Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010051

Physical Location & Seq

Genomic Coordinates Reverse (-)

413522 .. 414649

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGAACGAAATCAGCATTTTGGAGTTGATTTTACTGTTTCTGTCACTCTCATCAGTGCTAGCTAGCTCCAAATTGCACGGAAACTCAGCTCATGAAATGGTGAGCATCTTGAACCAGAACAGAACAGCTCGGAAACTAGGCAAACTAAATGAGAGTCCCGGTCTTGGCTGCATGGCCCTCCAGTATGTTGAGCTCTGCGAGGGGAATTGCAATGTCAACAACACTCTCAGCTGTGAACACCCTGAAGACGACTTCACTCAGGTGTTTGCCCCAAACTGTGGTGTAGAACTCCCCACTTTTGGTACCATAACTGGCCATATCCTCGGCTGCAGCTCTAAGTATGCAGCACCAGAAGTCGCTTTCTCAGACATTCTCTTTAGAGATAGCAGTGCGTTGTCGGTGCTCAGAAACAGGTCGCATACCGAGGTTGGAGTGGGAATGGCTAGGTTGCATAAAGGTACCTTCTTTTGGTGTCTTCTCTTTAGCGATGGTGTGAAAAACTCCTCCTTTGTACTGGAAGATAACGGCCGGGGTATCAAACAAAGAACAGGCTGCTACAGCGGAAGTGCTTTTCCTTGCAGCAGCAACGCACACATGATTTGTATGCGCCTTCTGAACAGCTTTCTGGGACTTCTCTTCTCTTCCTTCTGTCTATTCGAGAAACACCTTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

24.79

Weight (kDa)

7.05

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02180
fragaria_vesca	FvH4_7g08840 FvH4_7g08840 FvH4_7g08840 FvH4_7g08840
malus_domestica	MD02G1223300.v1.1 MD07G1091400.v1.1
prunus_persica	Prupe.2G116600_v2.0.a1
pyrus_communis	pycom07g07470
rosa_chinensis	RchiOBHm_Chr1g0344261
rosa_laevigata	RLG00000028914
rosa_multiflora	Rmu_co8335435.1_g000001 Rmu_sc0000019.1_g000008 Rmu_sc0014172.1_g000002
rosa_roxburghii	Rroxscaffold_4G00309970
rosa_rugosa	Rorug01G0172600
rosa_samantha	Rh1AG188500 Rh1BG154900 Rh1CG174300 Rh1DG187000
rosa_wichuraiana	Rw1G015530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	305, 461
AccB1I	GGYRCC	2 cut(s)	305, 461
AccB7I	CCANNNNNTGG	1 cut(s)	281
AciI	CCGC	1 cut(s)	564
AcoI	YGGCCR	2 cut(s)	316, 529
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	3 cut(s)	307, 463, 516
AfiI	CCNNNNNNNGG	4 cut(s)	167, 281, 302, 471
AgsI	TTSAA	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	263
AluBI	AGCT	8 cut(s)	65, 69, 92, 131, 196, 234, 336, 624
AluI	AGCT	8 cut(s)	65, 69, 92, 131, 196, 234, 336, 624
Alw21I	GWGCWC	2 cut(s)	198, 408
AoxI	GGCC	3 cut(s)	177, 316, 529
ApeKI	GCWGC	7 cut(s)	171, 330, 333, 347, 555, 582, 585
ApoI	RAATTY	1 cut(s)	674
Asp718I	GGTACC	2 cut(s)	305, 461
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	162, 533
AsuHPI	GGTGA	1 cut(s)	115
AsuNHI	GCTAGC	2 cut(s)	61, 65
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	2 cut(s)	305, 461
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	2 cut(s)	255, 470
Bbv12I	GWGCWC	2 cut(s)	198, 408
BbvI	GCAGC	7 cut(s)	158, 317, 345, 359, 542, 594, 597
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	544
BcnI	CCSGG	2 cut(s)	162, 533
BfaI	CTAG	4 cut(s)	62, 66, 140, 447
BfmI	CTRYAG	2 cut(s)	331, 559
BisI	GCNGC	7 cut(s)	172, 331, 334, 348, 556, 583, 586
BlsI	GCNGC	7 cut(s)	173, 332, 335, 349, 557, 584, 587
Bme1390I	CCNGG	2 cut(s)	162, 533
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	307, 463
BmrFI	CCNGG	2 cut(s)	162, 533
BmsI	GCATC	1 cut(s)	117
BmtI	GCTAGC	2 cut(s)	65, 69
BpiI	GAAGAC	2 cut(s)	255, 470
BpmI	CTGGAG	1 cut(s)	167
BpuMI	CCSGG	2 cut(s)	162, 533
BsaJI	CCNNGG	3 cut(s)	325, 426, 532
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 281, 302, 471
Bse1I	ACTGG	3 cut(s)	184, 319, 522
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	3 cut(s)	325, 426, 532
BseLI	CCNNNNNNNGG	4 cut(s)	167, 281, 302, 471
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	5 cut(s)	102, 244, 275, 381, 421
BseNI	ACTGG	3 cut(s)	184, 319, 522
BseRI	GAGGAG	1 cut(s)	496
BseX3I	CGGCCG	1 cut(s)	529
BseXI	GCAGC	7 cut(s)	158, 317, 345, 359, 542, 594, 597
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	3 cut(s)	179, 318, 531
BshNI	GGYRCC	2 cut(s)	305, 461
BsiEI	CGRYCG	1 cut(s)	532
BsiHKAI	GWGCWC	2 cut(s)	198, 408
BsiSI	CCGG	2 cut(s)	162, 532
BslFI	GGGAC	2 cut(s)	144, 645
BslI	CCNNNNNNNGG	4 cut(s)	167, 281, 302, 471
BsmFI	GGGAC	2 cut(s)	144, 645
BsnI	GGCC	3 cut(s)	179, 318, 531
Bsp1286I	GDGCHC	2 cut(s)	198, 408
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	3 cut(s)	179, 318, 531
BspCNI	CTCAG	5 cut(s)	101, 243, 274, 380, 420
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	307, 463
BspMAI	CTGCAG	1 cut(s)	335
BspOI	GCTAGC	2 cut(s)	65, 69
BspT107I	GGYRCC	2 cut(s)	305, 461
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	3 cut(s)	184, 319, 522
BssECI	CCNNGG	3 cut(s)	325, 426, 532
Bst4CI	ACNGT	2 cut(s)	39, 281
Bst6I	CTCTTC	2 cut(s)	644, 649
BstC8I	GCNNGC	2 cut(s)	63, 67
BstDEI	CTNAG	6 cut(s)	88, 230, 261, 339, 367, 407
BstHHI	GCGC	1 cut(s)	612
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	1 cut(s)	561
BstSCI	CCNGG	2 cut(s)	160, 531
BstSFI	CTRYAG	2 cut(s)	331, 559
BstV1I	GCAGC	7 cut(s)	158, 317, 345, 359, 542, 594, 597
BstV2I	GAAGAC	2 cut(s)	255, 470
BstZI	CGGCCG	1 cut(s)	529
BsuRI	GGCC	3 cut(s)	179, 318, 531
BtgZI	GCGATG	1 cut(s)	504
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	63, 397
Cac8I	GCNNGC	2 cut(s)	63, 67
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	306, 462, 515
CviAII	CATG	3 cut(s)	95, 175, 598
CviQI	GTAC	3 cut(s)	306, 462, 515
DdeI	CTNAG	6 cut(s)	88, 230, 261, 339, 367, 407
EaeI	YGGCCR	2 cut(s)	316, 529
EagI	CGGCCG	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	644, 649
EarI	CTCTTC	2 cut(s)	644, 649
Ecl136II	GAGCTC	1 cut(s)	196
EclXI	CGGCCG	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	198
Eco52I	CGGCCG	1 cut(s)	529
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	3 cut(s)	98, 178, 601
FaqI	GGGAC	2 cut(s)	144, 645
FatI	CATG	3 cut(s)	94, 174, 597
Fnu4HI	GCNGC	7 cut(s)	172, 331, 334, 348, 556, 583, 586
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	7 cut(s)	172, 331, 334, 348, 556, 583, 586
FspBI	CTAG	4 cut(s)	62, 66, 140, 447
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	7 cut(s)	172, 331, 334, 348, 556, 583, 586
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	3 cut(s)	179, 318, 531
HapII	CCGG	2 cut(s)	162, 532
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	3 cut(s)	98, 178, 601
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	2 cut(s)	162, 532
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	220, 239
Hpy188I	TCNGA	4 cut(s)	135, 370, 410, 618
Hpy188III	TCNNGA	3 cut(s)	95, 112, 661
Hpy8I	GTNNAC	2 cut(s)	220, 239
HpyAV	CCTTC	3 cut(s)	475, 623, 658
HpyCH4III	ACNGT	2 cut(s)	39, 281
HpyCH4V	TGCA	7 cut(s)	79, 174, 213, 333, 347, 454, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	561
HpyF3I	CTNAG	6 cut(s)	88, 230, 261, 339, 367, 407
Hsp92II	CATG	3 cut(s)	98, 178, 601
HspAI	GCGC	1 cut(s)	610
KpnI	GGTACC	2 cut(s)	309, 465
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	7 cut(s)	158, 317, 345, 359, 542, 594, 597
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	4 cut(s)	62, 66, 140, 447
MaeIII	GTNAC	1 cut(s)	45
MboII	GAAGA	6 cut(s)	16, 260, 470, 533, 631, 636
MhlI	GDGCHC	2 cut(s)	198, 408
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	3 cut(s)	74, 208, 674
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	5 cut(s)	191, 196, 335, 421, 517
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	234, 564
MspI	CCGG	2 cut(s)	162, 532
MspR9I	CCNGG	2 cut(s)	162, 533
MwoI	GCNNNNNNNGC	1 cut(s)	561
NciI	CCSGG	2 cut(s)	162, 533
NheI	GCTAGC	2 cut(s)	61, 65
NlaIII	CATG	3 cut(s)	98, 178, 601
NlaIV	GGNNCC	2 cut(s)	307, 463
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	45
OliI	CACNNNNGTG	1 cut(s)	263
PagI	TCATGA	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	7 cut(s)	173, 332, 335, 349, 557, 584, 587
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	307, 463
PspPI	GGNCC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	234
RsaI	GTAC	3 cut(s)	307, 463, 516
RsaNI	GTAC	3 cut(s)	306, 462, 515
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	7 cut(s)	172, 331, 334, 348, 556, 583, 586
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	162, 533
SduI	GDGCHC	2 cut(s)	198, 408
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	2 cut(s)	331, 559
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	74, 208, 674
SsiI	CCGC	1 cut(s)	564
SspMI	CTAG	4 cut(s)	62, 66, 140, 447
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	160, 531
TaaI	ACNGT	2 cut(s)	39, 281
TaqI	TCGA	1 cut(s)	660
TasI	AATT	3 cut(s)	74, 208, 674
TatI	WGTACW	1 cut(s)	514
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	2 cut(s)	63, 397
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	7 cut(s)	171, 330, 333, 347, 555, 582, 585
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	17, 111
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	63, 397
Van91I	CCANNNNNTGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	674
XspI	CTAG	4 cut(s)	62, 66, 140, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.