AT1G02160

Cytochrome c oxidase-assembly factor COX23

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016127
Physical Location & Seq
Forward (+)
410744 .. 411632
889 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02160.1

Sequence Viewer

Length: 216 bp
ATGTCGACGAAAGGCGCGGCGGCGGCGTACCCTAGCGCGGCTCGGATATCTGATTCTCCATGTTATCTTCAGTACTCTGCTTCTCTCAAATGTCTTGAAGAATTTGGATCAGACAAGAGTAAATGCCAGGATCATTTTGATGTGTACAAGGAATGCAAGAAGAAAGAGAGGGAAGCTCGACTGGAACGCAATAAGACACGGTCGTTGTTCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHCH

Protein Analysis

71

Amino Acids

8.06

Weight (kDa)

8.96

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 21 - 55 3.8e-08 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02160 AT1G02160
fragaria_vesca FvH4_7g09140
malus_domestica MD02G1221100.v1.1 MD07G1096500.v1.1
prunus_persica Prupe.2G120100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345181
rosa_multiflora Rmu_sc0008520.1_g000006
rosa_roxburghii Rroxscaffold_4G00309200
rosa_rugosa Rorug01G0176300
rosa_samantha Rh1AG194300 Rh1BG160800 Rh1CG179100 Rh1DG191100
rosa_wichuraiana Rw1G016010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 17, 38
AciI CCGC 4 cut(s) 17, 20, 23, 38
AclWI GGATC 2 cut(s) 115, 138
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 3 cut(s) 29, 74, 146
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AlwI GGATC 2 cut(s) 115, 138
ApoI RAATTY 1 cut(s) 101
AspLEI GCGC 2 cut(s) 17, 38
BauI CACGAG 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 128
BfaI CTAG 1 cut(s) 33
BisI GCNGC 4 cut(s) 18, 21, 24, 39
BlsI GCNGC 4 cut(s) 19, 22, 25, 40
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 160, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 186
Bsh1236I CGCG 2 cut(s) 17, 38
Bsh1285I CGRYCG 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 37
BsmI GAATGC 1 cut(s) 158
Bsp1407I TGTACA 1 cut(s) 144
Bsp143I GATC 2 cut(s) 107, 130
BspACI CCGC 4 cut(s) 17, 20, 23, 38
BspFNI CGCG 2 cut(s) 17, 38
BspPI GGATC 2 cut(s) 115, 138
BsrGI TGTACA 1 cut(s) 144
BsrI ACTGG 1 cut(s) 186
BssMI GATC 2 cut(s) 107, 130
BssSI CACGAG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 201
BstAUI TGTACA 1 cut(s) 144
BstFNI CGCG 2 cut(s) 17, 38
BstHHI GCGC 2 cut(s) 17, 38
BstKTI GATC 2 cut(s) 110, 133
BstMBI GATC 2 cut(s) 107, 130
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstUI CGCG 2 cut(s) 17, 38
CfoI GCGC 2 cut(s) 17, 38
Csp6I GTAC 3 cut(s) 28, 73, 145
CviAII CATG 1 cut(s) 60
CviJI RGCY 2 cut(s) 41, 176
CviKI_1 RGCY 2 cut(s) 41, 176
CviQI GTAC 3 cut(s) 28, 73, 145
DpnI GATC 2 cut(s) 109, 132
DpnII GATC 2 cut(s) 107, 130
Eco32I GATATC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 126
EcoRV GATATC 1 cut(s) 48
FaeI CATG 1 cut(s) 63
FaiI YATR 1 cut(s) 61
FatI CATG 1 cut(s) 59
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 18, 21, 24, 39
Fsp4HI GCNGC 4 cut(s) 18, 21, 24, 39
FspBI CTAG 1 cut(s) 33
GlaI GCGC 2 cut(s) 16, 37
GluI GCNGC 4 cut(s) 18, 21, 24, 39
HhaI GCGC 2 cut(s) 17, 38
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 2 cut(s) 15, 36
HinP1I GCGC 2 cut(s) 15, 36
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 6, 145
Hpy188I TCNGA 3 cut(s) 45, 52, 112
Hpy188III TCNNGA 2 cut(s) 95, 213
Hpy8I GTNNAC 2 cut(s) 6, 145
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 2 cut(s) 15, 36
Kzo9I GATC 2 cut(s) 107, 130
LpnPI CCDG 3 cut(s) 113, 140, 167
MaeI CTAG 1 cut(s) 33
MalI GATC 2 cut(s) 109, 132
MboI GATC 2 cut(s) 107, 130
MboII GAAGA 3 cut(s) 59, 110, 172
MluCI AATT 1 cut(s) 101
MnlI CCTC 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 2 cut(s) 17, 38
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 2 cut(s) 107, 130
NlaIII CATG 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PctI GAATGC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 199
PkrI GCNGC 4 cut(s) 19, 22, 25, 40
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 199
RsaI GTAC 3 cut(s) 29, 74, 146
RsaNI GTAC 3 cut(s) 28, 73, 145
RseI CAYNNNNRTG 1 cut(s) 138
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 4 cut(s) 18, 21, 24, 39
Sau3AI GATC 2 cut(s) 107, 130
ScaI AGTACT 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 128
SetI ASST 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 101
SsiI CCGC 4 cut(s) 17, 20, 23, 38
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 5, 178
TasI AATT 1 cut(s) 101
TatI WGTACW 2 cut(s) 72, 144
TauI GCSGC 4 cut(s) 20, 23, 26, 41
TfiI GAWTC 1 cut(s) 53
Tth111I GACNNNGTC 1 cut(s) 199
XapI RAATTY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.