut(s) 104, 549, 918
BseDI CCNNGG 4 cut(s) 102, 258, 547, 548
BseGI GGATG 3 cut(s) 497, 913, 930
BseLI CCNNNNNNNGG 3 cut(s) 591, 751, 904
BseMI GCAATG 2 cut(s) 97, 531
BseMII CTCAG 4 cut(s) 528, 567, 830, 926
BseNI ACTGG 1 cut(s) 399
BseRI GAGGAG 2 cut(s) 134, 854
BseXI GCAGC 9 cut(s) 156, 219, 501, 625, 649, 671, 742, 996, 1032
BseYI CCCAGC 1 cut(s) 445
BsgI GTGCAG 3 cut(s) 218, 332, 624
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 3 cut(s) 80, 450, 524
BsiSI CCGG 3 cut(s) 417, 968, 1118
BslI CCNNNNNNNGG 3 cut(s) 591, 751, 904
BsmAI GTCTC 4 cut(s) 221, 572, 801, 941
BsmBI CGTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 986
BsnI GGCC 3 cut(s) 80, 450, 524
Bso31I GGTCTC 1 cut(s) 801
Bsp119I TTCGAA 1 cut(s) 1131
Bsp143I GATC 4 cut(s) 424, 669, 759, 822
Bsp1720I GCTNAGC 1 cut(s) 1105
BspACI CCGC 5 cut(s) 12, 305, 598, 769, 939
BspANI GGCC 3 cut(s) 80, 450, 524
BspCNI CTCAG 4 cut(s) 529, 568, 829, 927
BspFNI CGCG 1 cut(s) 519
BspHI TCATGA 1 cut(s) 1143
BspLI GGNNCC 4 cut(s) 265, 554, 596, 1151
BspT104I TTCGAA 1 cut(s) 1131
BspTNI GGTCTC 1 cut(s) 801
BsrBI CCGCTC 1 cut(s) 939
BsrDI GCAATG 2 cut(s) 97, 531
BsrI ACTGG 1 cut(s) 399
BssECI CCNNGG 4 cut(s) 102, 258, 547, 548
BssMI GATC 4 cut(s) 424, 669, 759, 822
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 3 cut(s) 104, 549, 918
Bst4CI ACNGT 5 cut(s) 61, 196, 214, 586, 722
Bst6I CTCTTC 3 cut(s) 774, 799, 1083
BstAPI GCANNNNNTGC 2 cut(s) 302, 739
BstBI TTCGAA 1 cut(s) 1131
BstC8I GCNNGC 4 cut(s) 66, 331, 871, 941
BstDEI CTNAG 7 cut(s) 452, 537, 576, 628, 816, 935, 1105
BstF5I GGATG 3 cut(s) 497, 913, 930
BstFNI CGCG 1 cut(s) 519
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 4 cut(s) 427, 672, 762, 825
BstMAI GTCTC 4 cut(s) 221, 572, 801, 941
BstMBI GATC 4 cut(s) 424, 669, 759, 822
BstMWI GCNNNNNNNGC 5 cut(s) 302, 326, 339, 739, 973
BstNI CCWGG 3 cut(s) 104, 549, 918
BstSCI CCNGG 5 cut(s) 102, 415, 547, 916, 1117
BstSFI CTRYAG 1 cut(s) 687
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 9 cut(s) 156, 219, 501, 625, 649, 671, 742, 996, 1032
BstV2I GAAGAC 1 cut(s) 834
BsuRI GGCC 3 cut(s) 80, 450, 524
BtsCI GGATG 3 cut(s) 497, 913, 930
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 4 cut(s) 66, 369, 406, 718
Cac8I GCNNGC 4 cut(s) 66, 331, 871, 941
CaiI CAGNNNCTG 1 cut(s) 739
CciI TCATGA 1 cut(s) 1143
CfoI GCGC 1 cut(s) 519
Cfr13I GGNCC 3 cut(s) 448, 923, 1115
CpoI CGGWCCG 1 cut(s) 1115
CseI GACGC 1 cut(s) 238
CspI CGGWCCG 1 cut(s) 1115
CviAII CATG 3 cut(s) 217, 709, 1144
DdeI CTNAG 7 cut(s) 452, 537, 576, 628, 816, 935, 1105
DpnI GATC 4 cut(s) 426, 671, 761, 824
DpnII GATC 4 cut(s) 424, 669, 759, 822
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 3 cut(s) 774, 799, 1083
EarI CTCTTC 3 cut(s) 774, 799, 1083
EciI GGCGGA 1 cut(s) 587
Eco147I AGGCCT 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 801
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 923, 1115
Eco57I CTGAAG 2 cut(s) 977, 983
EcoRII CCWGG 3 cut(s) 102, 547, 916
EcoRV GATATC 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 3 cut(s) 220, 712, 1147
FatI CATG 3 cut(s) 216, 708, 1143
FauI CCCGC 1 cut(s) 932
FauNDI CATATG 1 cut(s) 322
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 387
FokI GGATG 3 cut(s) 504, 900, 917
FspBI CTAG 3 cut(s) 251, 800, 857
GlaI GCGC 1 cut(s) 518
GsaI CCCAGC 1 cut(s) 449
GsuI CTGGAG 2 cut(s) 382, 965
HaeIII GGCC 3 cut(s) 80, 450, 524
HapII CCGG 3 cut(s) 417, 968, 1118
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 519
Hin1II CATG 3 cut(s) 220, 712, 1147
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HinfI GANTC 4 cut(s) 109, 692, 698, 1122
HpaII CCGG 3 cut(s) 417, 968, 1118
HphI GGTGA 3 cut(s) 434, 559, 769
Hpy166II GTNNAC 2 cut(s) 388, 923
Hpy188I TCNGA 8 cut(s) 468, 577, 677, 697, 778, 819, 1055, 1115
Hpy188III TCNNGA 3 cut(s) 199, 934, 1144
Hpy8I GTNNAC 2 cut(s) 388, 923
Hpy99I CGWCG 1 cut(s) 767
HpyAV CCTTC 5 cut(s) 46, 351, 802, 984, 1127
HpyCH4III ACNGT 5 cut(s) 61, 196, 214, 586, 722
HpyCH4IV ACGT 3 cut(s) 390, 834, 1014
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 326, 339, 739, 973
HpyF3I CTNAG 7 cut(s) 452, 537, 576, 628, 816, 935, 1105
HpySE526I ACGT 3 cut(s) 390, 834, 1014
Hsp92II CATG 3 cut(s) 220, 712, 1147
HspAI GCGC 1 cut(s) 517
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 4 cut(s) 424, 669, 759, 822
LmnI GCTCC 4 cut(s) 552, 656, 677, 712
Lsp1109I GCAGC 9 cut(s) 156, 219, 501, 625, 649, 671, 742, 996, 1032
LweI GCATC 4 cut(s) 292, 351, 465, 482
MaeI CTAG 3 cut(s) 251, 800, 857
MaeII ACGT 3 cut(s) 390, 834, 1014
MaeIII GTNAC 1 cut(s) 219
MalI GATC 4 cut(s) 426, 671, 761, 824
MbiI CCGCTC 1 cut(s) 939
MboI GATC 4 cut(s) 424, 669, 759, 822
MboII GAAGA 8 cut(s) 380, 791, 816, 832, 839, 1024, 1081, 1100
MlsI TGGCCA 1 cut(s) 524
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 2 cut(s) 675, 864
Mox20I TGGCCA 1 cut(s) 524
MroXI GAANNNNTTC 1 cut(s) 1137
MscI TGGCCA 1 cut(s) 524
MslI CAYNNNNRTG 2 cut(s) 215, 918
Msp20I TGGCCA 1 cut(s) 524
MspA1I CMGCKG 2 cut(s) 445, 662
MspI CCGG 3 cut(s) 417, 968, 1118
MspR9I CCNGG 5 cut(s) 104, 417, 549, 918, 1119
Mva1269I GAATGC 1 cut(s) 986
MvaI CCWGG 3 cut(s) 104, 549, 918
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 5 cut(s) 302, 326, 339, 739, 973
NciI CCSGG 2 cut(s) 417, 1119
NdeI CATATG 1 cut(s) 322
NdeII GATC 4 cut(s) 424, 669, 759, 822
NlaIII CATG 3 cut(s) 220, 712, 1147
NlaIV GGNNCC 4 cut(s) 265, 554, 596, 1151
NmeAIII GCCGAG 2 cut(s) 111, 416
NmuCI GTSAC 1 cut(s) 219
NspV TTCGAA 1 cut(s) 1131
PagI TCATGA 1 cut(s) 1143
PasI CCCWGGG 1 cut(s) 548
PceI AGGCCT 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 831
PctI GAATGC 1 cut(s) 986
PdmI GAANNNNTTC 1 cut(s) 1137
PfeI GAWTC 3 cut(s) 109, 698, 1122
PflFI GACNNNGTC 1 cut(s) 1049
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
Psp6I CCWGG 3 cut(s) 102, 547, 916
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 3 cut(s) 102, 547, 916
PspN4I GGNNCC 4 cut(s) 265, 554, 596, 1151
PspPI GGNCC 3 cut(s) 448, 923, 1115
PstNI CAGNNNCTG 1 cut(s) 739
PsyI GACNNNGTC 1 cut(s) 1049
PvuII CAGCTG 2 cut(s) 445, 662
RseI CAYNNNNRTG 2 cut(s) 215, 918
Rsr2I CGGWCCG 1 cut(s) 1115
RsrII CGGWCCG 1 cut(s) 1115
Sau3AI GATC 4 cut(s) 424, 669, 759, 822
Sau96I GGNCC 3 cut(s) 448, 923, 1115
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 5 cut(s) 104, 417, 549, 918, 1119
SfaNI GCATC 4 cut(s) 292, 351, 465, 482
SfcI CTRYAG 1 cut(s) 687
SfuI TTCGAA 1 cut(s) 1131
SinI GGWCC 2 cut(s) 923, 1115
SmiMI CAYNNNNRTG 2 cut(s) 215, 918
SmlI CTYRAG 2 cut(s) 287, 1064
SmoI CTYRAG 2 cut(s) 287, 1064
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 5 cut(s) 12, 305, 598, 769, 939
SspMI CTAG 3 cut(s) 251, 800, 857
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 5 cut(s) 102, 415, 547, 916, 1117
TaaI ACNGT 5 cut(s) 61, 196, 214, 586, 722
TaiI ACGT 3 cut(s) 393, 837, 1017
TaqI TCGA 3 cut(s) 762, 825, 1131
TauI GCSGC 1 cut(s) 772
TfiI GAWTC 3 cut(s) 109, 698, 1122
TscAI CASTG 4 cut(s) 66, 369, 406, 725
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 9 cut(s) 169, 232, 514, 638, 659, 662, 730, 984, 1020
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 3 cut(s) 339, 697, 902
TspGWI ACGGA 2 cut(s) 119, 398
TspRI CASTG 4 cut(s) 66, 369, 406, 725
Tth111I GACNNNGTC 1 cut(s) 1049
VpaK11BI GGWCC 2 cut(s) 923, 1115
XmiI GTMKAC 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 1137
XspI CTAG 3 cut(s) 251, 800, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.