Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010051

Physical Location & Seq

Genomic Coordinates Forward (+)

6770700 .. 6772545

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTGAAGAAGCAGATGCTTTGTTGCTGGGGGTGGCTCATAATCTTCAATCATCTGCTACTAGCAGCTCTTGTTTGCTCCAAAAGCCATGGAAACCCTGCAAGTGATCTTGTTGACATTATCAACAACAATCGAACTGCTCACAAACTTCCAAAACTAAATGACAGTTCAGGACTCGGGTGCATTGCGCTGCAATATGCTGAGTTATGCAAGGGAAACTGCACTAGCAACAATACTGTGAACTGCAAACCGTCTGAAGATGACTTCACCGAAGTTTTTGCCCCCAATTGTGGTGTGGAACTACCCACTTTCGACACCATAAGTTCCCACATTGTGGGTTGTCAATCCAAGTATCTTGAGCCCTCACTAGCGTTTGGACATGTTCTTGTTCGAGACAGCAAGGCTTTATCAATTCTGAGAAATAAATCACATACTGAGGTGGGAGTAGGCATGGTTCGGGCTCACAAGGGGCCATTTTTTTGGTGTGTTCTCTTCAGCAGTGGGAAGACAAACTCCACATTTGTGCTGGAAAATCGCGGTGAAGGGATCCGTCAAAAGAAAGGTTGCTACAGTGGAAGCAGCATACCATGCAGTGCAGGTCAAGGGAATGATTCCTCGCTGTTGAACAATGTTACTATCATTGCTTTTCTATGTGCTGTTTATCTTTTGCAACAGTTGTACTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

24.97

Weight (kDa)

8.4

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02180
fragaria_vesca	FvH4_7g08840 FvH4_7g08840 FvH4_7g08840 FvH4_7g08840
malus_domestica	MD02G1223300.v1.1 MD07G1091400.v1.1
prunus_persica	Prupe.2G116600_v2.0.a1
pyrus_communis	pycom07g07470
rosa_chinensis	RchiOBHm_Chr1g0344261
rosa_laevigata	RLG00000028914
rosa_multiflora	Rmu_co8335435.1_g000001 Rmu_sc0000019.1_g000008 Rmu_sc0014172.1_g000002
rosa_roxburghii	Rroxscaffold_4G00309970
rosa_rugosa	Rorug01G0172600
rosa_samantha	Rh1AG188500 Rh1BG154900 Rh1CG174300 Rh1DG187000
rosa_wichuraiana	Rw1G015530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccII	CGCG	1 cut(s)	537
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	2 cut(s)	541, 554
AcuI	CTGAAG	2 cut(s)	276, 478
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	2 cut(s)	290, 334
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	49, 625, 685
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	541, 554
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	3 cut(s)	65, 190, 579
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	3 cut(s)	16, 259, 551
AvaI	CYCGRG	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	546
BanII	GRGCYC	2 cut(s)	363, 463
BbsI	GAAGAC	1 cut(s)	512
BbvI	GCAGC	3 cut(s)	77, 177, 591
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	3 cut(s)	62, 225, 368
BfmI	CTRYAG	1 cut(s)	568
BfuAI	ACCTGC	1 cut(s)	587
BisI	GCNGC	3 cut(s)	66, 191, 580
BlsI	GCNGC	3 cut(s)	67, 192, 581
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	471, 548
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 334
Bse3DI	GCAATG	2 cut(s)	183, 639
BseDI	CCNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	290, 334
BseMI	GCAATG	2 cut(s)	183, 639
BseMII	CTCAG	3 cut(s)	192, 407, 426
BseXI	GCAGC	3 cut(s)	77, 177, 591
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	2 cut(s)	205, 615
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	290, 334
BsmAI	GTCTC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	363, 463
Bsp143I	GATC	2 cut(s)	106, 546
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	3 cut(s)	193, 408, 427
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	2 cut(s)	471, 548
BspMI	ACCTGC	1 cut(s)	587
BspPI	GGATC	2 cut(s)	541, 554
BsrDI	GCAATG	2 cut(s)	183, 639
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	106, 546
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	5 cut(s)	167, 238, 252, 572, 675
Bst6I	CTCTTC	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	588
BstDEI	CTNAG	3 cut(s)	201, 416, 435
BstDSI	CCRYGG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	2 cut(s)	109, 549
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	2 cut(s)	106, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 588
BstNSI	RCATGY	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	568
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	77, 177, 591
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	546
BstXI	CCANNNNNNTGG	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	472
BtgI	CCRYGG	1 cut(s)	88
BtsI	GCAGTG	2 cut(s)	505, 598
BtsIMutI	CAGTG	3 cut(s)	505, 577, 598
BveI	ACCTGC	1 cut(s)	587
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	4 cut(s)	89, 380, 451, 588
CviJI	RGCY	7 cut(s)	37, 68, 87, 361, 404, 461, 472
CviKI_1	RGCY	7 cut(s)	37, 68, 87, 361, 404, 461, 472
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	3 cut(s)	201, 416, 435
DpnI	GATC	2 cut(s)	108, 548
DpnII	GATC	2 cut(s)	106, 546
DraIII	CACNNNGTG	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	363, 463
Eco57I	CTGAAG	2 cut(s)	276, 478
Eco88I	CYCGRG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	2 cut(s)	363, 463
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	4 cut(s)	92, 383, 454, 591
FatI	CATG	4 cut(s)	88, 379, 450, 587
Fnu4HI	GCNGC	3 cut(s)	66, 191, 580
FriOI	GRGCYC	2 cut(s)	363, 463
Fsp4HI	GCNGC	3 cut(s)	66, 191, 580
FspBI	CTAG	3 cut(s)	62, 225, 368
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	3 cut(s)	66, 191, 580
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	92, 383, 454, 591
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	174, 611
HphI	GGTGA	3 cut(s)	16, 259, 551
Hpy166II	GTNNAC	2 cut(s)	115, 241
Hpy188I	TCNGA	2 cut(s)	256, 417
Hpy188III	TCNNGA	3 cut(s)	171, 356, 392
Hpy8I	GTNNAC	2 cut(s)	115, 241
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	5 cut(s)	167, 238, 252, 572, 675
HpyCH4V	TGCA	9 cut(s)	101, 183, 193, 210, 222, 246, 591, 596, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 588
HpyF3I	CTNAG	3 cut(s)	201, 416, 435
Hsp92II	CATG	4 cut(s)	92, 383, 454, 591
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	106, 546
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	5 cut(s)	13, 111, 156, 512, 582
Lsp1109I	GCAGC	3 cut(s)	77, 177, 591
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	3 cut(s)	62, 225, 368
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	2 cut(s)	108, 548
MboI	GATC	2 cut(s)	106, 546
MboII	GAAGA	5 cut(s)	19, 37, 269, 484, 517
MfeI	CAATTG	1 cut(s)	286
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	2 cut(s)	363, 463
MluCI	AATT	3 cut(s)	286, 411, 685
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	3 cut(s)	373, 430, 625
MseI	TTAA	1 cut(s)	688
MslI	CAYNNNNRTG	1 cut(s)	521
MunI	CAATTG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	84, 588
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	2 cut(s)	106, 546
NlaIII	CATG	4 cut(s)	92, 383, 454, 591
NlaIV	GGNNCC	2 cut(s)	471, 548
NspI	RCATGY	1 cut(s)	383
OliI	CACNNNNGTG	1 cut(s)	521
PciI	ACATGT	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	611
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	67, 192, 581
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PscI	ACATGT	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	471, 548
PspPI	GGNCC	1 cut(s)	470
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PsuI	RGATCY	1 cut(s)	546
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	688
SatI	GCNGC	3 cut(s)	66, 191, 580
Sau3AI	GATC	2 cut(s)	106, 546
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	363, 463
SetI	ASST	4 cut(s)	70, 441, 565, 601
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	286, 411, 685
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	3 cut(s)	62, 225, 368
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	5 cut(s)	167, 238, 252, 572, 675
TaqI	TCGA	3 cut(s)	133, 312, 391
TasI	AATT	3 cut(s)	286, 411, 685
TatI	WGTACW	1 cut(s)	678
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	1 cut(s)	688
Tru9I	TTAA	1 cut(s)	688
TscAI	CASTG	3 cut(s)	505, 577, 598
TseI	GCWGC	3 cut(s)	65, 190, 579
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	3 cut(s)	505, 577, 598
Van91I	CCANNNNNTGG	1 cut(s)	334
XceI	RCATGY	1 cut(s)	383
XcmI	CCANNNNNNNNNTGG	2 cut(s)	292, 523
XspI	CTAG	3 cut(s)	62, 225, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.