MD07G1096500.v1.1

Cytochrome c oxidase-assembly factor COX23

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016127
Physical Location & Seq
Reverse (-)
10538604 .. 10542640
4037 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1096500.v1.1.491

Sequence Viewer

Length: 255 bp
ATGATTAAGGACCGCATCCAAATAGAACAAGAAACAGCAAGGGCATCGGGAGCGTCAACACCGCCGTATCCAAGCGCTGCTAGAATCTCCGATTCTCAGTGTTATCCTCAGTACACCGCCTCTTTAAAGTGTCTGGAAGAAAATAACTCGGACAAGATCAAATGCCAAGAACATTTTGATATGTACAAAGAGTGCAAGAAAAAGGAGAGGTTAGCTCGATTGGAGCGCAACAAGACTAGGTCACTTTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHCH

Protein Analysis

85

Amino Acids

9.76

Weight (kDa)

8.96

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 34 - 68 4.3e-09 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02160 AT1G02160
fragaria_vesca FvH4_7g09140
malus_domestica MD02G1221100.v1.1 MD07G1096500.v1.1
prunus_persica Prupe.2G120100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345181
rosa_multiflora Rmu_sc0008520.1_g000006
rosa_roxburghii Rroxscaffold_4G00309200
rosa_rugosa Rorug01G0176300
rosa_samantha Rh1AG194300 Rh1BG160800 Rh1CG179100 Rh1DG191100
rosa_wichuraiana Rw1G016010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 13, 62, 117
AfaI GTAC 2 cut(s) 113, 185
AfeI AGCGCT 1 cut(s) 76
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 77
AspLEI GCGC 2 cut(s) 77, 228
AspS9I GGNCC 1 cut(s) 10
AvaII GGWCC 1 cut(s) 10
BaeI ACNNNNGTAYC 2 cut(s) 50, 83
BbvI GCAGC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciVI GTATCC 1 cut(s) 78
BfaI CTAG 2 cut(s) 81, 237
BfoI RGCGCY 1 cut(s) 78
BfuI GTATCC 1 cut(s) 78
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmsI GCATC 2 cut(s) 24, 53
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 110, 122
BseXI GCAGC 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 156
BspACI CCGC 3 cut(s) 13, 62, 117
BspCNI CTCAG 2 cut(s) 109, 121
BsrGI TGTACA 1 cut(s) 183
BssMI GATC 1 cut(s) 156
BstAUI TGTACA 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 96, 108
BstF5I GGATG 1 cut(s) 15
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 228
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 64
BsuI GTATCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 104
CfoI GCGC 2 cut(s) 77, 228
Cfr13I GGNCC 1 cut(s) 10
CseI GACGC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 112, 184
CviJI RGCY 1 cut(s) 215
CviKI_1 RGCY 1 cut(s) 215
CviQI GTAC 2 cut(s) 112, 184
DdeI CTNAG 2 cut(s) 96, 108
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
DraI TTTAAA 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 10
Eco47III AGCGCT 1 cut(s) 76
FaiI YATR 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 2
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 2 cut(s) 81, 237
GlaI GCGC 2 cut(s) 76, 227
GluI GCNGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 78
HgaI GACGC 1 cut(s) 42
HhaI GCGC 2 cut(s) 77, 228
Hin6I GCGC 2 cut(s) 75, 226
HinP1I GCGC 2 cut(s) 75, 226
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 84, 92
Hpy166II GTNNAC 2 cut(s) 57, 114
Hpy188I TCNGA 2 cut(s) 91, 151
Hpy188III TCNNGA 3 cut(s) 48, 134, 252
Hpy8I GTNNAC 2 cut(s) 57, 114
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 96, 108
HspAI GCGC 2 cut(s) 75, 226
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 50, 223
LpnPI CCDG 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 24, 53
MaeI CTAG 2 cut(s) 81, 237
MaeIII GTNAC 1 cut(s) 240
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 149
MnlI CCTC 3 cut(s) 117, 130, 201
MseI TTAA 2 cut(s) 6, 125
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 84, 92
PflFI GACNNNGTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 10
PsyI GACNNNGTC 1 cut(s) 238
RsaI GTAC 2 cut(s) 113, 185
RsaNI GTAC 2 cut(s) 112, 184
SaqAI TTAA 2 cut(s) 6, 125
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 10
SetI ASST 3 cut(s) 212, 217, 242
SfaNI GCATC 2 cut(s) 24, 53
SinI GGWCC 1 cut(s) 10
SsiI CCGC 3 cut(s) 13, 62, 117
SspMI CTAG 2 cut(s) 81, 237
TaqI TCGA 1 cut(s) 217
TatI WGTACW 2 cut(s) 111, 183
TfiI GAWTC 2 cut(s) 84, 92
Tru1I TTAA 2 cut(s) 6, 125
Tru9I TTAA 2 cut(s) 6, 125
TscAI CASTG 1 cut(s) 104
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 240
TspRI CASTG 1 cut(s) 104
Tth111I GACNNNGTC 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 10
XspI CTAG 2 cut(s) 81, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.