Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004970

Physical Location & Seq

Genomic Coordinates Forward (+)

2384251 .. 2387026

Gene Structure 2776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02850.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCATGGTCTGGGGTTTGTAAGAGAGCTCTTCCCCTCTCAACTTACCTCAAAAGCTCACACCTTTTCACTCTCCAGTCCAGATGCATACCCAATTGTAATTTCAATGGAGGTGGTAGTAGTATTATTGCATATCAGAGGCATTTCAGCCATGATAGTAAGAATATGTGGCGGCGATTTGAGTTAAGCTCGTTCAACAAGCGTGGTAGTCAGCTCTCACCATTTGCTTCTCAATCTCTGTTGAGAAGAATCCAGAGACCCTATTCTTCTCTGGCTGCCACGCAACGAAAATCACGCAAGATGCTTTACTACTTGACGGGTTTGGTTTTTGCAATGGTGGCAGCCAGTTATGCAGCTGTTCCTCTTTATAGAAGATTCTGCCAAGCTACAGGGTATGGAGGCACTATCCAACGCCGTGAGAGTGTTGAACAGAAGATTGCTCGGCATGCTAAGGATGGCACAGTCACAAATAGGGAGATAGTGGTGCAGTTCAATGCTGATGTGGCTGATGGAATGCAATGGAAGTTTATTCCTACACAAAGAGAGGTAAGGGTAAAGCCTGGAGAAAGTGCACTTGCTTTCTATACCGCTGAAAACCGAAGTTCAACTCCAATAGTTGGTGTCTCAACATATAATGTTACCCCTATGAAGGCTGCAGTTTACTTCAATAAAATACAGTGCTTTTGCTTCGAGGAGCAGCGGCTTCTTCCAGGGGAGCAGATTGACATGCCTGTGTTCTTTTATATCGACCCCGAGTTTGAAACAGATCCAAGAATGGACGGTATCAATAACATAATTTTGTCCTATACATTTTTCAAGGTCTCAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009846 GO:0009856 GO:0009893 GO:0010015 GO:0010101 GO:0010155 GO:0016020 GO:0016021 GO:0019222 GO:0022414 GO:0022622 GO:0022898 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032592 GO:0032879 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043270 GO:0043467 GO:0043621 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051049 GO:0051050 GO:0051341 GO:0051353 GO:0051704 GO:0065007 GO:0065009 GO:0090696 GO:0090697 GO:0090698 GO:0098573 GO:0099402 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

CtaG_Cox11

Protein Analysis

278

Amino Acids

31.66

Weight (kDa)

9.58

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02410 AT1G02410 AT1G02410
malus_domestica	MD02G1272100.v1.1 MD07G1041100.v1.1
prunus_persica	Prupe.3G281100_v2.0.a1 Prupe.3G281100_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1 Prupe.7G012700_v2.0.a1
pyrus_communis	pycom02g23270 pycom07g02850
rosa_chinensis	RchiOBHm_Chr1g0359421 RchiOBHm_Chr3g0452351
rosa_laevigata	RLG00000025608 RLG00000027871
rosa_multiflora	Rmu_sc0010928.1_g000013 Rmu_ssc0000358.1_g000007
rosa_roxburghii	Rroxscaffold_4G00297020
rosa_rugosa	Rorug01G0271100 Rorug02G0640300
rosa_samantha	Rh1AG284500 Rh1BG250400 Rh1CG268500 Rh1DG279500 Rh3AG042000 Rh3CG042200
rosa_wichuraiana	Rw1G025270 Rw3G003210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	617
AciI	CCGC	3 cut(s)	172, 588, 700
AclWI	GGATC	1 cut(s)	761
AfiI	CCNNNNNNNGG	2 cut(s)	617, 649
AgsI	TTSAA	8 cut(s)	106, 196, 428, 493, 606, 667, 761, 817
AjnI	CCWGG	2 cut(s)	559, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	6 cut(s)	29, 57, 189, 214, 356, 386
AluI	AGCT	6 cut(s)	29, 57, 189, 214, 356, 386
Alw21I	GWGCWC	2 cut(s)	31, 574
Alw26I	GTCTC	3 cut(s)	250, 628, 826
Alw44I	GTGCAC	1 cut(s)	570
AlwI	GGATC	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	752
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	5 cut(s)	275, 341, 353, 653, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
AsuHPI	GGTGA	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	2 cut(s)	31, 574
BbvI	GCAGC	5 cut(s)	262, 353, 365, 640, 709
BccI	CCATC	2 cut(s)	449, 503
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	2 cut(s)	561, 711
BcoDI	GTCTC	3 cut(s)	250, 628, 826
BfmI	CTRYAG	2 cut(s)	387, 654
BisI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
BlsI	GCNGC	7 cut(s)	174, 277, 343, 355, 655, 699, 702
Bme1390I	CCNGG	2 cut(s)	561, 711
BmeT110I	CYCGRG	1 cut(s)	752
BmrFI	CCNGG	2 cut(s)	561, 711
BmsI	GCATC	2 cut(s)	74, 291
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	2 cut(s)	59, 582
Bpu10I	CCTNAGC	1 cut(s)	450
BsaI	GGTCTC	2 cut(s)	250, 826
BsaJI	CCNNGG	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 649
Bse1I	ACTGG	2 cut(s)	76, 345
Bse3DI	GCAATG	2 cut(s)	339, 524
BseBI	CCWGG	2 cut(s)	561, 711
BseDI	CCNNGG	1 cut(s)	710
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	617, 649
BseMI	GCAATG	2 cut(s)	339, 524
BseNI	ACTGG	2 cut(s)	76, 345
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	5 cut(s)	262, 353, 365, 640, 709
BsgI	GTGCAG	1 cut(s)	506
BsiHKAI	GWGCWC	2 cut(s)	31, 574
BsiHKCI	CYCGRG	1 cut(s)	752
BslI	CCNNNNNNNGG	2 cut(s)	617, 649
BsmAI	GTCTC	3 cut(s)	250, 628, 826
BsmI	GAATGC	1 cut(s)	519
Bso31I	GGTCTC	2 cut(s)	250, 826
BsoBI	CYCGRG	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	31, 574
Bsp143I	GATC	1 cut(s)	766
BspACI	CCGC	3 cut(s)	172, 588, 700
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	1 cut(s)	761
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	2 cut(s)	250, 826
BsrDI	GCAATG	2 cut(s)	339, 524
BsrI	ACTGG	2 cut(s)	76, 345
BssECI	CCNNGG	1 cut(s)	710
BssMI	GATC	1 cut(s)	766
Bst2UI	CCWGG	2 cut(s)	561, 711
Bst4CI	ACNGT	3 cut(s)	463, 678, 782
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	450, 823
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	1 cut(s)	769
BstMAI	GTCTC	3 cut(s)	250, 628, 826
BstMBI	GATC	1 cut(s)	766
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 350, 446, 503
BstNI	CCWGG	2 cut(s)	561, 711
BstNSI	RCATGY	2 cut(s)	449, 730
BstSCI	CCNGG	2 cut(s)	559, 709
BstSFI	CTRYAG	2 cut(s)	387, 654
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	5 cut(s)	262, 353, 365, 640, 709
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	683
Cac8I	GCNNGC	1 cut(s)	447
CspCI	CAANNNNNGTGG	4 cut(s)	94, 129, 184, 219
CviAII	CATG	4 cut(s)	6, 152, 446, 727
DdeI	CTNAG	2 cut(s)	450, 823
DpnI	GATC	1 cut(s)	768
DpnII	GATC	1 cut(s)	766
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	2 cut(s)	250, 826
Eco53kI	GAGCTC	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	752
EcoICRI	GAGCTC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	559, 709
EcoT22I	ATGCAT	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	4 cut(s)	9, 155, 449, 730
FatI	CATG	4 cut(s)	5, 151, 445, 726
Fnu4HI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
GluI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
GsuI	CTGGAG	2 cut(s)	59, 582
Hin1II	CATG	4 cut(s)	9, 155, 449, 730
HinfI	GANTC	2 cut(s)	249, 375
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	2 cut(s)	572, 661
Hpy188I	TCNGA	2 cut(s)	138, 826
Hpy188III	TCNNGA	2 cut(s)	81, 253
Hpy8I	GTNNAC	2 cut(s)	572, 661
HpyAV	CCTTC	1 cut(s)	643
HpyCH4III	ACNGT	3 cut(s)	463, 678, 782
HpyCH4V	TGCA	8 cut(s)	87, 131, 332, 353, 487, 517, 572, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 350, 446, 503
HpyF3I	CTNAG	2 cut(s)	450, 823
Hsp92II	CATG	4 cut(s)	9, 155, 449, 730
Kzo9I	GATC	1 cut(s)	766
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	694, 715
Lsp1109I	GCAGC	5 cut(s)	262, 353, 365, 640, 709
LweI	GCATC	2 cut(s)	74, 291
MaeIII	GTNAC	2 cut(s)	463, 637
MalI	GATC	1 cut(s)	768
MboI	GATC	1 cut(s)	766
MboII	GAAGA	6 cut(s)	23, 258, 258, 384, 445, 698
MfeI	CAATTG	1 cut(s)	94
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	2 cut(s)	31, 574
MluCI	AATT	3 cut(s)	94, 100, 795
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	9 cut(s)	47, 59, 104, 132, 372, 392, 538, 685, 820
Mph1103I	ATGCAT	1 cut(s)	89
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	731
MspA1I	CMGCKG	3 cut(s)	356, 590, 700
MspR9I	CCNGG	2 cut(s)	561, 711
MunI	CAATTG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	2 cut(s)	561, 711
MwoI	GCNNNNNNNGC	4 cut(s)	338, 350, 446, 503
NdeII	GATC	1 cut(s)	766
NlaIII	CATG	4 cut(s)	9, 155, 449, 730
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	2 cut(s)	449, 730
PaeI	GCATGC	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	249, 375
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	7 cut(s)	174, 277, 343, 355, 655, 699, 702
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	559, 709
PspGI	CCWGG	2 cut(s)	559, 709
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	731
SacI	GAGCTC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	7 cut(s)	173, 276, 342, 354, 654, 698, 701
Sau3AI	GATC	1 cut(s)	766
ScrFI	CCNGG	2 cut(s)	561, 711
SduI	GDGCHC	2 cut(s)	31, 574
SfaNI	GCATC	2 cut(s)	74, 291
SfcI	CTRYAG	2 cut(s)	387, 654
SmiMI	CAYNNNNRTG	1 cut(s)	731
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	3 cut(s)	94, 100, 795
SsiI	CCGC	3 cut(s)	172, 588, 700
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	559, 709
TaaI	ACNGT	3 cut(s)	463, 678, 782
TaqI	TCGA	2 cut(s)	690, 747
TasI	AATT	3 cut(s)	94, 100, 795
TauI	GCSGC	2 cut(s)	175, 703
TfiI	GAWTC	2 cut(s)	249, 375
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	683
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	5 cut(s)	275, 341, 353, 653, 697
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	683
Van91I	CCANNNNNTGG	1 cut(s)	617
VneI	GTGCAC	1 cut(s)	570
XceI	RCATGY	2 cut(s)	449, 730
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.