FvH4_7g08840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010051
Physical Location & Seq
Forward (+)
8635906 .. 8639718
3813 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08840.t1

Sequence Viewer

Length: 669 bp
ATGGTGAAGCGGCTTTGTTGCTCTGGGTGGTTGGTTTTTAGCAGCTGTCTGCTGCTAGCTGCTCTTGTTTCCTCCAAGCACCATGGAAACCCTGCAAATGATCTTGTTGAGATTATCAACAATAATCGGACATCTCACAAGCTTTCCAAACTAAATGACAGTCCTGGACTTGGGTGTATGGCTCTGCAATTCGCTAAATCATGCAAGGGAAACTGCAGTAGGAATGGCACTATCAACTGTACACCATCTGAAGACGACTTCACCGAAGTGTTTGCCCCAAATTGTGGCGTTGAGCTACCCACTTTCGGCACCATAACTGGACACATTGTGGGTTGTCACTCCAAGTATCTAGAACCATCACTAGCTTTTATAAATGTTCTTGTTGGAAGCAACAAGGCTTTGTCAATTCTTCGGAATAGGTCGCATAATGAGGTGGGAGTCGGTATGGTTGGGGTTCACAAGGGGCCCTTCTTTTGGACTGTGCTCTTCAGTAGTGGGAAGCCAAACTCTACATTTGTTTTAGAAAATCGGGGTACAGGGATTCAGCAGAAGAAAGGTTGCTATAGTGGAAGCAGCATCCCTTGCAGTGCAGGACAAAAGATAGAAGCTGATTCTGTGATTTTCAACAATCTTGTGATCATTGATGCATGTTTTTTGAAATATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

23.91

Weight (kDa)

8.72

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 284
AciI CCGC 1 cut(s) 10
AcuI CTGAAG 2 cut(s) 270, 472
AdeI CACNNNGTG 1 cut(s) 328
AfaI GTAC 2 cut(s) 241, 535
AfiI CCNNNNNNNGG 4 cut(s) 170, 284, 305, 474
AgsI TTSAA 2 cut(s) 625, 658
AjnI CCWGG 1 cut(s) 163
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 6 cut(s) 45, 59, 142, 295, 365, 608
AluI AGCT 6 cut(s) 45, 59, 142, 295, 365, 608
Alw21I GWGCWC 1 cut(s) 486
AoxI GGCC 1 cut(s) 464
ApaI GGGCCC 1 cut(s) 468
ApeKI GCWGC 4 cut(s) 42, 52, 59, 573
AspS9I GGNCC 2 cut(s) 464, 465
AsuHPI GGTGA 2 cut(s) 16, 253
AsuNHI GCTAGC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 4 cut(s) 39, 46, 54, 585
BccI CCATC 2 cut(s) 253, 364
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 165
BclI TGATCA 1 cut(s) 636
BfaI CTAG 3 cut(s) 56, 350, 362
BfmI CTRYAG 2 cut(s) 214, 562
BisI GCNGC 5 cut(s) 11, 43, 53, 60, 574
BlsI GCNGC 5 cut(s) 12, 44, 54, 61, 575
Bme1390I CCNGG 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 464, 465
BmiI GGNNCC 3 cut(s) 310, 465, 466
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 585, 634
BmtI GCTAGC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 284, 305, 474
Bse1I ACTGG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 576
BseLI CCNNNNNNNGG 4 cut(s) 170, 284, 305, 474
BseNI ACTGG 1 cut(s) 322
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 4 cut(s) 39, 46, 54, 585
BsgI GTGCAG 1 cut(s) 609
BshFI GGCC 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 486
BslI CCNNNNNNNGG 4 cut(s) 170, 284, 305, 474
BsnI GGCC 1 cut(s) 466
Bsp120I GGGCCC 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 468, 486
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 2 cut(s) 100, 636
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 466
BspLI GGNNCC 3 cut(s) 310, 465, 466
BspMAI CTGCAG 1 cut(s) 218
BspOI GCTAGC 1 cut(s) 59
BspQI GCTCTTC 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 308
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 100, 636
BssT1I CCWWGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 161, 239, 481
Bst6I CTCTTC 1 cut(s) 491
BstAPI GCANNNNNTGC 1 cut(s) 582
BstAUI TGTACA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 576
BstKTI GATC 2 cut(s) 103, 639
BstMBI GATC 2 cut(s) 100, 636
BstMWI GCNNNNNNNGC 1 cut(s) 582
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 2 cut(s) 214, 562
BstSLI GKGCMC 1 cut(s) 468
BstV1I GCAGC 4 cut(s) 39, 46, 54, 585
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 466
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 576
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 1 cut(s) 592
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 464, 465
Csp6I GTAC 2 cut(s) 240, 534
CviAII CATG 3 cut(s) 83, 201, 648
CviQI GTAC 2 cut(s) 240, 534
DpnI GATC 2 cut(s) 102, 638
DpnII GATC 2 cut(s) 100, 636
DraIII CACNNNGTG 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 270, 472
EcoO109I RGGNCCY 2 cut(s) 464, 465
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 3 cut(s) 86, 204, 651
FaiI YATR 9 cut(s) 84, 179, 202, 314, 371, 426, 446, 564, 649
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FatI CATG 3 cut(s) 82, 200, 647
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 5 cut(s) 11, 43, 53, 60, 574
FokI GGATG 1 cut(s) 563
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 5 cut(s) 11, 43, 53, 60, 574
FspBI CTAG 3 cut(s) 56, 350, 362
GluI GCNGC 5 cut(s) 11, 43, 53, 60, 574
HaeIII GGCC 1 cut(s) 466
Hin1II CATG 3 cut(s) 86, 204, 651
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 3 cut(s) 438, 541, 611
HphI GGTGA 2 cut(s) 16, 253
Hpy166II GTNNAC 2 cut(s) 242, 457
Hpy188I TCNGA 3 cut(s) 129, 250, 414
Hpy188III TCNNGA 1 cut(s) 350
Hpy8I GTNNAC 2 cut(s) 242, 457
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 3 cut(s) 161, 239, 481
HpyCH4V TGCA 7 cut(s) 95, 187, 204, 216, 585, 590, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 582
Hsp92II CATG 3 cut(s) 86, 204, 651
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 2 cut(s) 100, 636
LguI GCTCTTC 1 cut(s) 491
LpnPI CCDG 7 cut(s) 9, 105, 150, 177, 303, 522, 576
Lsp1109I GCAGC 4 cut(s) 39, 46, 54, 585
LweI GCATC 2 cut(s) 585, 634
MaeI CTAG 3 cut(s) 56, 350, 362
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 102, 638
MboI GATC 2 cut(s) 100, 636
MboII GAAGA 4 cut(s) 263, 401, 478, 562
MhlI GDGCHC 2 cut(s) 468, 486
MluCI AATT 3 cut(s) 188, 280, 405
MlyI GAGTC 1 cut(s) 447
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 2 cut(s) 82, 424
Mph1103I ATGCAT 1 cut(s) 649
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 582
NcoI CCATGG 1 cut(s) 82
NdeII GATC 2 cut(s) 100, 636
NheI GCTAGC 1 cut(s) 55
NlaIII CATG 3 cut(s) 86, 204, 651
NlaIV GGNNCC 3 cut(s) 310, 465, 466
NmuCI GTSAC 1 cut(s) 335
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 1 cut(s) 651
OliI CACNNNNGTG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PfeI GAWTC 2 cut(s) 541, 611
PflMI CCANNNNNTGG 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 5 cut(s) 12, 44, 54, 61, 575
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PsiI TTATAA 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 310, 465, 466
PspOMI GGGCCC 1 cut(s) 464
PspPI GGNCC 2 cut(s) 464, 465
PstI CTGCAG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 2 cut(s) 241, 535
RsaNI GTAC 2 cut(s) 240, 534
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 491
SatI GCNGC 5 cut(s) 11, 43, 53, 60, 574
Sau3AI GATC 2 cut(s) 100, 636
Sau96I GGNCC 2 cut(s) 464, 465
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 2 cut(s) 468, 486
SetI ASST 9 cut(s) 47, 61, 144, 297, 367, 422, 435, 559, 610
SfaNI GCATC 2 cut(s) 585, 634
SfcI CTRYAG 2 cut(s) 214, 562
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 3 cut(s) 188, 280, 405
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 662
SspMI CTAG 3 cut(s) 56, 350, 362
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 3 cut(s) 161, 239, 481
TasI AATT 3 cut(s) 188, 280, 405
TatI WGTACW 1 cut(s) 239
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 2 cut(s) 541, 611
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 4 cut(s) 42, 52, 59, 573
Tsp45I GTSAC 1 cut(s) 335
TspRI CASTG 1 cut(s) 592
Van91I CCANNNNNTGG 1 cut(s) 284
XbaI TCTAGA 1 cut(s) 349
XceI RCATGY 1 cut(s) 651
XspI CTAG 3 cut(s) 56, 350, 362
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.