Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004970

Physical Location & Seq

Genomic Coordinates Forward (+)

3019364 .. 3023090

Gene Structure 3727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41950

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTCATTATCACGGGTTTGTAGAAGAGCCGTTCCCCTGTTCAAGAGCGCACAGCATTTACCTCTTGAGTCCAGATGCATACCCAATTATAATTTAAATGGCGGCAGTACTGTATACCAGAGGCATTTTGGGCATGGTAATAGGTGGCGCCCCAAGTTAGGCTCATTTAACAAATGTGGTCCGCATCAACCCTCTGCTGCTCAATCTCTGTTGAGAATCCAGCGACTCTATTCTACTCAGGCTTCCACACAAGAGAAATCACGCAAGATGCTAGTGTACCTTACGGGTTTGGTTTTTGCAATGGTTGCAGCCAGTTATGCAGCAGTTCCTCTCTACAGAAGATTCTGCCAAGCTACTGGGTATGGTGGCACTATCCAACGCCGTGAGAGTGTTGAACAGAAGATTGCCCGACATGCTAAGGATGGCACGGTCACCACAAGAGAGATTGTGGTGCAATTCAATGCTGATGTGGCCGATGGAATGCAATGGAAGTTCACTCCTACCCAAAGAGAGGTAAGGGTCAAACCTGGTGAAAGTGCACTTGCTTTTTATACCGCTGAAAATCGAAGTTCAACTCCAATAGTTGGTGTCTCTACGTACAATGTTACCCCAATGAAGGCTGCAGTTTACTTCAATAAAATACAGTGCTTTTGCTTTGAGGAGCAGCGCCTTCTTCCTGGGGAGCAGATTGATATGCCTGTGTTCTTTTATATCGACCCTGAGTTTGAAACAGATCCAAGAATGGATGGTATCAATAACATAATTTTGTCCTATACCTTTTTCAAGGTTTCGGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009846 GO:0009856 GO:0009893 GO:0010015 GO:0010101 GO:0010155 GO:0016020 GO:0016021 GO:0019222 GO:0022414 GO:0022622 GO:0022898 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032592 GO:0032879 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043270 GO:0043467 GO:0043621 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051049 GO:0051050 GO:0051341 GO:0051353 GO:0051704 GO:0065007 GO:0065009 GO:0090696 GO:0090697 GO:0090698 GO:0098573 GO:0099402 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

CtaG_Cox11

Protein Analysis

266

Amino Acids

30.22

Weight (kDa)

9.47

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CtaG_Cox11	PF04442	108 - 262	5.1e-61	Cytochrome c oxidase assembly protein CtaG/Cox11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02410 AT1G02410 AT1G02410
malus_domestica	MD02G1272100.v1.1 MD07G1041100.v1.1
prunus_persica	Prupe.3G281100_v2.0.a1 Prupe.3G281100_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1
pyrus_communis	pycom02g23270 pycom07g02850
rosa_chinensis	RchiOBHm_Chr1g0359421 RchiOBHm_Chr3g0452351
rosa_laevigata	RLG00000025608 RLG00000027871
rosa_multiflora	Rmu_sc0010928.1_g000013 Rmu_ssc0000358.1_g000007
rosa_roxburghii	Rroxscaffold_4G00297020
rosa_rugosa	Rorug01G0271100 Rorug02G0640300
rosa_samantha	Rh1AG284500 Rh1BG250400 Rh1CG268500 Rh1DG279500 Rh3AG042000 Rh3CG042200
rosa_wichuraiana	Rw1G025270 Rw3G003210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	147
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	3 cut(s)	102, 182, 555
AclWI	GGATC	1 cut(s)	728
AcoI	YGGCCR	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	3 cut(s)	109, 278, 599
AfiI	CCNNNNNNNGG	4 cut(s)	158, 511, 584, 616
AgsI	TTSAA	7 cut(s)	43, 395, 460, 573, 634, 728, 784
AjnI	CCWGG	2 cut(s)	526, 676
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	1 cut(s)	595
Alw44I	GTGCAC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	728
AoxI	GGCC	1 cut(s)	471
ApaLI	GTGCAC	1 cut(s)	537
ApeKI	GCWGC	5 cut(s)	197, 308, 320, 620, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AspLEI	GCGC	3 cut(s)	50, 150, 669
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	424, 542
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	5 cut(s)	184, 320, 332, 607, 676
BccI	CCATC	3 cut(s)	416, 470, 740
BceAI	ACGGC	2 cut(s)	14, 366
BciT130I	CCWGG	2 cut(s)	528, 678
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	2 cut(s)	334, 621
BfoI	RGCGCY	2 cut(s)	151, 670
BisI	GCNGC	6 cut(s)	103, 198, 309, 321, 621, 665
BlsI	GCNGC	6 cut(s)	104, 199, 310, 322, 622, 666
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	528, 678
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	2 cut(s)	528, 678
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	3 cut(s)	65, 193, 258
BmuI	ACTGGG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 511, 584, 616
Bse1I	ACTGG	2 cut(s)	312, 361
Bse3DI	GCAATG	2 cut(s)	306, 491
BseBI	CCWGG	2 cut(s)	528, 678
BseDI	CCNNGG	1 cut(s)	677
BseGI	GGATG	2 cut(s)	427, 751
BseLI	CCNNNNNNNGG	4 cut(s)	158, 511, 584, 616
BseMI	GCAATG	2 cut(s)	306, 491
BseMII	CTCAG	2 cut(s)	251, 711
BseNI	ACTGG	2 cut(s)	312, 361
BseRI	GAGGAG	1 cut(s)	674
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	5 cut(s)	184, 320, 332, 607, 676
BshFI	GGCC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	541
BslI	CCNNNNNNNGG	4 cut(s)	158, 511, 584, 616
BsmAI	GTCTC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	1 cut(s)	733
BspACI	CCGC	3 cut(s)	102, 182, 555
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	2 cut(s)	250, 712
BspLI	GGNNCC	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	1 cut(s)	728
BspQI	GCTCTTC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	147
BsrDI	GCAATG	2 cut(s)	306, 491
BsrI	ACTGG	2 cut(s)	312, 361
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	1 cut(s)	733
BssNAI	GTATAC	1 cut(s)	115
BssNI	GRCGYC	1 cut(s)	148
Bst1107I	GTATAC	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	528, 678
Bst4CI	ACNGT	3 cut(s)	112, 430, 645
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	597
BstDEI	CTNAG	3 cut(s)	237, 417, 720
BstEII	GGTNACC	1 cut(s)	430
BstF5I	GGATG	2 cut(s)	427, 751
BstH2I	RGCGCY	2 cut(s)	151, 670
BstHHI	GCGC	3 cut(s)	50, 150, 669
BstKTI	GATC	1 cut(s)	736
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	1 cut(s)	733
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 305, 317, 413, 470
BstNI	CCWGG	2 cut(s)	528, 678
BstNSI	RCATGY	1 cut(s)	416
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	526, 676
BstSFI	CTRYAG	2 cut(s)	334, 621
BstSLI	GKGCMC	1 cut(s)	541
BstSNI	TACGTA	1 cut(s)	597
BstV1I	GCAGC	5 cut(s)	184, 320, 332, 607, 676
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	733
BstZ17I	GTATAC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	473
BtsCI	GGATG	2 cut(s)	427, 751
BtsIMutI	CAGTG	1 cut(s)	650
CfoI	GCGC	3 cut(s)	50, 150, 669
Cfr13I	GGNCC	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	108, 277, 598
CviAII	CATG	2 cut(s)	134, 413
CviJI	RGCY	7 cut(s)	29, 162, 242, 311, 353, 473, 620
CviKI_1	RGCY	7 cut(s)	29, 162, 242, 311, 353, 473, 620
CviQI	GTAC	3 cut(s)	108, 277, 598
DdeI	CTNAG	3 cut(s)	237, 417, 720
DinI	GGCGCC	1 cut(s)	149
DpnI	GATC	1 cut(s)	735
DpnII	GATC	1 cut(s)	733
DraI	TTTAAA	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco105I	TACGTA	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	526, 676
EcoT22I	ATGCAT	1 cut(s)	80
EgeI	GGCGCC	1 cut(s)	149
EheI	GGCGCC	1 cut(s)	149
FaeI	CATG	2 cut(s)	137, 416
FatI	CATG	2 cut(s)	133, 412
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	6 cut(s)	103, 198, 309, 321, 621, 665
FokI	GGATG	2 cut(s)	434, 758
Fsp4HI	GCNGC	6 cut(s)	103, 198, 309, 321, 621, 665
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	3 cut(s)	49, 149, 668
GluI	GCNGC	6 cut(s)	103, 198, 309, 321, 621, 665
HaeII	RGCGCY	2 cut(s)	151, 670
HaeIII	GGCC	1 cut(s)	473
HhaI	GCGC	3 cut(s)	50, 150, 669
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	137, 416
Hin6I	GCGC	3 cut(s)	48, 148, 667
HinP1I	GCGC	3 cut(s)	48, 148, 667
HinfI	GANTC	4 cut(s)	68, 216, 225, 342
HphI	GGTGA	2 cut(s)	424, 542
Hpy166II	GTNNAC	5 cut(s)	115, 277, 495, 539, 628
Hpy188I	TCNGA	1 cut(s)	793
Hpy188III	TCNNGA	3 cut(s)	43, 65, 72
Hpy8I	GTNNAC	5 cut(s)	115, 277, 495, 539, 628
HpyAV	CCTTC	2 cut(s)	610, 680
HpyCH4III	ACNGT	3 cut(s)	112, 430, 645
HpyCH4IV	ACGT	1 cut(s)	596
HpyCH4V	TGCA	8 cut(s)	78, 299, 308, 320, 454, 484, 539, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 305, 317, 413, 470
HpyF3I	CTNAG	3 cut(s)	237, 417, 720
HpySE526I	ACGT	1 cut(s)	596
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	137, 416
HspAI	GCGC	3 cut(s)	48, 148, 667
KasI	GGCGCC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	733
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	661, 682
Lsp1109I	GCAGC	5 cut(s)	184, 320, 332, 607, 676
LweI	GCATC	3 cut(s)	65, 193, 258
MabI	ACCWGGT	1 cut(s)	526
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	596
MaeIII	GTNAC	2 cut(s)	430, 604
MalI	GATC	1 cut(s)	735
MboI	GATC	1 cut(s)	733
MboII	GAAGA	4 cut(s)	36, 351, 412, 665
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	4 cut(s)	85, 91, 455, 762
Mly113I	GGCGCC	1 cut(s)	148
MlyI	GAGTC	2 cut(s)	77, 219
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	7 cut(s)	72, 114, 202, 339, 505, 652, 787
Mph1103I	ATGCAT	1 cut(s)	80
MseI	TTAA	2 cut(s)	95, 168
MspA1I	CMGCKG	1 cut(s)	557
MspR9I	CCNGG	2 cut(s)	528, 678
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	2 cut(s)	528, 678
MwoI	GCNNNNNNNGC	5 cut(s)	130, 305, 317, 413, 470
NarI	GGCGCC	1 cut(s)	148
NdeII	GATC	1 cut(s)	733
NlaIII	CATG	2 cut(s)	137, 416
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	80
NspI	RCATGY	1 cut(s)	416
PciSI	GCTCTTC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	216, 342
PflMI	CCANNNNNTGG	1 cut(s)	584
PkrI	GCNGC	6 cut(s)	104, 199, 310, 322, 622, 666
PleI	GAGTC	2 cut(s)	76, 219
PluTI	GGCGCC	1 cut(s)	151
PpsI	GAGTC	2 cut(s)	76, 219
Ppu21I	YACGTR	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	526, 676
PspEI	GGTNACC	1 cut(s)	430
PspGI	CCWGG	2 cut(s)	526, 676
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	3 cut(s)	109, 278, 599
RsaNI	GTAC	3 cut(s)	108, 277, 598
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	95, 168
SatI	GCNGC	6 cut(s)	103, 198, 309, 321, 621, 665
Sau3AI	GATC	1 cut(s)	733
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	2 cut(s)	77, 219
ScrFI	CCNGG	2 cut(s)	528, 678
SduI	GDGCHC	1 cut(s)	541
SetI	ASST	9 cut(s)	64, 146, 282, 355, 516, 529, 599, 779, 789
SexAI	ACCWGGT	1 cut(s)	526
SfaNI	GCATC	3 cut(s)	65, 193, 258
SfcI	CTRYAG	2 cut(s)	334, 621
SfoI	GGCGCC	1 cut(s)	149
SinI	GGWCC	1 cut(s)	179
SmiI	ATTTAAAT	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SnaBI	TACGTA	1 cut(s)	597
Sse9I	AATT	4 cut(s)	85, 91, 455, 762
SsiI	CCGC	3 cut(s)	102, 182, 555
SspDI	GGCGCC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	526, 676
SwaI	ATTTAAAT	1 cut(s)	96
TaaI	ACNGT	3 cut(s)	112, 430, 645
TaiI	ACGT	1 cut(s)	599
TaqI	TCGA	2 cut(s)	565, 714
TasI	AATT	4 cut(s)	85, 91, 455, 762
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	216, 342
Tru1I	TTAA	2 cut(s)	95, 168
Tru9I	TTAA	2 cut(s)	95, 168
TscAI	CASTG	1 cut(s)	650
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	5 cut(s)	197, 308, 320, 620, 664
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	629
TspRI	CASTG	1 cut(s)	650
Van91I	CCANNNNNTGG	1 cut(s)	584
VneI	GTGCAC	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	179
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	272
ZrmI	AGTACT	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.