MD02G1221100.v1.1

Cytochrome c oxidase-assembly factor COX23

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016127
Physical Location & Seq
Forward (+)
25695644 .. 25698409
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1221100.v1.1.491

Sequence Viewer

Length: 216 bp
ATGGCATCGGGAGCGTCAACACCGCCGTATCCAAGCGCTGCTAGAATCTCCGATTCTCAATGTTATCCTCAGTACACTGCCTCTTTAAAGTGTCTAGAAGAATATAACTCGGACAAGAGCAAATGTCAAAAGCATTTTGATATTTACAAAGAATGCAAGAAACAGGAGAGGCTAGCTCGATTGGAACGTAACAAGAGTAGGTCTCTTTTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHCH

Protein Analysis

72

Amino Acids

8.17

Weight (kDa)

9.16

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 21 - 55 3.7e-09 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02160 AT1G02160
fragaria_vesca FvH4_7g09140
malus_domestica MD02G1221100.v1.1 MD07G1096500.v1.1
prunus_persica Prupe.2G120100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345181
rosa_multiflora Rmu_sc0008520.1_g000006
rosa_roxburghii Rroxscaffold_4G00309200
rosa_rugosa Rorug01G0176300
rosa_samantha Rh1AG194300 Rh1BG160800 Rh1CG179100 Rh1DG191100
rosa_wichuraiana Rw1G016010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 23
AfaI GTAC 1 cut(s) 74
AfeI AGCGCT 1 cut(s) 37
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 207
Aor51HI AGCGCT 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 38
AsuNHI GCTAGC 1 cut(s) 172
BaeI ACNNNNGTAYC 2 cut(s) 11, 44
BbvI GCAGC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 10
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 3 cut(s) 42, 95, 173
BfoI RGCGCY 1 cut(s) 39
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 1 cut(s) 176
BplI GAGNNNNNCTC 3 cut(s) 160, 192, 187
BsaI GGTCTC 1 cut(s) 207
BseMII CTCAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 207
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 212
BspOI GCTAGC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 69
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstMAI GTCTC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 25
BsuI GTATCC 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 174
CciI TCATGA 1 cut(s) 212
CfoI GCGC 1 cut(s) 38
CseI GACGC 1 cut(s) 3
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 213
CviJI RGCY 2 cut(s) 172, 176
CviKI_1 RGCY 2 cut(s) 172, 176
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 69
DraI TTTAAA 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 207
Eco47III AGCGCT 1 cut(s) 37
FaeI CATG 1 cut(s) 216
FaiI YATR 2 cut(s) 105, 214
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 3 cut(s) 42, 95, 173
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 39
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 2 cut(s) 45, 53
Hpy166II GTNNAC 2 cut(s) 18, 75
Hpy188I TCNGA 2 cut(s) 52, 112
Hpy188III TCNNGA 3 cut(s) 9, 95, 213
Hpy8I GTNNAC 2 cut(s) 18, 75
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 14
MaeI CTAG 3 cut(s) 42, 95, 173
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 1 cut(s) 110
MnlI CCTC 3 cut(s) 78, 91, 162
MseI TTAA 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 11
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 216
PagI TCATGA 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PctI GAATGC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 45, 53
PkrI GCNGC 1 cut(s) 40
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 39
SetI ASST 3 cut(s) 178, 190, 203
SfaNI GCATC 1 cut(s) 14
SsiI CCGC 1 cut(s) 23
SspMI CTAG 3 cut(s) 42, 95, 173
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 178
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 2 cut(s) 45, 53
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 38
TspRI CASTG 1 cut(s) 82
XbaI TCTAGA 1 cut(s) 94
XspI CTAG 3 cut(s) 42, 95, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.