Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004970

Physical Location & Seq

Genomic Coordinates Forward (+)

490860 .. 492979

Gene Structure 2120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCGTGGTCGAAAGCTTGTAGAGGAACTCGAATTTCTTCATATTTAGAGAACCTTCATCGAACATCTCAGTATCCAAGGACTATTTTATGCTCTCGTTATTACACTCATGGAGCTTGTAAAAGCAATGAGCATTATCTCCGAAGCAAGAGAGTATTTTGGGGAAGCTCTTCTTCATGGAGCTTGAATTCTCACTCTGCTACTGCTAAATCGATGTTAGATAGTGCCCATCGCCAGTATTCTACTCACTCTCCATCGGAAACCAAATCACAGAAAATGCTCTATTACCTCACCGCTGTTGTCTTTGGTATGGTGGGGTTAACTTACGCTGCTGTGCCATTGTATAGAACATTCTGCCAAGCTACTGGATATGGAGGTACTGTTCAACGCAAAGAGACTGTTGAGGAGAAGATTGCTAGGCATTCAGAATCTGGTACCGTCACTGAAAGGGAGATTGTGGTGCAGTTCAATGCTGATGTTGCAGATGGGATGCAGTGGAAGTTCACTCCAACACAAAGAGAGGTTAGAGTAAAGCCAGGAGAAAGTGCACTCGCATTTTACACTGCTGAAAACAAAAGTTCAGCTCCAATAACCGGAGTCTCGACATACAATGTCACTCCCATGAAGGCAGGAGTTTATTTCAACAAGATACAATGTTTTTGCTTTGAGGAGCAGCGACTCCTTCCTGGAGAGCAGATTGACATGCCGGTCTTCTTCTACATTGATCCTGAGTTTGAGACTGATCCAAGAATGGACGGAATCAACAACTTGATATTGTCTTACACTTTCTTCAAAGTGTCAGAGGAAAATACTACAGAGACGGTCAACAATAACAACTCTGTTCCAGTTCAAGAAACCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009846 GO:0009856 GO:0009893 GO:0010015 GO:0010101 GO:0010155 GO:0016020 GO:0016021 GO:0019222 GO:0022414 GO:0022622 GO:0022898 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032592 GO:0032879 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043270 GO:0043467 GO:0043621 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051049 GO:0051050 GO:0051341 GO:0051353 GO:0051704 GO:0065007 GO:0065009 GO:0090696 GO:0090697 GO:0090698 GO:0098573 GO:0099402 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

CtaG_Cox11

Protein Analysis

287

Amino Acids

32.6

Weight (kDa)

8.13

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CtaG_Cox11	PF04442	111 - 265	3.6e-61	Cytochrome c oxidase assembly protein CtaG/Cox11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02410 AT1G02410 AT1G02410
malus_domestica	MD02G1272100.v1.1 MD07G1041100.v1.1
prunus_persica	Prupe.3G281100_v2.0.a1 Prupe.3G281100_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1
pyrus_communis	pycom02g23270 pycom07g02850
rosa_chinensis	RchiOBHm_Chr1g0359421 RchiOBHm_Chr3g0452351
rosa_laevigata	RLG00000025608 RLG00000027871
rosa_multiflora	Rmu_sc0010928.1_g000013 Rmu_ssc0000358.1_g000007
rosa_roxburghii	Rroxscaffold_4G00297020
rosa_rugosa	Rorug01G0271100 Rorug02G0640300
rosa_samantha	Rh1AG284500 Rh1BG250400 Rh1CG268500 Rh1DG279500 Rh3AG042000 Rh3CG042200
rosa_wichuraiana	Rw1G025270 Rw3G003210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	707
Acc65I	GGTACC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	434
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	2 cut(s)	719, 737
AcsI	RAATTY	2 cut(s)	33, 187
AfaI	GTAC	2 cut(s)	379, 436
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgsI	TTSAA	6 cut(s)	187, 386, 469, 643, 793, 851
AjnI	CCWGG	2 cut(s)	535, 685
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	6 cut(s)	17, 116, 168, 183, 362, 584
AluI	AGCT	6 cut(s)	17, 116, 168, 183, 362, 584
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	4 cut(s)	389, 604, 731, 812
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	719, 737
AlwNI	CAGNNNCTG	1 cut(s)	431
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	329, 673
ApoI	RAATTY	2 cut(s)	33, 187
Asp700I	GAANNNNTTC	2 cut(s)	37, 169
Asp718I	GGTACC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	283
BaeGI	GKGCMC	2 cut(s)	229, 550
BanI	GGYRCC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	2 cut(s)	316, 685
BccI	CCATC	3 cut(s)	237, 262, 479
BciT130I	CCWGG	2 cut(s)	537, 687
BciVI	GTATCC	1 cut(s)	84
BcoDI	GTCTC	4 cut(s)	389, 604, 731, 812
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	1 cut(s)	813
BfuI	GTATCC	1 cut(s)	84
BisI	GCNGC	2 cut(s)	330, 674
BlsI	GCNGC	2 cut(s)	331, 675
Bme1390I	CCNGG	2 cut(s)	537, 687
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	537, 687
BmsI	GCATC	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	703
BpmI	CTGGAG	1 cut(s)	708
Bsa29I	ATCGAT	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	4 cut(s)	235, 265, 366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	3 cut(s)	235, 370, 845
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	537, 687
BseCI	ATCGAT	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	83, 720
BseNI	ACTGG	3 cut(s)	235, 370, 845
BseRI	GAGGAG	2 cut(s)	419, 683
BseSI	GKGCMC	2 cut(s)	229, 550
BseXI	GCAGC	2 cut(s)	316, 685
BsgI	GTGCAG	1 cut(s)	482
BshNI	GGYRCC	1 cut(s)	434
BshVI	ATCGAT	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	2 cut(s)	594, 707
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	4 cut(s)	389, 604, 731, 812
BsmBI	CGTCTC	1 cut(s)	812
BsmI	GAATGC	1 cut(s)	421
Bsp1286I	GDGCHC	2 cut(s)	229, 550
Bsp143I	GATC	2 cut(s)	724, 742
BspACI	CCGC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	82, 721
BspDI	ATCGAT	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	719, 737
BspQI	GCTCTTC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	3 cut(s)	235, 370, 845
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	724, 742
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	537, 687
Bst4CI	ACNGT	4 cut(s)	382, 400, 439, 823
Bst6I	CTCTTC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	69, 729
BstF5I	GGATG	1 cut(s)	495
BstKTI	GATC	2 cut(s)	727, 745
BstMAI	GTCTC	4 cut(s)	389, 604, 731, 812
BstMBI	GATC	2 cut(s)	724, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstNI	CCWGG	2 cut(s)	537, 687
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	2 cut(s)	535, 685
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	2 cut(s)	229, 550
BstV1I	GCAGC	2 cut(s)	316, 685
BstV2I	GAAGAC	1 cut(s)	703
BstXI	CCANNNNNNTGG	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	212
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	495
BtsI	GCAGTG	2 cut(s)	500, 561
BtsIMutI	CAGTG	3 cut(s)	441, 500, 561
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	706
ClaI	ATCGAT	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	378, 435
CviAII	CATG	4 cut(s)	110, 177, 622, 703
CviJI	RGCY	7 cut(s)	17, 116, 168, 183, 362, 535, 584
CviKI_1	RGCY	7 cut(s)	17, 116, 168, 183, 362, 535, 584
CviQI	GTAC	2 cut(s)	378, 435
DdeI	CTNAG	2 cut(s)	69, 729
DpnI	GATC	2 cut(s)	726, 744
DpnII	GATC	2 cut(s)	724, 742
DrdI	GACNNNNNNGTC	1 cut(s)	707
DseDI	GACNNNNNNGTC	1 cut(s)	707
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	535, 685
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
Esp3I	CGTCTC	1 cut(s)	812
FaeI	CATG	4 cut(s)	113, 180, 625, 706
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FatI	CATG	4 cut(s)	109, 176, 621, 702
Fnu4HI	GCNGC	2 cut(s)	330, 674
FokI	GGATG	1 cut(s)	502
Fsp4HI	GCNGC	2 cut(s)	330, 674
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	2 cut(s)	330, 674
GsuI	CTGGAG	1 cut(s)	708
HapII	CCGG	2 cut(s)	594, 707
Hin1II	CATG	4 cut(s)	113, 180, 625, 706
HincII	GTYRAC	2 cut(s)	321, 826
HindII	GTYRAC	2 cut(s)	321, 826
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	4 cut(s)	428, 597, 678, 759
HpaI	GTTAAC	1 cut(s)	321
HpaII	CCGG	2 cut(s)	594, 707
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	4 cut(s)	321, 504, 548, 826
Hpy188I	TCNGA	4 cut(s)	143, 259, 427, 802
Hpy188III	TCNNGA	3 cut(s)	601, 728, 851
Hpy8I	GTNNAC	4 cut(s)	321, 504, 548, 826
HpyAV	CCTTC	3 cut(s)	65, 619, 692
HpyCH4III	ACNGT	4 cut(s)	382, 400, 439, 823
HpyCH4V	TGCA	4 cut(s)	463, 482, 493, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	2 cut(s)	69, 729
Hsp92II	CATG	4 cut(s)	113, 180, 625, 706
KpnI	GGTACC	1 cut(s)	438
KspAI	GTTAAC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	724, 742
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	4 cut(s)	113, 180, 589, 670
Lsp1109I	GCAGC	2 cut(s)	316, 685
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	439, 613
MalI	GATC	2 cut(s)	726, 744
MboI	GATC	2 cut(s)	724, 742
MboII	GAAGA	7 cut(s)	30, 162, 165, 421, 703, 706, 781
MhlI	GDGCHC	2 cut(s)	229, 550
MluCI	AATT	3 cut(s)	33, 187, 859
MlyI	GAGTC	2 cut(s)	606, 672
MmeI	TCCRAC	1 cut(s)	533
MnlI	CCTC	7 cut(s)	17, 299, 368, 397, 514, 661, 796
MroXI	GAANNNNTTC	2 cut(s)	37, 169
MseI	TTAA	2 cut(s)	320, 862
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	594, 707
MspR9I	CCNGG	2 cut(s)	537, 687
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	2 cut(s)	537, 687
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	2 cut(s)	724, 742
NlaIII	CATG	4 cut(s)	113, 180, 625, 706
NlaIV	GGNNCC	1 cut(s)	436
NmuCI	GTSAC	2 cut(s)	439, 613
NspI	RCATGY	1 cut(s)	706
PciSI	GCTCTTC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	2 cut(s)	37, 169
PfeI	GAWTC	2 cut(s)	428, 759
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	2 cut(s)	331, 675
PleI	GAGTC	2 cut(s)	605, 672
PpsI	GAGTC	2 cut(s)	605, 672
Psp6I	CCWGG	2 cut(s)	535, 685
PspGI	CCWGG	2 cut(s)	535, 685
PspN4I	GGNNCC	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	379, 436
RsaNI	GTAC	2 cut(s)	378, 435
RseI	CAYNNNNRTG	1 cut(s)	620
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	320, 862
SatI	GCNGC	2 cut(s)	330, 674
Sau3AI	GATC	2 cut(s)	724, 742
SchI	GAGTC	2 cut(s)	606, 672
ScrFI	CCNGG	2 cut(s)	537, 687
SduI	GDGCHC	2 cut(s)	229, 550
SfaNI	GCATC	1 cut(s)	480
SfcI	CTRYAG	1 cut(s)	813
SmiMI	CAYNNNNRTG	1 cut(s)	620
Sse9I	AATT	3 cut(s)	33, 187, 859
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	535, 685
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	4 cut(s)	382, 400, 439, 823
TaqI	TCGA	5 cut(s)	11, 31, 61, 212, 602
TasI	AATT	3 cut(s)	33, 187, 859
TfiI	GAWTC	2 cut(s)	428, 759
Tru1I	TTAA	2 cut(s)	320, 862
Tru9I	TTAA	2 cut(s)	320, 862
TscAI	CASTG	3 cut(s)	448, 500, 568
TseFI	GTSAC	2 cut(s)	439, 613
TseI	GCWGC	2 cut(s)	329, 673
Tsp45I	GTSAC	2 cut(s)	439, 613
TspDTI	ATGAA	4 cut(s)	30, 47, 165, 638
TspGWI	ACGGA	1 cut(s)	771
TspRI	CASTG	3 cut(s)	448, 500, 568
VneI	GTGCAC	1 cut(s)	546
XapI	RAATTY	2 cut(s)	33, 187
XceI	RCATGY	1 cut(s)	706
XmnI	GAANNNNTTC	2 cut(s)	37, 169
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.