Rorug01G0271100

Cytochrome c oxidase assembly protein COX11

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
38352600 .. 38375567
22968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0271100.1

Sequence Viewer

Length: 1350 bp
ATGGCAGAATCAACTAAGAGGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTCGAAACTGTAAGGCAGTTGGCCTCAAAGGGAATCACTGTGGTGTTAACTGCTAGAGATGAGAAGAGGGGCCTTGAAGCTGTTGAGAAACTGAAAGAATCTAGCCTCTCAGGCCAAGTAGTTTTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTGCTTCTCTGGCACAATTCATCAAAACCCAGATCGGGAAACTCGACATTTTGGTGAACAATGCTGCGATTTTTGGAGCTATAATTGATAATACTGATGGTTTTAAAGCTGCAATTGAATCTGGTGCTGTACCAGGACAGATTGATTATACAAAGTTGCTGACTGAAACTTATGAGTTAACAGAAGAATGCTTGCAAATCAATTATTATGGTGCTAAAAGAACAGCTGAAGCACTAATTCCACTCCTCCAGCTATCTGATTCACCAAGGATTGTTAATGTTTCATCCTCCGCGGGGAAGTTAAAGAACATACCAAGTGATCGAGTGAAAGGAGTTCTTAGTACTGATGTCGAGAACCTGAGCGAAGAGAGTGTAGATGAAATATTAACAGAGTTTCTAAACGACCTCAAGGAGAGTTTACTTGAAAGCAAGGGTTGGCCTTCTGCGATGTCAGGCTATATACTCTCAAAAGCAGCAATGAATGCGTATACAAGGATTCTAGCCAAGAAGTACCCTGGTTTTCGCGTCAACTTTGTCTGCCCTGGCTATGCCAAAACAGATATAAACTTAAATACCGGTGGCTTGCCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTAATGATGGCCTCACAGGCCAATTTTTTTTTCGGTCTGAAGAGAAAAAATATTCCTTTATCCTTGCAAATTGCTATTGGAATGCTGTGCTAATTCGAGACGCTTCATATGCAGACCATGAAGTATCCTCGTCAATCCTCTCTATTCCGCTGTCTCAAGAAGAAGGTGATAAAGTGGTCTGGCACTTTAACAAGAATGATAAACTTGACCGCACAGACTGCATACAAGTCAACTCAAACGCTCCCAATGCATGGCCAACAAATTTGAAATCCCAAACTGTAATCTCAAATCTCAAAAGACACGCGCTTCCAATGAAGGAGACGTTGGAATATGTGACTCACAATATGTGGTTCCCTATTTACAGCCCTCTTATTCATGAAAATGAGGACTGGTATCACATGCAGTGCATGACTTGTGCCAAGCAACTTATTCTTGATACAACTTCCTCAATTCATAATTTACGAGCTCTGACTCATCTGATTGGAAACAGTGATAATGCCCTCTGA

Protein Analysis

449

Amino Acids

49.56

Weight (kDa)

5.5

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 173 1.5e-26 short chain dehydrogenase
KR PF08659 10 - 96 6.2e-06 KR domain
adh_short_C2 PF13561 15 - 177 7.2e-18 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1095
AccI GTMKAC 1 cut(s) 701
AccII CGCG 3 cut(s) 506, 738, 1148
AciI CCGC 4 cut(s) 504, 506, 992, 1054
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 1097
AcsI RAATTY 2 cut(s) 829, 1105
AcuI CTGAAG 2 cut(s) 462, 903
AfaI GTAC 3 cut(s) 345, 556, 725
AfiI CCNNNNNNNGG 4 cut(s) 249, 507, 851, 1095
AgeI ACCGGT 1 cut(s) 788
AgsI TTSAA 5 cut(s) 134, 332, 638, 806, 1111
AjnI CCWGG 3 cut(s) 346, 727, 754
AjuI GAANNNNNNNTTGG 6 cut(s) 165, 197, 858, 890, 1151, 1183
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 6 cut(s) 137, 293, 323, 440, 466, 1310
AluI AGCT 6 cut(s) 137, 293, 323, 440, 466, 1310
Alw21I GWGCWC 1 cut(s) 1312
Alw26I GTCTC 3 cut(s) 936, 1002, 1157
AlwI GGATC 1 cut(s) 46
AoxI GGCC 7 cut(s) 78, 127, 169, 650, 853, 862, 1097
ApeKI GCWGC 5 cut(s) 278, 323, 686, 815, 841
ApoI RAATTY 2 cut(s) 829, 1105
AsiGI ACCGGT 1 cut(s) 788
AspLEI GCGC 1 cut(s) 1150
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 4 cut(s) 176, 280, 468, 1022
AsuII TTCGAA 1 cut(s) 60
BalI TGGCCA 1 cut(s) 1099
BanII GRGCYC 1 cut(s) 1312
Bbv12I GWGCWC 1 cut(s) 1312
BbvI GCAGC 5 cut(s) 265, 310, 698, 802, 828
BccI CCATC 2 cut(s) 305, 845
BciT130I CCWGG 3 cut(s) 348, 729, 756
BciVI GTATCC 1 cut(s) 979
BcoDI GTCTC 3 cut(s) 936, 1002, 1157
BfaI CTAG 4 cut(s) 111, 159, 210, 713
BfuI GTATCC 1 cut(s) 979
BglI GCCNNNNNGGC 2 cut(s) 168, 861
BisI GCNGC 5 cut(s) 279, 324, 687, 816, 842
BlsI GCNGC 5 cut(s) 280, 325, 688, 817, 843
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 3 cut(s) 348, 729, 756
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 128, 1196
BmrFI CCNGG 3 cut(s) 348, 729, 756
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 572
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 605, 984
BsaJI CCNNGG 4 cut(s) 479, 504, 727, 754
BsaWI WCCGGW 1 cut(s) 788
Bsc4I CCNNNNNNNGG 4 cut(s) 249, 507, 851, 1095
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 1238
Bse3DI GCAATG 2 cut(s) 696, 836
BseBI CCWGG 3 cut(s) 348, 729, 756
BseDI CCNNGG 4 cut(s) 479, 504, 727, 754
BseGI GGATG 1 cut(s) 497
BseLI CCNNNNNNNGG 4 cut(s) 249, 507, 851, 1095
BseMI GCAATG 2 cut(s) 696, 836
BseMII CTCAG 2 cut(s) 180, 563
BseNI ACTGG 1 cut(s) 1238
BseRI GAGGAG 1 cut(s) 449
BseXI GCAGC 5 cut(s) 265, 310, 698, 802, 828
Bsh1236I CGCG 3 cut(s) 506, 738, 1148
BshFI GGCC 7 cut(s) 80, 129, 171, 652, 855, 864, 1099
BshTI ACCGGT 1 cut(s) 788
BsiHKAI GWGCWC 1 cut(s) 1312
BsiSI CCGG 1 cut(s) 789
BslI CCNNNNNNNGG 4 cut(s) 249, 507, 851, 1095
BsmAI GTCTC 3 cut(s) 936, 1002, 1157
BsmBI CGTCTC 2 cut(s) 936, 1157
BsmI GAATGC 3 cut(s) 407, 700, 931
BsnI GGCC 7 cut(s) 80, 129, 171, 652, 855, 864, 1099
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 1312
Bsp143I GATC 3 cut(s) 38, 246, 532
BspACI CCGC 4 cut(s) 504, 506, 992, 1054
BspANI GGCC 7 cut(s) 80, 129, 171, 652, 855, 864, 1099
BspCNI CTCAG 2 cut(s) 179, 564
BspFNI CGCG 3 cut(s) 506, 738, 1148
BspHI TCATGA 1 cut(s) 1219
BspLI GGNNCC 2 cut(s) 128, 1196
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 2 cut(s) 696, 836
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 1 cut(s) 1238
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 4 cut(s) 479, 504, 727, 754
BssMI GATC 3 cut(s) 38, 246, 532
BssNAI GTATAC 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 479
Bst1107I GTATAC 1 cut(s) 702
Bst2UI CCWGG 3 cut(s) 348, 729, 756
Bst4CI ACNGT 4 cut(s) 67, 97, 1123, 1334
Bst6I CTCTTC 3 cut(s) 116, 573, 879
BstAPI GCANNNNNTGC 2 cut(s) 695, 1062
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 407, 797
BstDEI CTNAG 4 cut(s) 15, 166, 551, 572
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 1 cut(s) 497
BstFNI CGCG 3 cut(s) 506, 738, 1148
BstHHI GCGC 1 cut(s) 1150
BstKTI GATC 3 cut(s) 41, 249, 535
BstMAI GTCTC 3 cut(s) 936, 1002, 1157
BstMBI GATC 3 cut(s) 38, 246, 532
BstMWI GCNNNNNNNGC 9 cut(s) 168, 206, 215, 224, 695, 861, 953, 1062, 1091
BstNI CCWGG 3 cut(s) 348, 729, 756
BstNSI RCATGY 1 cut(s) 1246
BstSCI CCNGG 3 cut(s) 346, 727, 754
BstUI CGCG 3 cut(s) 506, 738, 1148
BstV1I GCAGC 5 cut(s) 265, 310, 698, 802, 828
BstZ17I GTATAC 1 cut(s) 702
BsuI GTATCC 1 cut(s) 979
BsuRI GGCC 7 cut(s) 80, 129, 171, 652, 855, 864, 1099
BtgI CCRYGG 1 cut(s) 504
BtgZI GCGATG 1 cut(s) 674
BtsCI GGATG 1 cut(s) 497
BtsI GCAGTG 1 cut(s) 1253
BtsIMutI CAGTG 3 cut(s) 93, 1253, 1339
Cac8I GCNNGC 2 cut(s) 407, 797
CciI TCATGA 1 cut(s) 1219
CfoI GCGC 1 cut(s) 1150
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 1 cut(s) 127
Cfr42I CCGCGG 1 cut(s) 507
CseI GACGC 2 cut(s) 727, 953
Csp6I GTAC 3 cut(s) 344, 555, 724
CspAI ACCGGT 1 cut(s) 788
CviAII CATG 5 cut(s) 962, 1095, 1220, 1243, 1252
CviQI GTAC 3 cut(s) 344, 555, 724
DdeI CTNAG 4 cut(s) 15, 166, 551, 572
DpnI GATC 3 cut(s) 40, 248, 534
DpnII GATC 3 cut(s) 38, 246, 532
DraI TTTAAA 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 1097
Eam1104I CTCTTC 3 cut(s) 116, 573, 879
EarI CTCTTC 3 cut(s) 116, 573, 879
Ecl136II GAGCTC 1 cut(s) 1310
Eco130I CCWWGG 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 1312
Eco53kI GAGCTC 1 cut(s) 1310
Eco57I CTGAAG 2 cut(s) 462, 903
EcoICRI GAGCTC 1 cut(s) 1310
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 3 cut(s) 346, 727, 754
EcoT14I CCWWGG 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 1096
EcoT38I GRGCYC 1 cut(s) 1312
ErhI CCWWGG 1 cut(s) 479
Esp3I CGTCTC 2 cut(s) 936, 1157
FaeI CATG 5 cut(s) 965, 1098, 1223, 1246, 1255
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FatI CATG 5 cut(s) 961, 1094, 1219, 1242, 1251
FauI CCCGC 1 cut(s) 499
FauNDI CATATG 1 cut(s) 952
FblI GTMKAC 1 cut(s) 701
Fnu4HI GCNGC 5 cut(s) 279, 324, 687, 816, 842
FokI GGATG 1 cut(s) 484
FriOI GRGCYC 1 cut(s) 1312
Fsp4HI GCNGC 5 cut(s) 279, 324, 687, 816, 842
FspBI CTAG 4 cut(s) 111, 159, 210, 713
GlaI GCGC 1 cut(s) 1149
GluI GCNGC 5 cut(s) 279, 324, 687, 816, 842
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 7 cut(s) 80, 129, 171, 652, 855, 864, 1099
HapII CCGG 1 cut(s) 789
HgaI GACGC 2 cut(s) 727, 953
HhaI GCGC 1 cut(s) 1150
Hin1II CATG 5 cut(s) 965, 1098, 1223, 1246, 1255
Hin6I GCGC 1 cut(s) 1148
HinP1I GCGC 1 cut(s) 1148
HincII GTYRAC 4 cut(s) 105, 393, 742, 1075
HindII GTYRAC 4 cut(s) 105, 393, 742, 1075
HpaI GTTAAC 2 cut(s) 105, 393
HpaII CCGG 1 cut(s) 789
HphI GGTGA 4 cut(s) 176, 280, 468, 1022
Hpy166II GTNNAC 7 cut(s) 105, 271, 393, 632, 702, 742, 1075
Hpy188I TCNGA 6 cut(s) 56, 472, 883, 1314, 1323, 1349
Hpy188III TCNNGA 7 cut(s) 250, 565, 826, 941, 1001, 1220, 1277
Hpy8I GTNNAC 7 cut(s) 105, 271, 393, 632, 702, 742, 1075
HpyAV CCTTC 4 cut(s) 663, 803, 1001, 1153
HpyCH4III ACNGT 4 cut(s) 67, 97, 1123, 1334
HpyCH4IV ACGT 1 cut(s) 1166
HpyF10VI GCNNNNNNNGC 9 cut(s) 168, 206, 215, 224, 695, 861, 953, 1062, 1091
HpyF3I CTNAG 4 cut(s) 15, 166, 551, 572
HpySE526I ACGT 1 cut(s) 1166
Hsp92II CATG 5 cut(s) 965, 1098, 1223, 1246, 1255
HspAI GCGC 1 cut(s) 1148
KspAI GTTAAC 2 cut(s) 105, 393
KspI CCGCGG 1 cut(s) 507
Kzo9I GATC 3 cut(s) 38, 246, 532
LmnI GCTCC 2 cut(s) 290, 1090
Lsp1109I GCAGC 5 cut(s) 265, 310, 698, 802, 828
MaeI CTAG 4 cut(s) 111, 159, 210, 713
MaeII ACGT 1 cut(s) 1166
MaeIII GTNAC 2 cut(s) 31, 1177
MalI GATC 3 cut(s) 40, 248, 534
MboI GATC 3 cut(s) 38, 246, 532
MboII GAAGA 6 cut(s) 133, 410, 590, 818, 896, 1016
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 1312
MlsI TGGCCA 1 cut(s) 1099
MluNI TGGCCA 1 cut(s) 1099
MlyI GAGTC 2 cut(s) 1174, 1309
MmeI TCCRAC 1 cut(s) 1149
Mox20I TGGCCA 1 cut(s) 1099
Mph1103I ATGCAT 1 cut(s) 1096
MscI TGGCCA 1 cut(s) 1099
MseI TTAA 8 cut(s) 104, 318, 392, 489, 515, 599, 782, 1032
MslI CAYNNNNRTG 3 cut(s) 98, 266, 1224
Msp20I TGGCCA 1 cut(s) 1099
MspA1I CMGCKG 3 cut(s) 440, 506, 994
MspI CCGG 1 cut(s) 789
MspR9I CCNGG 3 cut(s) 348, 729, 756
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 3 cut(s) 407, 700, 931
MvaI CCWGG 3 cut(s) 348, 729, 756
MvnI CGCG 3 cut(s) 506, 738, 1148
MwoI GCNNNNNNNGC 9 cut(s) 168, 206, 215, 224, 695, 861, 953, 1062, 1091
NdeI CATATG 1 cut(s) 952
NdeII GATC 3 cut(s) 38, 246, 532
NlaIII CATG 5 cut(s) 965, 1098, 1223, 1246, 1255
NlaIV GGNNCC 2 cut(s) 128, 1196
NmuCI GTSAC 2 cut(s) 31, 1177
NsiI ATGCAT 1 cut(s) 1096
NspI RCATGY 1 cut(s) 1246
NspV TTCGAA 1 cut(s) 60
OliI CACNNNNGTG 1 cut(s) 98
PagI TCATGA 1 cut(s) 1219
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 3 cut(s) 407, 700, 931
PfeI GAWTC 8 cut(s) 8, 51, 57, 90, 155, 332, 473, 709
PflMI CCANNNNNTGG 1 cut(s) 1095
PinAI ACCGGT 1 cut(s) 788
PkrI GCNGC 5 cut(s) 280, 325, 688, 817, 843
PleI GAGTC 2 cut(s) 1174, 1309
PpsI GAGTC 2 cut(s) 1174, 1309
Psp124BI GAGCTC 1 cut(s) 1312
Psp6I CCWGG 3 cut(s) 346, 727, 754
PspGI CCWGG 3 cut(s) 346, 727, 754
PspN4I GGNNCC 2 cut(s) 128, 1196
PspPI GGNCC 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 3 cut(s) 345, 556, 725
RsaNI GTAC 3 cut(s) 344, 555, 724
RseI CAYNNNNRTG 3 cut(s) 98, 266, 1224
SacI GAGCTC 1 cut(s) 1312
SacII CCGCGG 1 cut(s) 507
SaqAI TTAA 8 cut(s) 104, 318, 392, 489, 515, 599, 782, 1032
SatI GCNGC 5 cut(s) 279, 324, 687, 816, 842
Sau3AI GATC 3 cut(s) 38, 246, 532
Sau96I GGNCC 1 cut(s) 127
ScaI AGTACT 1 cut(s) 556
SchI GAGTC 2 cut(s) 1174, 1309
ScrFI CCNGG 3 cut(s) 348, 729, 756
SduI GDGCHC 1 cut(s) 1312
SfiI GGCCNNNNNGGCC 1 cut(s) 861
Sfr303I CCGCGG 1 cut(s) 507
SfuI TTCGAA 1 cut(s) 60
SgrBI CCGCGG 1 cut(s) 507
SmiMI CAYNNNNRTG 3 cut(s) 98, 266, 1224
SmlI CTYRAG 2 cut(s) 620, 999
SmoI CTYRAG 2 cut(s) 620, 999
SsiI CCGC 4 cut(s) 504, 506, 992, 1054
SspI AATATT 2 cut(s) 597, 896
SspMI CTAG 4 cut(s) 111, 159, 210, 713
SstI GAGCTC 1 cut(s) 1312
StyD4I CCNGG 3 cut(s) 346, 727, 754
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 4 cut(s) 67, 97, 1123, 1334
TaiI ACGT 1 cut(s) 1169
TaqI TCGA 5 cut(s) 60, 258, 535, 564, 940
TaqII GACCGA 1 cut(s) 867
TatI WGTACW 1 cut(s) 554
TfiI GAWTC 8 cut(s) 8, 51, 57, 90, 155, 332, 473, 709
Tru1I TTAA 8 cut(s) 104, 318, 392, 489, 515, 599, 782, 1032
Tru9I TTAA 8 cut(s) 104, 318, 392, 489, 515, 599, 782, 1032
TscAI CASTG 3 cut(s) 100, 1253, 1339
TseFI GTSAC 2 cut(s) 31, 1177
TseI GCWGC 5 cut(s) 278, 323, 686, 815, 841
Tsp45I GTSAC 2 cut(s) 31, 1177
TspRI CASTG 3 cut(s) 100, 1253, 1339
Van91I CCANNNNNTGG 1 cut(s) 1095
XapI RAATTY 2 cut(s) 829, 1105
XceI RCATGY 1 cut(s) 1246
XmiI GTMKAC 1 cut(s) 701
XspI CTAG 4 cut(s) 111, 159, 210, 713
ZrmI AGTACT 1 cut(s) 556
Zsp2I ATGCAT 1 cut(s) 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.