Rh1BG160800

Cytochrome c oxidase-assembly factor COX23

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0016127
Physical Location & Seq
Reverse (-)
25963428 .. 25969177
5750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG160800.1

Sequence Viewer

Length: 207 bp
ATGGCATCATCGTCGTCATCATCGAGTGCGTCAACACCTCCATATCCAAGCGCTGTTAGAATCTCTGATTCTCAATGTTATCAGCAGTACACTGCCTCTCTCAAATGTCTAGAAAAATATCACTCAGACAAGAGCAAATGTCAAGAACATTTTGATATTTATAAAGAATGCAAGAAAAAGGAGGTATTGCTGCTCTTAGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHCH

Protein Analysis

68

Amino Acids

7.67

Weight (kDa)

7.65

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 26 - 60 5.2e-08 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02160 AT1G02160
fragaria_vesca FvH4_7g09140
malus_domestica MD02G1221100.v1.1 MD07G1096500.v1.1
prunus_persica Prupe.2G120100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345181
rosa_multiflora Rmu_sc0008520.1_g000006
rosa_roxburghii Rroxscaffold_4G00309200
rosa_rugosa Rorug01G0176300
rosa_samantha Rh1AG194300 Rh1BG160800 Rh1CG179100 Rh1DG191100
rosa_wichuraiana Rw1G016010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AfaI GTAC 1 cut(s) 89
AfeI AGCGCT 1 cut(s) 52
Aor51HI AGCGCT 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 177
BcgI CGANNNNNNTGC 1 cut(s) 28
BfaI CTAG 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
BmsI GCATC 1 cut(s) 14
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 124, 196
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
CfoI GCGC 1 cut(s) 53
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 88
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 2 cut(s) 124, 196
Eco47III AGCGCT 1 cut(s) 52
FaiI YATR 2 cut(s) 43, 162
Fnu4HI GCNGC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 1 cut(s) 110
FspEI CC 6 cut(s) 51, 54, 60, 109, 164, 167
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 54
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 53
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 2 cut(s) 60, 68
Hpy166II GTNNAC 2 cut(s) 33, 90
Hpy188I TCNGA 2 cut(s) 67, 127
Hpy188III TCNNGA 2 cut(s) 110, 143
Hpy8I GTNNAC 2 cut(s) 33, 90
Hpy99I CGWCG 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 124, 196
HspAI GCGC 1 cut(s) 51
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 110
MnlI CCTC 3 cut(s) 48, 106, 175
MseI TTAA 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 60, 68
PkrI GCNGC 1 cut(s) 192
PsiI TTATAA 1 cut(s) 162
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 205
SatI GCNGC 1 cut(s) 191
SetI ASST 2 cut(s) 40, 186
SfaNI GCATC 1 cut(s) 14
SgeI CNNG 6 cut(s) 36, 60, 122, 142, 155, 184
SspMI CTAG 1 cut(s) 110
TaqI TCGA 1 cut(s) 23
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 2 cut(s) 60, 68
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
TscAI CASTG 1 cut(s) 97
TseI GCWGC 1 cut(s) 190
TspRI CASTG 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 109
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.