Rmu_co8335435.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8335435.1
OG0010051
Physical Location & Seq
Forward (+)
1 .. 671
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8335435.1_g000001.1.cds

Sequence Viewer

Length: 608 bp
gaaaccctgcaaatgatcttgtcgagattatcaacaacaatcgaacgtctcacaaactttccaaactaaatgacagtcctggacttggctgtatggctctgcaatttgctaaatcatgcaagggaaactgtagtaggaatggcactatcaactgtacgccatctgaagacgacttcaccgaagtgtttgccccaaattgtggtgttgagctacccactttcggcaccataactggacacattgtgggttgtcactccaagtatctagaaccatcattagcttttgtaaatgttcttgttggaaacaacaaggctttgtcaattcttcggaataagtcacataatgaggtgggagtaggtatggttggggttcacaaagggcccttcttttggactgtgctcttcagtagtgggaagacaaactctacatttgttctagaaaatcggggtgcggggattcagcagaagaaaggttgctatagtggaagcagcatcccttgcagtgcaggacaaaagattaaagttgattctgtgattttcaacaatgttatgatcataggttttctttgtgctcatcttctgcaaaagttgtacttcaacttattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.66

Weight (kDa)

8.88

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 199
AciI CCGC 1 cut(s) 451
AcuI CTGAAG 2 cut(s) 185, 387
AdeI CACNNNGTG 1 cut(s) 243
AfaI GTAC 2 cut(s) 156, 592
AfiI CCNNNNNNNGG 4 cut(s) 85, 199, 220, 389
AgsI TTSAA 2 cut(s) 540, 597
AjnI CCWGG 1 cut(s) 78
AleI CACNNNNGTG 1 cut(s) 181
AluBI AGCT 2 cut(s) 210, 280
AluI AGCT 2 cut(s) 210, 280
Alw21I GWGCWC 2 cut(s) 401, 573
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 379
ApaI GGGCCC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 488
AspS9I GGNCC 2 cut(s) 379, 380
AsuHPI GGTGA 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 383
BbsI GAAGAC 2 cut(s) 173, 421
Bbv12I GWGCWC 2 cut(s) 401, 573
BbvI GCAGC 1 cut(s) 500
BccI CCATC 2 cut(s) 168, 279
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 265, 436
BfmI CTRYAG 2 cut(s) 129, 477
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 379, 380
BmiI GGNNCC 2 cut(s) 225, 381
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 500
BpiI GAAGAC 2 cut(s) 173, 421
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 199, 220, 389
Bse1I ACTGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 491
BseLI CCNNNNNNNGG 4 cut(s) 85, 199, 220, 389
BseNI ACTGG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 524
BshFI GGCC 1 cut(s) 381
BshNI GGYRCC 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 401, 573
BslI CCNNNNNNNGG 4 cut(s) 85, 199, 220, 389
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 381
Bsp120I GGGCCC 1 cut(s) 379
Bsp1286I GDGCHC 3 cut(s) 383, 401, 573
Bsp143I GATC 2 cut(s) 15, 551
BspACI CCGC 1 cut(s) 451
BspANI GGCC 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 225, 381
BspQI GCTCTTC 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 237
BssMI GATC 2 cut(s) 15, 551
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 4 cut(s) 76, 130, 154, 396
Bst6I CTCTTC 1 cut(s) 406
BstAPI GCANNNNNTGC 1 cut(s) 497
BstF5I GGATG 1 cut(s) 491
BstKTI GATC 2 cut(s) 18, 554
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 15, 551
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 2 cut(s) 129, 477
BstSLI GKGCMC 1 cut(s) 383
BstV1I GCAGC 1 cut(s) 500
BstV2I GAAGAC 2 cut(s) 173, 421
BsuRI GGCC 1 cut(s) 381
BtsCI GGATG 1 cut(s) 491
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
Cfr13I GGNCC 2 cut(s) 379, 380
Csp6I GTAC 2 cut(s) 155, 591
CviAII CATG 1 cut(s) 116
CviJI RGCY 6 cut(s) 89, 97, 210, 280, 313, 381
CviKI_1 RGCY 6 cut(s) 89, 97, 210, 280, 313, 381
CviQI GTAC 2 cut(s) 155, 591
DpnI GATC 2 cut(s) 17, 553
DpnII GATC 2 cut(s) 15, 551
DraIII CACNNNGTG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 383
Eco57I CTGAAG 2 cut(s) 185, 387
EcoO109I RGGNCCY 2 cut(s) 379, 380
EcoRII CCWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 383
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 1 cut(s) 119
FaiI YATR 9 cut(s) 94, 117, 229, 341, 361, 479, 550, 556, 606
FalI AAGNNNNNCTT 1 cut(s) 577
FatI CATG 1 cut(s) 115
FauI CCCGC 1 cut(s) 444
FbaI TGATCA 1 cut(s) 551
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 1 cut(s) 478
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 2 cut(s) 265, 436
GluI GCNGC 1 cut(s) 489
HaeIII GGCC 1 cut(s) 381
Hin1II CATG 1 cut(s) 119
HinfI GANTC 2 cut(s) 456, 526
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 2 cut(s) 165, 329
Hpy188III TCNNGA 3 cut(s) 24, 265, 436
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 1 cut(s) 393
HpyCH4III ACNGT 4 cut(s) 76, 130, 154, 396
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 6 cut(s) 10, 102, 119, 500, 505, 582
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 551
Kzo9I GATC 2 cut(s) 15, 551
LguI GCTCTTC 1 cut(s) 406
LpnPI CCDG 5 cut(s) 20, 65, 92, 218, 491
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 1 cut(s) 500
MaeI CTAG 2 cut(s) 265, 436
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 250, 335
MalI GATC 2 cut(s) 17, 553
MboI GATC 2 cut(s) 15, 551
MboII GAAGA 6 cut(s) 178, 316, 393, 426, 477, 568
MhlI GDGCHC 3 cut(s) 383, 401, 573
MluCI AATT 3 cut(s) 103, 195, 320
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 1 cut(s) 339
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 2 cut(s) 15, 551
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 2 cut(s) 225, 381
NmuCI GTSAC 2 cut(s) 250, 335
OliI CACNNNNGTG 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PfeI GAWTC 2 cut(s) 456, 526
PflMI CCANNNNNTGG 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 225, 381
PspOMI GGGCCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 379, 380
RsaI GTAC 2 cut(s) 156, 592
RsaNI GTAC 2 cut(s) 155, 591
RseI CAYNNNNRTG 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 406
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 2 cut(s) 15, 551
Sau96I GGNCC 2 cut(s) 379, 380
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 3 cut(s) 383, 401, 573
SetI ASST 7 cut(s) 49, 212, 282, 350, 360, 474, 561
SfaNI GCATC 1 cut(s) 500
SfcI CTRYAG 2 cut(s) 129, 477
SmiMI CAYNNNNRTG 1 cut(s) 181
Sse9I AATT 3 cut(s) 103, 195, 320
SsiI CCGC 1 cut(s) 451
SspMI CTAG 2 cut(s) 265, 436
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 4 cut(s) 76, 130, 154, 396
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 23, 42
TasI AATT 3 cut(s) 103, 195, 320
TatI WGTACW 1 cut(s) 590
TfiI GAWTC 2 cut(s) 456, 526
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 2 cut(s) 250, 335
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 2 cut(s) 250, 335
TspRI CASTG 1 cut(s) 507
Van91I CCANNNNNTGG 1 cut(s) 199
XbaI TCTAGA 2 cut(s) 264, 435
XspI CTAG 2 cut(s) 265, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.