Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010051

Physical Location & Seq

Genomic Coordinates Reverse (-)

26072134 .. 26074054

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1223300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTGAAGAAGCAGCTTTGTTGCTGGGGGTGCCTCATAATCTTCAGTCATCTACTACTAGCATCTCTTGTTTGCTCCAAAATCCACGGAAACCCTGCAAATGACCTTGTTGAGATAATCAACAACAATCGAACAGCTCATAAACTTCCAAAACTTAATGACAGTCCTGGACTCGGGTGCATTGCCCTGCAATATGCTGAGTTGTGCAAGGGAAACTGCACTAGCAACAACACCGTGAACTGTAAACCATCTGAAGAGGACTTCACCCAAGTTTTTGCCCCGAATTGTGGTGTGGAACTACCCACTTTCGGCACCATAACTGCCCATATTGTGGGTTGCCAATCCAAGTATCTTGAGCCCTCACTAGCTTTTGCACATGTTCTTGTTCGAGACAACAAGGCCTTATCAATTCTGAGAAATAAATCACATACCGAGGTGGGAGTAGGAATGGTTCGGGTTCACAAAGGGCCATTCTTCTGGAGTGTTCTCTTCAGCACTGGGAAGACAAACTCCACGTTTGTACTGGAAAATCGCGGTGAAGGGATCCATCAAAAGAAAGGTTGCTACAGTGGAAGCAGCTTACCATGTAGTGCAGGTCAAGGGAATGGTTCCTCGCTGTTGAGCAATGTTACGATCATCGCTTTTCTATGTGCTGTTTATCTTTCGCAACAGTTGAATGTCAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

24.73

Weight (kDa)

8.68

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02180
fragaria_vesca	FvH4_7g08840 FvH4_7g08840 FvH4_7g08840 FvH4_7g08840
malus_domestica	MD02G1223300.v1.1 MD07G1091400.v1.1
prunus_persica	Prupe.2G116600_v2.0.a1
pyrus_communis	pycom07g07470
rosa_chinensis	RchiOBHm_Chr1g0344261
rosa_laevigata	RLG00000028914
rosa_multiflora	Rmu_co8335435.1_g000001 Rmu_sc0000019.1_g000008 Rmu_sc0014172.1_g000002
rosa_roxburghii	Rroxscaffold_4G00309970
rosa_rugosa	Rorug01G0172600
rosa_samantha	Rh1AG188500 Rh1BG154900 Rh1CG174300 Rh1DG187000
rosa_wichuraiana	Rw1G015530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AccB1I	GGYRCC	2 cut(s)	30, 311
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccII	CGCG	1 cut(s)	534
AciI	CCGC	1 cut(s)	534
AclWI	GGATC	2 cut(s)	538, 551
AcuI	CTGAAG	3 cut(s)	28, 273, 475
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	4 cut(s)	173, 287, 308, 331
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	676
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	16, 137, 368, 579
AluI	AGCT	4 cut(s)	16, 137, 368, 579
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	538, 551
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	399, 467
ApeKI	GCWGC	2 cut(s)	13, 576
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	16, 256, 548
AvaI	CYCGRG	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	543
BanI	GGYRCC	2 cut(s)	30, 311
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	25, 588
BccI	CCATC	2 cut(s)	256, 555
BciT130I	CCWGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	3 cut(s)	59, 222, 365
BfmI	CTRYAG	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	584
BisI	GCNGC	2 cut(s)	14, 577
BlsI	GCNGC	2 cut(s)	15, 578
Bme1390I	CCNGG	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	4 cut(s)	32, 313, 545, 610
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	85, 432
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 287, 308, 331
Bse1I	ACTGG	2 cut(s)	502, 528
Bse3DI	GCAATG	2 cut(s)	180, 631
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	85, 432
BseLI	CCNNNNNNNGG	4 cut(s)	173, 287, 308, 331
BseMI	GCAATG	2 cut(s)	180, 631
BseMII	CTCAG	2 cut(s)	189, 404
BseNI	ACTGG	2 cut(s)	502, 528
BseXI	GCAGC	2 cut(s)	25, 588
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	2 cut(s)	202, 612
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	401, 469
BshNI	GGYRCC	2 cut(s)	30, 311
BsiHKCI	CYCGRG	1 cut(s)	173
BslI	CCNNNNNNNGG	4 cut(s)	173, 287, 308, 331
BsmAI	GTCTC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	401, 469
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	543, 633
BspACI	CCGC	1 cut(s)	534
BspANI	GGCC	2 cut(s)	401, 469
BspCNI	CTCAG	2 cut(s)	190, 405
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	4 cut(s)	32, 313, 545, 610
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	2 cut(s)	538, 551
BspT107I	GGYRCC	2 cut(s)	30, 311
BsrDI	GCAATG	2 cut(s)	180, 631
BsrI	ACTGG	2 cut(s)	502, 528
BssECI	CCNNGG	2 cut(s)	85, 432
BssMI	GATC	2 cut(s)	543, 633
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	5 cut(s)	164, 235, 242, 569, 672
Bst6I	CTCTTC	2 cut(s)	249, 494
BstDEI	CTNAG	2 cut(s)	198, 413
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	2 cut(s)	546, 636
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	2 cut(s)	543, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	565
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	25, 588
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	543
BstXI	CCANNNNNNTGG	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	401, 469
BtgI	CCRYGG	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	495, 574
BveI	ACCTGC	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	2 cut(s)	377, 585
CviJI	RGCY	7 cut(s)	16, 137, 358, 368, 401, 469, 579
CviKI_1	RGCY	7 cut(s)	16, 137, 358, 368, 401, 469, 579
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	2 cut(s)	198, 413
DpnI	GATC	2 cut(s)	545, 635
DpnII	GATC	2 cut(s)	543, 633
Eam1104I	CTCTTC	2 cut(s)	249, 494
EarI	CTCTTC	2 cut(s)	249, 494
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	360
Eco57I	CTGAAG	3 cut(s)	28, 273, 475
Eco88I	CYCGRG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	360
FaeI	CATG	2 cut(s)	380, 588
FatI	CATG	2 cut(s)	376, 584
Fnu4HI	GCNGC	2 cut(s)	14, 577
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	2 cut(s)	14, 577
FspBI	CTAG	3 cut(s)	59, 222, 365
GluI	GCNGC	2 cut(s)	14, 577
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	401, 469
Hin1II	CATG	2 cut(s)	380, 588
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	3 cut(s)	16, 256, 548
Hpy166II	GTNNAC	3 cut(s)	238, 245, 460
Hpy188I	TCNGA	2 cut(s)	253, 414
Hpy188III	TCNNGA	3 cut(s)	353, 389, 478
Hpy8I	GTNNAC	3 cut(s)	238, 245, 460
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	5 cut(s)	164, 235, 242, 569, 672
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	7 cut(s)	98, 180, 190, 207, 219, 374, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	198, 413
HpySE526I	ACGT	1 cut(s)	515
Hsp92II	CATG	2 cut(s)	380, 588
Kzo9I	GATC	2 cut(s)	543, 633
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	9 cut(s)	10, 108, 153, 180, 200, 463, 483, 509, 579
Lsp1109I	GCAGC	2 cut(s)	25, 588
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	3 cut(s)	59, 222, 365
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	2 cut(s)	545, 635
MboI	GATC	2 cut(s)	543, 633
MboII	GAAGA	6 cut(s)	19, 34, 266, 466, 481, 514
MflI	RGATCY	1 cut(s)	543
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	3 cut(s)	283, 408, 682
MlyI	GAGTC	1 cut(s)	165
MnlI	CCTC	5 cut(s)	44, 250, 370, 427, 622
MseI	TTAA	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	2 cut(s)	543, 633
NlaIII	CATG	2 cut(s)	380, 588
NlaIV	GGNNCC	4 cut(s)	32, 313, 545, 610
NspI	RCATGY	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	401
PciI	ACATGT	1 cut(s)	376
PflMI	CCANNNNNTGG	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	15, 578
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PscI	ACATGT	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	4 cut(s)	32, 313, 545, 610
PspPI	GGNCC	1 cut(s)	467
PsrI	GAACNNNNNNTAC	2 cut(s)	435, 467
PsuI	RGATCY	1 cut(s)	543
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	14, 577
Sau3AI	GATC	2 cut(s)	543, 633
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	9 cut(s)	18, 108, 139, 370, 438, 518, 562, 581, 598
SfaNI	GCATC	1 cut(s)	71
SfcI	CTRYAG	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	283, 408, 682
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	1 cut(s)	534
SspMI	CTAG	3 cut(s)	59, 222, 365
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	5 cut(s)	164, 235, 242, 569, 672
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	2 cut(s)	130, 388
TasI	AATT	3 cut(s)	283, 408, 682
TatI	WGTACW	1 cut(s)	520
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	502, 574
TseI	GCWGC	2 cut(s)	13, 576
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	502, 574
Van91I	CCANNNNNTGG	1 cut(s)	331
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XspI	CTAG	3 cut(s)	59, 222, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.