Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0010051

Physical Location & Seq

Genomic Coordinates Forward (+)

25341959 .. 25344402

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG154900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGTCCACCACCACCACTCATCTTTTTGTCCTTAAACTCTGCAACACTTCATCACTACTCTCCCCACTTTACCTCCCTACATTATTTCTTTCCCTCCTGCAAAGATCCCTGCTTTCAATCCCATTTCCCATTCCCACCATTGTTTAATCACTACCCTTTTCTTCTAACTAGCTTTGCTTTCTTTCTCCAACCTCTTTTTCTTTGGTTTTTCCTACCCAGATTCCTTGTAAAGCAAAACCCTTTTCTCTTCTCAGAAGTGAAAATGGTGAAGCGGCTTTGTTGCTCTGGGTGGTTGGTTTTTAGTAGCTGTCTACTGCTAGCAGCTCTTGTTTCCTCCAAGCACCATGGAAACCCTGCAAATGATCTTGTTGAGATTATCAACAACAATCGAACGTCTCACAAACTTTCCAAACTAAATGACAGTCCTGGACTTGGGTGTATGGCTCTGCAATTTGCTAAATCATGCAAGGGAAACTGTAGTAGGAATGGCACTATCAACTGTACGCCATCTGAAGACGACTTCACCGAAGTGTTTGCCCCAAATTGTGGCGTTGAGCTACCCACTTTCGGCACCATAACTGGACACATTGTGGGTTGTCACTCCAAGTATCTAGAACCATCATTAGCTTTTATAAATGTTCTTGTTGGAAACAACAAGGCTTTGTCAATTCTTCGGAATAAGTCACATAATGAGGTGGGAATAGGTATGGTTGGGGTTCACAAAGGGCCCTTCTTTTGGACTGTGCTCTTCAGTAGTGGGAAGACAAACTCTACATTTGTTCTAGAAAATCGGGGTGCGGGGATTCAGCAGAAGAAAGGTTGCTATAGTGGAAGCAGCATCCCTTGCAGTGCAGGACAAAAGATTAAAGCTGATTCTGTGATTTTCAACAATGTTATGATCATAGGTTTTGTTTGTGCTCATCTTCTACAAAAGTTGTACTTCAACTTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.22

Weight (kDa)

9.06

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02180
fragaria_vesca	FvH4_7g08840 FvH4_7g08840 FvH4_7g08840 FvH4_7g08840
malus_domestica	MD02G1223300.v1.1 MD07G1091400.v1.1
prunus_persica	Prupe.2G116600_v2.0.a1
pyrus_communis	pycom07g07470
rosa_chinensis	RchiOBHm_Chr1g0344261
rosa_laevigata	RLG00000028914
rosa_multiflora	Rmu_co8335435.1_g000001 Rmu_sc0000019.1_g000008 Rmu_sc0014172.1_g000002
rosa_roxburghii	Rroxscaffold_4G00309970
rosa_rugosa	Rorug01G0172600
rosa_samantha	Rh1AG188500 Rh1BG154900 Rh1CG174300 Rh1DG187000
rosa_wichuraiana	Rw1G015530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AccB1I	GGYRCC	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	2 cut(s)	274, 800
AclWI	GGATC	1 cut(s)	101
AcuI	CTGAAG	2 cut(s)	534, 736
AdeI	CACNNNGTG	1 cut(s)	592
AfaI	GTAC	2 cut(s)	505, 941
AfiI	CCNNNNNNNGG	4 cut(s)	434, 548, 569, 738
AgsI	TTSAA	3 cut(s)	119, 889, 946
AjnI	CCWGG	1 cut(s)	427
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	6 cut(s)	174, 309, 326, 559, 629, 872
AluI	AGCT	6 cut(s)	174, 309, 326, 559, 629, 872
Alw21I	GWGCWC	2 cut(s)	750, 922
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	728
ApaI	GGGCCC	1 cut(s)	732
ApeKI	GCWGC	2 cut(s)	323, 837
AspS9I	GGNCC	3 cut(s)	5, 728, 729
AsuHPI	GGTGA	2 cut(s)	280, 517
AsuNHI	GCTAGC	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	732
BanI	GGYRCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	732
BbsI	GAAGAC	2 cut(s)	522, 770
Bbv12I	GWGCWC	2 cut(s)	750, 922
BbvI	GCAGC	2 cut(s)	335, 849
BccI	CCATC	2 cut(s)	517, 628
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	429
BclI	TGATCA	1 cut(s)	900
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	4 cut(s)	171, 320, 614, 785
BfmI	CTRYAG	2 cut(s)	478, 826
BisI	GCNGC	3 cut(s)	275, 324, 838
BlsI	GCNGC	3 cut(s)	276, 325, 839
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	3 cut(s)	5, 728, 729
BmiI	GGNNCC	3 cut(s)	6, 574, 730
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	849
BmtI	GCTAGC	1 cut(s)	323
BpiI	GAAGAC	2 cut(s)	522, 770
BsaJI	CCNNGG	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	4 cut(s)	434, 548, 569, 738
Bse1I	ACTGG	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	840
BseLI	CCNNNNNNNGG	4 cut(s)	434, 548, 569, 738
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	586
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	2 cut(s)	335, 849
BsgI	GTGCAG	1 cut(s)	873
BshFI	GGCC	1 cut(s)	730
BshNI	GGYRCC	1 cut(s)	572
BsiHKAI	GWGCWC	2 cut(s)	750, 922
BslI	CCNNNNNNNGG	4 cut(s)	434, 548, 569, 738
BsmAI	GTCTC	1 cut(s)	402
BsmBI	CGTCTC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	730
Bsp120I	GGGCCC	1 cut(s)	728
Bsp1286I	GDGCHC	3 cut(s)	732, 750, 922
Bsp143I	GATC	3 cut(s)	106, 364, 900
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	2 cut(s)	274, 800
BspANI	GGCC	1 cut(s)	730
BspCNI	CTCAG	1 cut(s)	266
BspLI	GGNNCC	3 cut(s)	6, 574, 730
BspOI	GCTAGC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	755
BspT107I	GGYRCC	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	3 cut(s)	106, 364, 900
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	4 cut(s)	425, 479, 503, 745
Bst6I	CTCTTC	2 cut(s)	254, 755
BstAPI	GCANNNNNTGC	1 cut(s)	846
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	840
BstKTI	GATC	3 cut(s)	109, 367, 903
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	3 cut(s)	106, 364, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	846
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	2 cut(s)	478, 826
BstSLI	GKGCMC	1 cut(s)	732
BstV1I	GCAGC	2 cut(s)	335, 849
BstV2I	GAAGAC	2 cut(s)	522, 770
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	730
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	840
BtsI	GCAGTG	1 cut(s)	856
BtsIMutI	CAGTG	1 cut(s)	856
Cac8I	GCNNGC	1 cut(s)	321
Cfr13I	GGNCC	3 cut(s)	5, 728, 729
Csp6I	GTAC	2 cut(s)	504, 940
CviAII	CATG	2 cut(s)	347, 465
CviQI	GTAC	2 cut(s)	504, 940
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	3 cut(s)	108, 366, 902
DpnII	GATC	3 cut(s)	106, 364, 900
DraIII	CACNNNGTG	1 cut(s)	592
Eam1104I	CTCTTC	2 cut(s)	254, 755
EarI	CTCTTC	2 cut(s)	254, 755
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	732
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	2 cut(s)	534, 736
EcoO109I	RGGNCCY	2 cut(s)	728, 729
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	2 cut(s)	350, 468
FalI	AAGNNNNNCTT	1 cut(s)	926
FatI	CATG	2 cut(s)	346, 464
FauI	CCCGC	1 cut(s)	793
FbaI	TGATCA	1 cut(s)	900
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	275, 324, 838
FokI	GGATG	1 cut(s)	827
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	3 cut(s)	275, 324, 838
FspBI	CTAG	4 cut(s)	171, 320, 614, 785
GluI	GCNGC	3 cut(s)	275, 324, 838
HaeIII	GGCC	1 cut(s)	730
Hin1II	CATG	2 cut(s)	350, 468
HinfI	GANTC	3 cut(s)	222, 805, 875
HphI	GGTGA	2 cut(s)	280, 517
Hpy166II	GTNNAC	3 cut(s)	8, 314, 721
Hpy188I	TCNGA	3 cut(s)	256, 514, 678
Hpy188III	TCNNGA	2 cut(s)	614, 785
Hpy8I	GTNNAC	3 cut(s)	8, 314, 721
HpyAV	CCTTC	1 cut(s)	742
HpyCH4III	ACNGT	4 cut(s)	425, 479, 503, 745
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	7 cut(s)	44, 102, 359, 451, 468, 849, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	846
HpyF3I	CTNAG	1 cut(s)	253
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	350, 468
Ksp22I	TGATCA	1 cut(s)	900
Kzo9I	GATC	3 cut(s)	106, 364, 900
LguI	GCTCTTC	1 cut(s)	755
LpnPI	CCDG	9 cut(s)	112, 124, 232, 273, 369, 414, 441, 567, 840
Lsp1109I	GCAGC	2 cut(s)	335, 849
LweI	GCATC	1 cut(s)	849
MaeI	CTAG	4 cut(s)	171, 320, 614, 785
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	599, 684
MalI	GATC	3 cut(s)	108, 366, 902
MboI	GATC	3 cut(s)	106, 364, 900
MboII	GAAGA	8 cut(s)	155, 241, 527, 665, 742, 775, 826, 917
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	3 cut(s)	732, 750, 922
MluCI	AATT	3 cut(s)	452, 544, 669
MmeI	TCCRAC	2 cut(s)	214, 628
MnlI	CCTC	5 cut(s)	85, 106, 204, 346, 688
MseI	TTAA	3 cut(s)	35, 147, 867
MslI	CAYNNNNRTG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	846
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	3 cut(s)	106, 364, 900
NheI	GCTAGC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	350, 468
NlaIV	GGNNCC	3 cut(s)	6, 574, 730
NmuCI	GTSAC	2 cut(s)	599, 684
OliI	CACNNNNGTG	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	755
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	222, 805, 875
PflMI	CCANNNNNTGG	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	276, 325, 839
PsiI	TTATAA	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	3 cut(s)	6, 574, 730
PspOMI	GGGCCC	1 cut(s)	728
PspPI	GGNCC	3 cut(s)	5, 728, 729
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	2 cut(s)	505, 941
RsaNI	GTAC	2 cut(s)	504, 940
RseI	CAYNNNNRTG	1 cut(s)	530
SapI	GCTCTTC	1 cut(s)	755
SaqAI	TTAA	3 cut(s)	35, 147, 867
SatI	GCNGC	3 cut(s)	275, 324, 838
Sau3AI	GATC	3 cut(s)	106, 364, 900
Sau96I	GGNCC	3 cut(s)	5, 728, 729
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	3 cut(s)	732, 750, 922
SfaNI	GCATC	1 cut(s)	849
SfcI	CTRYAG	2 cut(s)	478, 826
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	3 cut(s)	452, 544, 669
SsiI	CCGC	2 cut(s)	274, 800
SspMI	CTAG	4 cut(s)	171, 320, 614, 785
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	4 cut(s)	425, 479, 503, 745
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	391
TasI	AATT	3 cut(s)	452, 544, 669
TatI	WGTACW	1 cut(s)	939
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	3 cut(s)	222, 805, 875
Tru1I	TTAA	3 cut(s)	35, 147, 867
Tru9I	TTAA	3 cut(s)	35, 147, 867
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	2 cut(s)	599, 684
TseI	GCWGC	2 cut(s)	323, 837
Tsp45I	GTSAC	2 cut(s)	599, 684
TspDTI	ATGAA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	856
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	5
XbaI	TCTAGA	2 cut(s)	613, 784
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	4 cut(s)	171, 320, 614, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.