Cytochrome c oxidase assembly protein COX11
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02410 AT1G02410 AT1G02410 |
| malus_domestica | MD02G1272100.v1.1 MD07G1041100.v1.1 |
| prunus_persica | Prupe.3G281100_v2.0.a1 Prupe.3G281100_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 |
| pyrus_communis | pycom02g23270 pycom07g02850 |
| rosa_chinensis | RchiOBHm_Chr1g0359421 RchiOBHm_Chr3g0452351 |
| rosa_laevigata | RLG00000025608 RLG00000027871 |
| rosa_multiflora | Rmu_sc0010928.1_g000013 Rmu_ssc0000358.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00297020 |
| rosa_rugosa | Rorug01G0271100 Rorug02G0640300 |
| rosa_samantha | Rh1AG284500 Rh1BG250400 Rh1CG268500 Rh1DG279500 Rh3AG042000 Rh3CG042200 |
| rosa_wichuraiana | Rw1G025270 Rw3G003210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1095 |
| AccI | GTMKAC | 1 cut(s) | 701 |
| AccII | CGCG | 3 cut(s) | 506, 738, 1148 |
| AciI | CCGC | 4 cut(s) | 504, 506, 992, 1054 |
| AclWI | GGATC | 1 cut(s) | 46 |
| AcoI | YGGCCR | 1 cut(s) | 1097 |
| AcsI | RAATTY | 2 cut(s) | 829, 1105 |
| AcuI | CTGAAG | 2 cut(s) | 462, 903 |
| AfaI | GTAC | 3 cut(s) | 345, 556, 725 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 249, 507, 851, 1095 |
| AgeI | ACCGGT | 1 cut(s) | 788 |
| AgsI | TTSAA | 5 cut(s) | 134, 332, 638, 806, 1111 |
| AjnI | CCWGG | 3 cut(s) | 346, 727, 754 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 165, 197, 858, 890, 1151, 1183 |
| AleI | CACNNNNGTG | 1 cut(s) | 98 |
| AluBI | AGCT | 6 cut(s) | 137, 293, 323, 440, 466, 1310 |
| AluI | AGCT | 6 cut(s) | 137, 293, 323, 440, 466, 1310 |
| Alw21I | GWGCWC | 1 cut(s) | 1312 |
| Alw26I | GTCTC | 3 cut(s) | 936, 1002, 1157 |
| AlwI | GGATC | 1 cut(s) | 46 |
| AoxI | GGCC | 7 cut(s) | 78, 127, 169, 650, 853, 862, 1097 |
| ApeKI | GCWGC | 5 cut(s) | 278, 323, 686, 815, 841 |
| ApoI | RAATTY | 2 cut(s) | 829, 1105 |
| AsiGI | ACCGGT | 1 cut(s) | 788 |
| AspLEI | GCGC | 1 cut(s) | 1150 |
| AspS9I | GGNCC | 1 cut(s) | 127 |
| AsuHPI | GGTGA | 4 cut(s) | 176, 280, 468, 1022 |
| AsuII | TTCGAA | 1 cut(s) | 60 |
| BalI | TGGCCA | 1 cut(s) | 1099 |
| BanII | GRGCYC | 1 cut(s) | 1312 |
| Bbv12I | GWGCWC | 1 cut(s) | 1312 |
| BbvI | GCAGC | 5 cut(s) | 265, 310, 698, 802, 828 |
| BccI | CCATC | 2 cut(s) | 305, 845 |
| BciT130I | CCWGG | 3 cut(s) | 348, 729, 756 |
| BciVI | GTATCC | 1 cut(s) | 979 |
| BcoDI | GTCTC | 3 cut(s) | 936, 1002, 1157 |
| BfaI | CTAG | 4 cut(s) | 111, 159, 210, 713 |
| BfuI | GTATCC | 1 cut(s) | 979 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 168, 861 |
| BisI | GCNGC | 5 cut(s) | 279, 324, 687, 816, 842 |
| BlsI | GCNGC | 5 cut(s) | 280, 325, 688, 817, 843 |
| BmcAI | AGTACT | 1 cut(s) | 556 |
| Bme1390I | CCNGG | 3 cut(s) | 348, 729, 756 |
| BmgT120I | GGNCC | 1 cut(s) | 127 |
| BmiI | GGNNCC | 2 cut(s) | 128, 1196 |
| BmrFI | CCNGG | 3 cut(s) | 348, 729, 756 |
| BpmI | CTGGAG | 1 cut(s) | 446 |
| Bpu10I | CCTNAGC | 1 cut(s) | 572 |
| Bpu14I | TTCGAA | 1 cut(s) | 60 |
| BpuEI | CTTGAG | 2 cut(s) | 605, 984 |
| BsaJI | CCNNGG | 4 cut(s) | 479, 504, 727, 754 |
| BsaWI | WCCGGW | 1 cut(s) | 788 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 249, 507, 851, 1095 |
| Bse118I | RCCGGY | 1 cut(s) | 788 |
| Bse1I | ACTGG | 1 cut(s) | 1238 |
| Bse3DI | GCAATG | 2 cut(s) | 696, 836 |
| BseBI | CCWGG | 3 cut(s) | 348, 729, 756 |
| BseDI | CCNNGG | 4 cut(s) | 479, 504, 727, 754 |
| BseGI | GGATG | 1 cut(s) | 497 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 249, 507, 851, 1095 |
| BseMI | GCAATG | 2 cut(s) | 696, 836 |
| BseMII | CTCAG | 2 cut(s) | 180, 563 |
| BseNI | ACTGG | 1 cut(s) | 1238 |
| BseRI | GAGGAG | 1 cut(s) | 449 |
| BseXI | GCAGC | 5 cut(s) | 265, 310, 698, 802, 828 |
| Bsh1236I | CGCG | 3 cut(s) | 506, 738, 1148 |
| BshFI | GGCC | 7 cut(s) | 80, 129, 171, 652, 855, 864, 1099 |
| BshTI | ACCGGT | 1 cut(s) | 788 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1312 |
| BsiSI | CCGG | 1 cut(s) | 789 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 249, 507, 851, 1095 |
| BsmAI | GTCTC | 3 cut(s) | 936, 1002, 1157 |
| BsmBI | CGTCTC | 2 cut(s) | 936, 1157 |
| BsmI | GAATGC | 3 cut(s) | 407, 700, 931 |
| BsnI | GGCC | 7 cut(s) | 80, 129, 171, 652, 855, 864, 1099 |
| Bsp119I | TTCGAA | 1 cut(s) | 60 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1312 |
| Bsp143I | GATC | 3 cut(s) | 38, 246, 532 |
| BspACI | CCGC | 4 cut(s) | 504, 506, 992, 1054 |
| BspANI | GGCC | 7 cut(s) | 80, 129, 171, 652, 855, 864, 1099 |
| BspCNI | CTCAG | 2 cut(s) | 179, 564 |
| BspFNI | CGCG | 3 cut(s) | 506, 738, 1148 |
| BspHI | TCATGA | 1 cut(s) | 1219 |
| BspLI | GGNNCC | 2 cut(s) | 128, 1196 |
| BspPI | GGATC | 1 cut(s) | 46 |
| BspT104I | TTCGAA | 1 cut(s) | 60 |
| BsrDI | GCAATG | 2 cut(s) | 696, 836 |
| BsrFI | RCCGGY | 1 cut(s) | 788 |
| BsrI | ACTGG | 1 cut(s) | 1238 |
| BssAI | RCCGGY | 1 cut(s) | 788 |
| BssECI | CCNNGG | 4 cut(s) | 479, 504, 727, 754 |
| BssMI | GATC | 3 cut(s) | 38, 246, 532 |
| BssNAI | GTATAC | 1 cut(s) | 702 |
| BssT1I | CCWWGG | 1 cut(s) | 479 |
| Bst1107I | GTATAC | 1 cut(s) | 702 |
| Bst2UI | CCWGG | 3 cut(s) | 348, 729, 756 |
| Bst4CI | ACNGT | 4 cut(s) | 67, 97, 1123, 1334 |
| Bst6I | CTCTTC | 3 cut(s) | 116, 573, 879 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 695, 1062 |
| BstBI | TTCGAA | 1 cut(s) | 60 |
| BstC8I | GCNNGC | 2 cut(s) | 407, 797 |
| BstDEI | CTNAG | 4 cut(s) | 15, 166, 551, 572 |
| BstDSI | CCRYGG | 1 cut(s) | 504 |
| BstF5I | GGATG | 1 cut(s) | 497 |
| BstFNI | CGCG | 3 cut(s) | 506, 738, 1148 |
| BstHHI | GCGC | 1 cut(s) | 1150 |
| BstKTI | GATC | 3 cut(s) | 41, 249, 535 |
| BstMAI | GTCTC | 3 cut(s) | 936, 1002, 1157 |
| BstMBI | GATC | 3 cut(s) | 38, 246, 532 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 168, 206, 215, 224, 695, 861, 953, 1062, 1091 |
| BstNI | CCWGG | 3 cut(s) | 348, 729, 756 |
| BstNSI | RCATGY | 1 cut(s) | 1246 |
| BstSCI | CCNGG | 3 cut(s) | 346, 727, 754 |
| BstUI | CGCG | 3 cut(s) | 506, 738, 1148 |
| BstV1I | GCAGC | 5 cut(s) | 265, 310, 698, 802, 828 |
| BstZ17I | GTATAC | 1 cut(s) | 702 |
| BsuI | GTATCC | 1 cut(s) | 979 |
| BsuRI | GGCC | 7 cut(s) | 80, 129, 171, 652, 855, 864, 1099 |
| BtgI | CCRYGG | 1 cut(s) | 504 |
| BtgZI | GCGATG | 1 cut(s) | 674 |
| BtsCI | GGATG | 1 cut(s) | 497 |
| BtsI | GCAGTG | 1 cut(s) | 1253 |
| BtsIMutI | CAGTG | 3 cut(s) | 93, 1253, 1339 |
| Cac8I | GCNNGC | 2 cut(s) | 407, 797 |
| CciI | TCATGA | 1 cut(s) | 1219 |
| CfoI | GCGC | 1 cut(s) | 1150 |
| Cfr10I | RCCGGY | 1 cut(s) | 788 |
| Cfr13I | GGNCC | 1 cut(s) | 127 |
| Cfr42I | CCGCGG | 1 cut(s) | 507 |
| CseI | GACGC | 2 cut(s) | 727, 953 |
| Csp6I | GTAC | 3 cut(s) | 344, 555, 724 |
| CspAI | ACCGGT | 1 cut(s) | 788 |
| CviAII | CATG | 5 cut(s) | 962, 1095, 1220, 1243, 1252 |
| CviQI | GTAC | 3 cut(s) | 344, 555, 724 |
| DdeI | CTNAG | 4 cut(s) | 15, 166, 551, 572 |
| DpnI | GATC | 3 cut(s) | 40, 248, 534 |
| DpnII | GATC | 3 cut(s) | 38, 246, 532 |
| DraI | TTTAAA | 1 cut(s) | 319 |
| EaeI | YGGCCR | 1 cut(s) | 1097 |
| Eam1104I | CTCTTC | 3 cut(s) | 116, 573, 879 |
| EarI | CTCTTC | 3 cut(s) | 116, 573, 879 |
| Ecl136II | GAGCTC | 1 cut(s) | 1310 |
| Eco130I | CCWWGG | 1 cut(s) | 479 |
| Eco24I | GRGCYC | 1 cut(s) | 1312 |
| Eco53kI | GAGCTC | 1 cut(s) | 1310 |
| Eco57I | CTGAAG | 2 cut(s) | 462, 903 |
| EcoICRI | GAGCTC | 1 cut(s) | 1310 |
| EcoO109I | RGGNCCY | 1 cut(s) | 127 |
| EcoRII | CCWGG | 3 cut(s) | 346, 727, 754 |
| EcoT14I | CCWWGG | 1 cut(s) | 479 |
| EcoT22I | ATGCAT | 1 cut(s) | 1096 |
| EcoT38I | GRGCYC | 1 cut(s) | 1312 |
| ErhI | CCWWGG | 1 cut(s) | 479 |
| Esp3I | CGTCTC | 2 cut(s) | 936, 1157 |
| FaeI | CATG | 5 cut(s) | 965, 1098, 1223, 1246, 1255 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 534, 566 |
| FatI | CATG | 5 cut(s) | 961, 1094, 1219, 1242, 1251 |
| FauI | CCCGC | 1 cut(s) | 499 |
| FauNDI | CATATG | 1 cut(s) | 952 |
| FblI | GTMKAC | 1 cut(s) | 701 |
| Fnu4HI | GCNGC | 5 cut(s) | 279, 324, 687, 816, 842 |
| FokI | GGATG | 1 cut(s) | 484 |
| FriOI | GRGCYC | 1 cut(s) | 1312 |
| Fsp4HI | GCNGC | 5 cut(s) | 279, 324, 687, 816, 842 |
| FspBI | CTAG | 4 cut(s) | 111, 159, 210, 713 |
| GlaI | GCGC | 1 cut(s) | 1149 |
| GluI | GCNGC | 5 cut(s) | 279, 324, 687, 816, 842 |
| GsuI | CTGGAG | 1 cut(s) | 446 |
| HaeIII | GGCC | 7 cut(s) | 80, 129, 171, 652, 855, 864, 1099 |
| HapII | CCGG | 1 cut(s) | 789 |
| HgaI | GACGC | 2 cut(s) | 727, 953 |
| HhaI | GCGC | 1 cut(s) | 1150 |
| Hin1II | CATG | 5 cut(s) | 965, 1098, 1223, 1246, 1255 |
| Hin6I | GCGC | 1 cut(s) | 1148 |
| HinP1I | GCGC | 1 cut(s) | 1148 |
| HincII | GTYRAC | 4 cut(s) | 105, 393, 742, 1075 |
| HindII | GTYRAC | 4 cut(s) | 105, 393, 742, 1075 |
| HpaI | GTTAAC | 2 cut(s) | 105, 393 |
| HpaII | CCGG | 1 cut(s) | 789 |
| HphI | GGTGA | 4 cut(s) | 176, 280, 468, 1022 |
| Hpy166II | GTNNAC | 7 cut(s) | 105, 271, 393, 632, 702, 742, 1075 |
| Hpy188I | TCNGA | 6 cut(s) | 56, 472, 883, 1314, 1323, 1349 |
| Hpy188III | TCNNGA | 7 cut(s) | 250, 565, 826, 941, 1001, 1220, 1277 |
| Hpy8I | GTNNAC | 7 cut(s) | 105, 271, 393, 632, 702, 742, 1075 |
| HpyAV | CCTTC | 4 cut(s) | 663, 803, 1001, 1153 |
| HpyCH4III | ACNGT | 4 cut(s) | 67, 97, 1123, 1334 |
| HpyCH4IV | ACGT | 1 cut(s) | 1166 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 168, 206, 215, 224, 695, 861, 953, 1062, 1091 |
| HpyF3I | CTNAG | 4 cut(s) | 15, 166, 551, 572 |
| HpySE526I | ACGT | 1 cut(s) | 1166 |
| Hsp92II | CATG | 5 cut(s) | 965, 1098, 1223, 1246, 1255 |
| HspAI | GCGC | 1 cut(s) | 1148 |
| KspAI | GTTAAC | 2 cut(s) | 105, 393 |
| KspI | CCGCGG | 1 cut(s) | 507 |
| Kzo9I | GATC | 3 cut(s) | 38, 246, 532 |
| LmnI | GCTCC | 2 cut(s) | 290, 1090 |
| Lsp1109I | GCAGC | 5 cut(s) | 265, 310, 698, 802, 828 |
| MaeI | CTAG | 4 cut(s) | 111, 159, 210, 713 |
| MaeII | ACGT | 1 cut(s) | 1166 |
| MaeIII | GTNAC | 2 cut(s) | 31, 1177 |
| MalI | GATC | 3 cut(s) | 40, 248, 534 |
| MboI | GATC | 3 cut(s) | 38, 246, 532 |
| MboII | GAAGA | 6 cut(s) | 133, 410, 590, 818, 896, 1016 |
| MfeI | CAATTG | 1 cut(s) | 327 |
| MhlI | GDGCHC | 1 cut(s) | 1312 |
| MlsI | TGGCCA | 1 cut(s) | 1099 |
| MluNI | TGGCCA | 1 cut(s) | 1099 |
| MlyI | GAGTC | 2 cut(s) | 1174, 1309 |
| MmeI | TCCRAC | 1 cut(s) | 1149 |
| Mox20I | TGGCCA | 1 cut(s) | 1099 |
| Mph1103I | ATGCAT | 1 cut(s) | 1096 |
| MscI | TGGCCA | 1 cut(s) | 1099 |
| MseI | TTAA | 8 cut(s) | 104, 318, 392, 489, 515, 599, 782, 1032 |
| MslI | CAYNNNNRTG | 3 cut(s) | 98, 266, 1224 |
| Msp20I | TGGCCA | 1 cut(s) | 1099 |
| MspA1I | CMGCKG | 3 cut(s) | 440, 506, 994 |
| MspI | CCGG | 1 cut(s) | 789 |
| MspR9I | CCNGG | 3 cut(s) | 348, 729, 756 |
| MunI | CAATTG | 1 cut(s) | 327 |
| Mva1269I | GAATGC | 3 cut(s) | 407, 700, 931 |
| MvaI | CCWGG | 3 cut(s) | 348, 729, 756 |
| MvnI | CGCG | 3 cut(s) | 506, 738, 1148 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 168, 206, 215, 224, 695, 861, 953, 1062, 1091 |
| NdeI | CATATG | 1 cut(s) | 952 |
| NdeII | GATC | 3 cut(s) | 38, 246, 532 |
| NlaIII | CATG | 5 cut(s) | 965, 1098, 1223, 1246, 1255 |
| NlaIV | GGNNCC | 2 cut(s) | 128, 1196 |
| NmuCI | GTSAC | 2 cut(s) | 31, 1177 |
| NsiI | ATGCAT | 1 cut(s) | 1096 |
| NspI | RCATGY | 1 cut(s) | 1246 |
| NspV | TTCGAA | 1 cut(s) | 60 |
| OliI | CACNNNNGTG | 1 cut(s) | 98 |
| PagI | TCATGA | 1 cut(s) | 1219 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 255 |
| PctI | GAATGC | 3 cut(s) | 407, 700, 931 |
| PfeI | GAWTC | 8 cut(s) | 8, 51, 57, 90, 155, 332, 473, 709 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1095 |
| PinAI | ACCGGT | 1 cut(s) | 788 |
| PkrI | GCNGC | 5 cut(s) | 280, 325, 688, 817, 843 |
| PleI | GAGTC | 2 cut(s) | 1174, 1309 |
| PpsI | GAGTC | 2 cut(s) | 1174, 1309 |
| Psp124BI | GAGCTC | 1 cut(s) | 1312 |
| Psp6I | CCWGG | 3 cut(s) | 346, 727, 754 |
| PspGI | CCWGG | 3 cut(s) | 346, 727, 754 |
| PspN4I | GGNNCC | 2 cut(s) | 128, 1196 |
| PspPI | GGNCC | 1 cut(s) | 127 |
| PvuII | CAGCTG | 1 cut(s) | 440 |
| RsaI | GTAC | 3 cut(s) | 345, 556, 725 |
| RsaNI | GTAC | 3 cut(s) | 344, 555, 724 |
| RseI | CAYNNNNRTG | 3 cut(s) | 98, 266, 1224 |
| SacI | GAGCTC | 1 cut(s) | 1312 |
| SacII | CCGCGG | 1 cut(s) | 507 |
| SaqAI | TTAA | 8 cut(s) | 104, 318, 392, 489, 515, 599, 782, 1032 |
| SatI | GCNGC | 5 cut(s) | 279, 324, 687, 816, 842 |
| Sau3AI | GATC | 3 cut(s) | 38, 246, 532 |
| Sau96I | GGNCC | 1 cut(s) | 127 |
| ScaI | AGTACT | 1 cut(s) | 556 |
| SchI | GAGTC | 2 cut(s) | 1174, 1309 |
| ScrFI | CCNGG | 3 cut(s) | 348, 729, 756 |
| SduI | GDGCHC | 1 cut(s) | 1312 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 861 |
| Sfr303I | CCGCGG | 1 cut(s) | 507 |
| SfuI | TTCGAA | 1 cut(s) | 60 |
| SgrBI | CCGCGG | 1 cut(s) | 507 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 98, 266, 1224 |
| SmlI | CTYRAG | 2 cut(s) | 620, 999 |
| SmoI | CTYRAG | 2 cut(s) | 620, 999 |
| SsiI | CCGC | 4 cut(s) | 504, 506, 992, 1054 |
| SspI | AATATT | 2 cut(s) | 597, 896 |
| SspMI | CTAG | 4 cut(s) | 111, 159, 210, 713 |
| SstI | GAGCTC | 1 cut(s) | 1312 |
| StyD4I | CCNGG | 3 cut(s) | 346, 727, 754 |
| StyI | CCWWGG | 1 cut(s) | 479 |
| TaaI | ACNGT | 4 cut(s) | 67, 97, 1123, 1334 |
| TaiI | ACGT | 1 cut(s) | 1169 |
| TaqI | TCGA | 5 cut(s) | 60, 258, 535, 564, 940 |
| TaqII | GACCGA | 1 cut(s) | 867 |
| TatI | WGTACW | 1 cut(s) | 554 |
| TfiI | GAWTC | 8 cut(s) | 8, 51, 57, 90, 155, 332, 473, 709 |
| Tru1I | TTAA | 8 cut(s) | 104, 318, 392, 489, 515, 599, 782, 1032 |
| Tru9I | TTAA | 8 cut(s) | 104, 318, 392, 489, 515, 599, 782, 1032 |
| TscAI | CASTG | 3 cut(s) | 100, 1253, 1339 |
| TseFI | GTSAC | 2 cut(s) | 31, 1177 |
| TseI | GCWGC | 5 cut(s) | 278, 323, 686, 815, 841 |
| Tsp45I | GTSAC | 2 cut(s) | 31, 1177 |
| TspRI | CASTG | 3 cut(s) | 100, 1253, 1339 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1095 |
| XapI | RAATTY | 2 cut(s) | 829, 1105 |
| XceI | RCATGY | 1 cut(s) | 1246 |
| XmiI | GTMKAC | 1 cut(s) | 701 |
| XspI | CTAG | 4 cut(s) | 111, 159, 210, 713 |
| ZrmI | AGTACT | 1 cut(s) | 556 |
| Zsp2I | ATGCAT | 1 cut(s) | 1096 |