Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010051

Physical Location & Seq

Genomic Coordinates Forward (+)

17473758 .. 17476284

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTGAAGAAGCGGCTTTGTTGCTGTGGGTGGTTCATAATTTTCTGTCATCTACTGCTAGCAGCTCTTGTTTTCTCCAAGAACCATGGAAACCCTGCAAATGATCTTGTTGAGATTATCAACAACAACCGAACAGCCCATAAACTTTCAAAACTAAATGACAGTCCTGGACTCGGGTGCATTGCGCTGCAATATGCCGAATTGTGCAAGGGAAACTGCTCTATCAACAACACTGTAAAATGCAAACCATCTGAAGATGACTTCACCGAAGTTTTTGCCCCCGATTGTGGTGTAGAACTACCAACTTTTGGCACCATAACTGGCCACATTGTGGGTTGCCAATCCAAGTATCTTGAGCCATCACTAGCCTTTGTACATGTTCTTGTTCGAGACAGCAAGGCTTTATCAATTCTGAGAAATAAATCACATACCGAGGTGGGTGTAGGCATGGTTCGGGTTCATAAAGGGCCATTCTTTTGGAGTGTTCTTTTCAGCAGTGGGAAGACAAACTCTACATTTGTTCTTGAAAATCGCGGTGCAGGGATCCAGCAAAAGAAAGGGTGCTATAGTGGAAGCAGCATACCATGCAGTGCAGGACAACAGAATGCTTCTCTGGTTTTGAACAATGTTATGATCATGGGTTTTCTATGCGTTGTTTATCTTTTGAAACAGTTTCACTTCAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.06

Weight (kDa)

8.88

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02180
fragaria_vesca	FvH4_7g08840 FvH4_7g08840 FvH4_7g08840 FvH4_7g08840
malus_domestica	MD02G1223300.v1.1 MD07G1091400.v1.1
prunus_persica	Prupe.2G116600_v2.0.a1
pyrus_communis	pycom07g07470
rosa_chinensis	RchiOBHm_Chr1g0344261
rosa_laevigata	RLG00000028914
rosa_multiflora	Rmu_co8335435.1_g000001 Rmu_sc0000019.1_g000008 Rmu_sc0014172.1_g000002
rosa_roxburghii	Rroxscaffold_4G00309970
rosa_rugosa	Rorug01G0172600
rosa_samantha	Rh1AG188500 Rh1BG154900 Rh1CG174300 Rh1DG187000
rosa_wichuraiana	Rw1G015530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccB7I	CCANNNNNTGG	2 cut(s)	308, 331
AccII	CGCG	1 cut(s)	534
AciI	CCGC	2 cut(s)	13, 534
AclWI	GGATC	2 cut(s)	538, 551
AcoI	YGGCCR	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	273
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	4 cut(s)	173, 287, 308, 331
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	5 cut(s)	150, 527, 622, 667, 682
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	538, 551
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	322, 467
ApeKI	GCWGC	3 cut(s)	62, 187, 576
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	2 cut(s)	16, 256
AsuNHI	GCTAGC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	74, 174, 588
BccI	CCATC	2 cut(s)	256, 367
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	1 cut(s)	168
BclI	TGATCA	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	2 cut(s)	59, 365
BfmI	CTRYAG	1 cut(s)	565
BisI	GCNGC	4 cut(s)	14, 63, 188, 577
BlsI	GCNGC	4 cut(s)	15, 64, 189, 578
Bme1390I	CCNGG	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	313, 545
BmrFI	CCNGG	1 cut(s)	168
BmtI	GCTAGC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	85, 432
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 287, 308, 331
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	85, 432
BseLI	CCNNNNNNNGG	4 cut(s)	173, 287, 308, 331
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	325
BseXI	GCAGC	3 cut(s)	74, 174, 588
BsgI	GTGCAG	2 cut(s)	558, 612
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	324, 469
BshNI	GGYRCC	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	173
BslI	CCNNNNNNNGG	4 cut(s)	173, 287, 308, 331
BsmAI	GTCTC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	324, 469
BsoBI	CYCGRG	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	103, 543, 633
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	2 cut(s)	13, 534
BspANI	GGCC	2 cut(s)	324, 469
BspCNI	CTCAG	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	2 cut(s)	313, 545
BspOI	GCTAGC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	538, 551
BspT107I	GGYRCC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	85, 432
BssMI	GATC	3 cut(s)	103, 543, 633
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	3 cut(s)	164, 235, 672
BstAPI	GCANNNNNTGC	1 cut(s)	585
BstAUI	TGTACA	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	106, 546, 636
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	3 cut(s)	103, 543, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	585
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	565
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	74, 174, 588
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	543
BstXI	CCANNNNNNTGG	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	324, 469
BtgI	CCRYGG	1 cut(s)	85
BtsI	GCAGTG	2 cut(s)	502, 595
BtsIMutI	CAGTG	3 cut(s)	231, 502, 595
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	5 cut(s)	86, 377, 448, 585, 637
CviJI	RGCY	8 cut(s)	16, 65, 137, 324, 358, 368, 401, 469
CviKI_1	RGCY	8 cut(s)	16, 65, 137, 324, 358, 368, 401, 469
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	3 cut(s)	105, 545, 635
DpnII	GATC	3 cut(s)	103, 543, 633
DraIII	CACNNNGTG	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	5 cut(s)	89, 380, 451, 588, 640
FatI	CATG	5 cut(s)	85, 376, 447, 584, 636
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	4 cut(s)	14, 63, 188, 577
Fsp4HI	GCNGC	4 cut(s)	14, 63, 188, 577
FspBI	CTAG	2 cut(s)	59, 365
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	14, 63, 188, 577
HaeIII	GGCC	2 cut(s)	324, 469
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	5 cut(s)	89, 380, 451, 588, 640
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	2 cut(s)	16, 256
Hpy188I	TCNGA	2 cut(s)	253, 414
Hpy188III	TCNNGA	3 cut(s)	353, 389, 524
HpyCH4III	ACNGT	3 cut(s)	164, 235, 672
HpyCH4V	TGCA	8 cut(s)	98, 180, 190, 207, 243, 539, 588, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	585
HpyF3I	CTNAG	1 cut(s)	413
Hsp92II	CATG	5 cut(s)	89, 380, 451, 588, 640
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	3 cut(s)	103, 543, 633
LpnPI	CCDG	8 cut(s)	108, 153, 180, 306, 525, 560, 579, 599
Lsp1109I	GCAGC	3 cut(s)	74, 174, 588
MaeI	CTAG	2 cut(s)	59, 365
MalI	GATC	3 cut(s)	105, 545, 635
MboI	GATC	3 cut(s)	103, 543, 633
MboII	GAAGA	3 cut(s)	19, 266, 514
MflI	RGATCY	1 cut(s)	543
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	4 cut(s)	39, 200, 408, 682
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	165
MnlI	CCTC	1 cut(s)	427
Mox20I	TGGCCA	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	585
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	3 cut(s)	103, 543, 633
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	5 cut(s)	89, 380, 451, 588, 640
NlaIV	GGNNCC	2 cut(s)	313, 545
NspI	RCATGY	1 cut(s)	380
PciI	ACATGT	1 cut(s)	376
PctI	GAATGC	1 cut(s)	610
PflMI	CCANNNNNTGG	2 cut(s)	308, 331
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	15, 64, 189, 578
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PscI	ACATGT	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	313, 545
PspPI	GGNCC	1 cut(s)	467
PsrI	GAACNNNNNNTAC	2 cut(s)	435, 467
PsuI	RGATCY	1 cut(s)	543
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SatI	GCNGC	4 cut(s)	14, 63, 188, 577
Sau3AI	GATC	3 cut(s)	103, 543, 633
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	2 cut(s)	67, 438
SfcI	CTRYAG	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	4 cut(s)	39, 200, 408, 682
SsiI	CCGC	2 cut(s)	13, 534
SspMI	CTAG	2 cut(s)	59, 365
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	3 cut(s)	164, 235, 672
TaqI	TCGA	1 cut(s)	388
TasI	AATT	4 cut(s)	39, 200, 408, 682
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	16
TscAI	CASTG	3 cut(s)	238, 502, 595
TseI	GCWGC	3 cut(s)	62, 187, 576
TspDTI	ATGAA	2 cut(s)	25, 449
TspRI	CASTG	3 cut(s)	238, 502, 595
Van91I	CCANNNNNTGG	2 cut(s)	308, 331
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	2 cut(s)	59, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.