Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016127

Physical Location & Seq

Genomic Coordinates Forward (+)

30922995 .. 30926543

Gene Structure 3549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCATCATCGTCATCATCATCATCATCGAGTGCGTCAACACCTCCATACCCAAGCGCTGCTAGAATCTCTGATTCTCAATGTTATCAGCAGTACACTGCCTCTCTCAAATGTCTAGAAAAATATCACTCAGACAAGAGCAAATGTCAAGAACATTTTGATATTTATAAAGAATGCAAGAAAAAGGAGAGAGAAGCTCGATTGGAGCGAAACAAGAGTAGGTCTCTTTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

78

Amino Acids

8.88

Weight (kDa)

9.14

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHCH	PF06747	28 - 62	7.4e-08	CHCH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0016127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02160 AT1G02160
fragaria_vesca	FvH4_7g09140
malus_domestica	MD02G1221100.v1.1 MD07G1096500.v1.1
prunus_persica	Prupe.2G120100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345181
rosa_multiflora	Rmu_sc0008520.1_g000006
rosa_roxburghii	Rroxscaffold_4G00309200
rosa_rugosa	Rorug01G0176300
rosa_samantha	Rh1AG194300 Rh1BG160800 Rh1CG179100 Rh1DG191100
rosa_wichuraiana	Rw1G016010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AfaI	GTAC	1 cut(s)	95
AfeI	AGCGCT	1 cut(s)	58
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	228
Aor51HI	AGCGCT	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	2 cut(s)	63, 116
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	14
BplI	GAGNNNNNCTC	3 cut(s)	181, 213, 208
BsaI	GGTCTC	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
CfoI	GCGC	1 cut(s)	59
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	94
CviJI	RGCY	1 cut(s)	197
CviKI_1	RGCY	1 cut(s)	197
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	228
Eco47III	AGCGCT	1 cut(s)	58
FaiI	YATR	2 cut(s)	49, 168
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	63, 116
FspEI	CC	8 cut(s)	57, 60, 65, 66, 115, 170, 188, 205
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	60
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	2 cut(s)	66, 74
Hpy166II	GTNNAC	2 cut(s)	39, 96
Hpy188I	TCNGA	2 cut(s)	73, 133
Hpy188III	TCNNGA	3 cut(s)	116, 149, 234
Hpy8I	GTNNAC	2 cut(s)	39, 96
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	63, 116
MnlI	CCTC	2 cut(s)	54, 112
Mva1269I	GAATGC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	66, 74
PkrI	GCNGC	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	168
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SatI	GCNGC	1 cut(s)	60
SetI	ASST	3 cut(s)	46, 199, 224
SfaNI	GCATC	1 cut(s)	14
SgeI	CNNG	9 cut(s)	42, 66, 75, 128, 148, 161, 190, 210, 226
SspMI	CTAG	2 cut(s)	63, 116
TaqI	TCGA	2 cut(s)	29, 199
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	66, 74
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	1 cut(s)	59
TspRI	CASTG	1 cut(s)	103
XbaI	TCTAGA	1 cut(s)	115
XspI	CTAG	2 cut(s)	63, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.