Rh1DG187000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0010051
Physical Location & Seq
Forward (+)
37506065 .. 37508508
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG187000.1

Sequence Viewer

Length: 642 bp
ATGATGGGTGACTTGGTGGTGGTTTGTCCCTCAGGAAACCCTGCAAATGATCTTGTTGAGATTATCAACAACAATCGAACGTCTCACAAACTTTCCAAACTAAATGACAGTCCTGGACTTGGGTGTATGGCTCTGCAATTTGCTAAATCATGCAAGGGAAACTGTAGTAGGAATGGCACTATCAACTGTACGCCATCTGAAGACGACTTCACCGAAGTGTTTGCCCCAAATTGTGGCGTTGAGCTACCCACTTTCGGCACCATAACTGGACACATTGTGGGTTGTCACTCCAAGTATCTAGAACCATCATTAGCTTTTATAAATGTTCTTGTTGGAAACAACAAGGCTTTGTCAATTCTTCGGAATAAGTCACATAATGAGGTGGGAATAGGTATGGTTGGGGTTCACAAAGGGCCCTTCTTTTGGACTGTGCTCTTCAGTAGTGGGAAGACAAACTCTACATTTGTTCTAGAAAATCGGGGTGCGGGGATTCAGCAGAAGAAAGGTTGCTATAGTGGAAGCAGCATCCCTTGCAGTGCAGGACAAAAGATTAAAGCTGATTCTGTGATTTTCAACAATGTTATGATCATAGGTTTTGTTTGTGCTCATCTTCTACAAAAGTTGTACTTCAACTTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

22.83

Weight (kDa)

8.68

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 233
AciI CCGC 1 cut(s) 485
AcuI CTGAAG 2 cut(s) 219, 421
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 2 cut(s) 190, 626
AfiI CCNNNNNNNGG 4 cut(s) 119, 233, 254, 423
AgsI TTSAA 2 cut(s) 574, 631
AjnI CCWGG 1 cut(s) 112
AleI CACNNNNGTG 1 cut(s) 215
AluBI AGCT 3 cut(s) 244, 314, 557
AluI AGCT 3 cut(s) 244, 314, 557
Alw21I GWGCWC 2 cut(s) 435, 607
Alw26I GTCTC 1 cut(s) 87
AoxI GGCC 1 cut(s) 413
ApaI GGGCCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 522
AspS9I GGNCC 2 cut(s) 413, 414
AsuHPI GGTGA 2 cut(s) 20, 202
AxyI CCTNAGG 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 417
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 417
BbsI GAAGAC 2 cut(s) 207, 455
Bbv12I GWGCWC 2 cut(s) 435, 607
BbvI GCAGC 1 cut(s) 534
BccI CCATC 2 cut(s) 202, 313
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 1 cut(s) 114
BclI TGATCA 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 2 cut(s) 299, 470
BfmI CTRYAG 2 cut(s) 163, 511
BisI GCNGC 1 cut(s) 523
BlsI GCNGC 1 cut(s) 524
Bme1390I CCNGG 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 413, 414
BmiI GGNNCC 2 cut(s) 259, 415
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 534
BpiI GAAGAC 2 cut(s) 207, 455
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 233, 254, 423
Bse1I ACTGG 1 cut(s) 271
Bse21I CCTNAGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 525
BseLI CCNNNNNNNGG 4 cut(s) 119, 233, 254, 423
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 271
BseSI GKGCMC 1 cut(s) 417
BseXI GCAGC 1 cut(s) 534
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 1 cut(s) 415
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 435, 607
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 4 cut(s) 119, 233, 254, 423
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 1 cut(s) 415
Bsp120I GGGCCC 1 cut(s) 413
Bsp1286I GDGCHC 3 cut(s) 417, 435, 607
Bsp143I GATC 2 cut(s) 49, 585
BspACI CCGC 1 cut(s) 485
BspANI GGCC 1 cut(s) 415
BspCNI CTCAG 1 cut(s) 44
BspLI GGNNCC 2 cut(s) 259, 415
BspQI GCTCTTC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 271
BssMI GATC 2 cut(s) 49, 585
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 4 cut(s) 110, 164, 188, 430
Bst6I CTCTTC 1 cut(s) 440
BstAPI GCANNNNNTGC 1 cut(s) 531
BstDEI CTNAG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 525
BstKTI GATC 2 cut(s) 52, 588
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 49, 585
BstMWI GCNNNNNNNGC 1 cut(s) 531
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 163, 511
BstSLI GKGCMC 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 534
BstV2I GAAGAC 2 cut(s) 207, 455
Bsu36I CCTNAGG 1 cut(s) 31
BsuRI GGCC 1 cut(s) 415
BtsCI GGATG 1 cut(s) 525
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 413, 414
Csp6I GTAC 2 cut(s) 189, 625
CviAII CATG 1 cut(s) 150
CviJI RGCY 6 cut(s) 131, 244, 314, 347, 415, 557
CviKI_1 RGCY 6 cut(s) 131, 244, 314, 347, 415, 557
CviQI GTAC 2 cut(s) 189, 625
DdeI CTNAG 1 cut(s) 31
DpnI GATC 2 cut(s) 51, 587
DpnII GATC 2 cut(s) 49, 585
DraIII CACNNNGTG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 417
Eco57I CTGAAG 2 cut(s) 219, 421
Eco81I CCTNAGG 1 cut(s) 31
EcoO109I RGGNCCY 2 cut(s) 413, 414
EcoRII CCWGG 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 1 cut(s) 153
FalI AAGNNNNNCTT 1 cut(s) 611
FaqI GGGAC 1 cut(s) 12
FatI CATG 1 cut(s) 149
FauI CCCGC 1 cut(s) 478
FbaI TGATCA 1 cut(s) 585
Fnu4HI GCNGC 1 cut(s) 523
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 523
FspBI CTAG 2 cut(s) 299, 470
GluI GCNGC 1 cut(s) 523
HaeIII GGCC 1 cut(s) 415
Hin1II CATG 1 cut(s) 153
HinfI GANTC 2 cut(s) 490, 560
HphI GGTGA 2 cut(s) 20, 202
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 199, 363
Hpy188III TCNNGA 3 cut(s) 33, 299, 470
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 4 cut(s) 110, 164, 188, 430
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 5 cut(s) 44, 136, 153, 534, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 531
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 2 cut(s) 49, 585
LguI GCTCTTC 1 cut(s) 440
LpnPI CCDG 6 cut(s) 18, 54, 99, 126, 252, 525
Lsp1109I GCAGC 1 cut(s) 534
LweI GCATC 1 cut(s) 534
MaeI CTAG 2 cut(s) 299, 470
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 3 cut(s) 8, 284, 369
MalI GATC 2 cut(s) 51, 587
MboI GATC 2 cut(s) 49, 585
MboII GAAGA 6 cut(s) 212, 350, 427, 460, 511, 602
MhlI GDGCHC 3 cut(s) 417, 435, 607
MluCI AATT 3 cut(s) 137, 229, 354
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 2 cut(s) 40, 373
MseI TTAA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 531
NdeII GATC 2 cut(s) 49, 585
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 2 cut(s) 259, 415
NmuCI GTSAC 3 cut(s) 8, 284, 369
OliI CACNNNNGTG 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 2 cut(s) 490, 560
PflMI CCANNNNNTGG 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 1 cut(s) 524
PsiI TTATAA 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 259, 415
PspOMI GGGCCC 1 cut(s) 413
PspPI GGNCC 2 cut(s) 413, 414
RsaI GTAC 2 cut(s) 190, 626
RsaNI GTAC 2 cut(s) 189, 625
RseI CAYNNNNRTG 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 1 cut(s) 523
Sau3AI GATC 2 cut(s) 49, 585
Sau96I GGNCC 2 cut(s) 413, 414
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 3 cut(s) 417, 435, 607
SetI ASST 8 cut(s) 83, 246, 316, 384, 394, 508, 559, 595
SfaNI GCATC 1 cut(s) 534
SfcI CTRYAG 2 cut(s) 163, 511
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 3 cut(s) 137, 229, 354
SsiI CCGC 1 cut(s) 485
SspMI CTAG 2 cut(s) 299, 470
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 4 cut(s) 110, 164, 188, 430
TaiI ACGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 76
TasI AATT 3 cut(s) 137, 229, 354
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 2 cut(s) 490, 560
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 1 cut(s) 541
TseFI GTSAC 3 cut(s) 8, 284, 369
TseI GCWGC 1 cut(s) 522
Tsp45I GTSAC 3 cut(s) 8, 284, 369
TspRI CASTG 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 233
XbaI TCTAGA 2 cut(s) 298, 469
XspI CTAG 2 cut(s) 299, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.