RchiOBHm_Chr1g0345181

Cytochrome c oxidase-assembly factor COX23

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016127
Physical Location & Seq
Reverse (-)
37570455 .. 37574119
3665 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57153

Sequence Viewer

Length: 219 bp
ATGGCGTCATCGAGTGCGTCAACACCTCCATATCCAAGCGCTGCTAGAATCTCTGATTCTCAATGTTATCAGCAGTACACTGCCTCTCTCAAATGTCTAGAAAAATATCACTCAGACAAGAGCAAATGTCAAGAACATTTTGATATTTATAAAGAATGCAAGAAAAAGGAGAGAGAAGCTCGATTGGAGCGAAACAAGAGTAGGTCTCTTTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHCH

Protein Analysis

72

Amino Acids

8.36

Weight (kDa)

9.14

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 22 - 56 6e-08 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02160 AT1G02160
fragaria_vesca FvH4_7g09140
malus_domestica MD02G1221100.v1.1 MD07G1096500.v1.1
prunus_persica Prupe.2G120100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345181
rosa_multiflora Rmu_sc0008520.1_g000006
rosa_roxburghii Rroxscaffold_4G00309200
rosa_rugosa Rorug01G0176300
rosa_samantha Rh1AG194300 Rh1BG160800 Rh1CG179100 Rh1DG191100
rosa_wichuraiana Rw1G016010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 77
AfeI AGCGCT 1 cut(s) 40
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 210
Aor51HI AGCGCT 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 2 cut(s) 45, 98
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BplI GAGNNNNNCTC 3 cut(s) 163, 195, 190
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 210
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 41
CseI GACGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 76
CviJI RGCY 1 cut(s) 179
CviKI_1 RGCY 1 cut(s) 179
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 210
Eco47III AGCGCT 1 cut(s) 40
FaiI YATR 2 cut(s) 31, 150
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 2 cut(s) 45, 98
FspEI CC 7 cut(s) 39, 42, 48, 97, 152, 170, 187
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 42
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 2 cut(s) 48, 56
Hpy166II GTNNAC 2 cut(s) 21, 78
Hpy188I TCNGA 2 cut(s) 55, 115
Hpy188III TCNNGA 3 cut(s) 98, 131, 216
Hpy8I GTNNAC 2 cut(s) 21, 78
HpyCH4V TGCA 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 112
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 2 cut(s) 45, 98
MnlI CCTC 2 cut(s) 36, 94
Mva1269I GAATGC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 48, 56
PkrI GCNGC 1 cut(s) 43
PsiI TTATAA 1 cut(s) 150
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SatI GCNGC 1 cut(s) 42
SetI ASST 3 cut(s) 28, 181, 206
SgeI CNNG 9 cut(s) 24, 48, 57, 110, 130, 143, 172, 192, 208
SspMI CTAG 2 cut(s) 45, 98
TaqI TCGA 2 cut(s) 11, 181
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 2 cut(s) 48, 56
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 41
TspRI CASTG 1 cut(s) 85
XbaI TCTAGA 1 cut(s) 97
XspI CTAG 2 cut(s) 45, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.