Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000373

Physical Location & Seq

Genomic Coordinates Forward (+)

75262766 .. 75267473

Gene Structure 4708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0640300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGGGCGTTTTTACTTGTTTTTTTCAGTGATTGTGTCATGGGTTTTGTTCCTCCCCAGTACCCATGAGTTGCAAACCTCTCAGAGCCAAGTGTTAATGCAGCTGAGGAAACATTTAGAGTTCCCTTCCCCATTAGGAGTTTTGGAGAATTACACTGGAGACCTCTGTAACCTATCTTCCTCTGCACAGATGAGCATTTCATGCCAGGAAAATTCTATTACTGAGCTCAAAGTCATGGGAGATAAGCTTTTTAATGTCACCGAGTTCAATGGATTTGCAATTCCCAATAAAACTCTTTCTGAGAAGTTCTCCATTGATTCTTTTGTGACCACATTGTCAAGGTTGCCTAGCTTGAGGGTTCTTAGCTTAGTGTCTTTGGGGATTTGGGGACCACTTCCTGATAAGATTCATAGGTTATCTTCGCTTGAAGTCTTAGACCTGAGCTCAAATTTCATATTTGGTTCAATTCCCCCTAAGATATCCACAATGGTCAAGCTTCACACTCTAAGCCTGGAGGCCAATTATTTCAATGAGACTGTTCCTGATTGGTTGGACTCGTTATCAAACCTCGCCATTTTGTGCTTGAAGAACAATCAGCTCAAGGGTCAGTTTCCTTCTTCAATATGCAGAATTAAGACACTCACTGACCTTGCTCTGTCTCACAATGAGCTTTCTGGAAAATTACCTGACATGAGTACTTTAACCAGCCTGCATGTATTGGATTTGAGAGAAAATGATTTAGATTCTGAACTACCAGTAATGCCGAAAGGATTGGTTACAGTACTTCTTAGCAAGAACTCGTTCTCAGGAAAGATTCCGGTGCAATTTGGTGATTTGAGTCAGCTTCAGCACCTTGATCTATCATTCAATTATCTCAGTGGAGCACCACCCTCTAACTTGTTCTCTTTGCCAAAAATCAGTTATCTGAATTTAGCATCCAATATGCTGAGTGGACCATTTCCAAACGGTCTAAATTGTGGTGGCAAACTTGGTTTTGTTGATATTTCTAATAACAAGTTAGCAGGGGATCTTCCTTCTTGCCTGGGTAGTACCTCAGATGAGAGAGTTGTTGAACTCAGTGGTAACTGTTTGGCGAATGCTTCCCAACACCAGCATGACCATTCATATTGTACAAAGGCTCTTGCAAGGAGAAAACAATCTAGTGTGAGAGAGATTGTGGTGCTAGTTGCTGTTGCCATCGGAGCTCTTCTTGTTTTAGTACTTTCTGTACTTGCGGTTATTTGCTTGTGTAGAAGATACCGTTCAAGGAAGTCTGAGCATAACATATTTGCAAAAGCTGTGCCAGATAATTCACCAAATGATCTTTGCTCGGACATCGTTACAAATGCTAGATATATATCTCAAGCAGCGAAATTAGAGACACATGGTGCCCCAGTATGTCGATTGTTTTCACTTGAAGAGTTGAAGGAAGCAACAAACGACTTTGATTTCTCAATGTTTTTGGGTGAAGGCTCTATGGGAAAGCTTTACAAAGGCAAGTTGGAAAATGGGACCTCAGTTGCAATCAGATCTCTGGCTATATCAAAAAAATGTTCAACTAATAACCTTAAAGTTCAGCTGGATTCACTCTCAAAGCTTCACCATCCTCACTTGGTTGGCCTGTTGGGTCATTGCATTGACAGTAGTGGACAAGATGATTCTGGTGGCAAAAGACTTTTCCTTGTATATGAATACATCTCTAGTGGGAATTACCGTACCTATCTTTCAGAAAACTATCCAGAGAAGGTTCTCAAGTGGTCTGATAGATTGGCAATTCTAATAGGAGTTGCAAAAGCAGTCCATTTTCTACACACTGGGGTTATTCCAGGTTCTTTCAACAATCGATTGAAAACAAACAACATATTGCTAGATGAGCATCGGATTCCAAAGCTGAGTGACTATGGGATGTGCCTCATCACAGAAGAAATTGAAAAACCTGAGGCAAAGGGAGAAGGCCCAAAATCAAGGCGTAAAAAGGATCTGGAGGGTGATGTTTACAACTTTGGATTTGTACTACTTGAATCACTCGTCGGACCTATAGTAAGTGGAAAAGGGGAAACCTTTCTGCTGAATGAAATGGCATCATTTGGGAGCCAAGATGGTCGAAGAAGAATTGTGGATCCAATTGTGTTGACAACTTGCTCACAGGAGTCGTTATCCATTGTGGTATCGATCACAAAGAAATGCATATCTCCAGAAGTATCATCACGTCCCTCTTTCGAAGACGTGCTTTGGAACTTGCAGTATGCAGCTCAAGTCCAGGCCACTGCTGATGCTGATCAAAAATCCGATGCTACATCCGTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009846 GO:0009856 GO:0009893 GO:0010015 GO:0010101 GO:0010155 GO:0016020 GO:0016021 GO:0019222 GO:0022414 GO:0022622 GO:0022898 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032592 GO:0032879 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043270 GO:0043467 GO:0043621 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0048364 GO:0048518 GO:0048522 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051049 GO:0051050 GO:0051341 GO:0051353 GO:0051704 GO:0065007 GO:0065009 GO:0090696 GO:0090697 GO:0090698 GO:0098573 GO:0099402 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

CtaG_Cox11

Protein Analysis

769

Amino Acids

84.52

Weight (kDa)

6.83

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	110 - 316	1.2e-12	Leucine-rich repeat region
LRR_8	PF13855	165 - 224	6.6e-07	Leucine rich repeat
LRR_8	PF13855	257 - 316	2.8e-08	Leucine rich repeat
Pkinase	PF00069	485 - 744	3.3e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	486 - 745	1.2e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04940 AT3G04940 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28020 AT5G28030 AT5G28030 AT5G28030 AT5G28030 AT5G28030
fragaria_vesca	FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03790 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830 FvH4_6g03830
malus_domestica	MD04G1218200.v1.1 MD04G1218300.v1.1 MD04G1218500.v1.1 MD12G1235500.v1.1
prunus_persica	Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1 Prupe.6G338100_v2.0.a1
pyrus_communis	pycom04g19410 pycom04g19420
rosa_chinensis	RchiOBHm_Chr3g0452261 RchiOBHm_Chr3g0452281 RchiOBHm_Chr3g0452291 RchiOBHm_Chr3g0452301 RchiOBHm_Chr3g0452341 RchiOBHm_Chr3g0452361 RchiOBHm_Chr3g0452371 RchiOBHm_Chr3g0452381 RchiOBHm_Chr3g0452931
rosa_laevigata	RLG00000025606 RLG00000025607 RLG00000025609 RLG00000025610 RLG00000025612 RLG00000025613
rosa_multiflora	Rmu_sc0002823.1_g000002 Rmu_sc0010928.1_g000005 Rmu_sc0010928.1_g000006 Rmu_sc0010928.1_g000011 Rmu_sc0010928.1_g000012 Rmu_sc0010928.1_g000015 Rmu_sc0011680.1_g000012 Rmu_sc0011680.1_g000014 Rmu_sc0011680.1_g000015
rosa_roxburghii	Rroxscaffold_6G00429380 Rroxscaffold_6G00429390 Rroxscaffold_6G00429400 Rroxscaffold_6G00429410 Rroxscaffold_6G00429420
rosa_rugosa	Rorug02G0639700 Rorug02G0639800 Rorug02G0639900 Rorug02G0639900 Rorug02G0639900 Rorug02G0640000 Rorug02G0640000 Rorug02G0640100 Rorug02G0640200 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640300 Rorug02G0640400 Rorug02G0643700
rosa_samantha	Rh3AG041800 Rh3AG042100 Rh3AG042200 Rh3AG046700 Rh3BG043400 Rh3CG041800 Rh3DG042700 Rh3DG042800 Rh3DG043100 Rh3DG043200 Rh3DG048700
rosa_wichuraiana	Rw3G003180 Rw3G003190 Rw3G003200 Rw3G003220 Rw3G003230 Rw3G003240 Rw3G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	1388
AciI	CCGC	1 cut(s)	1235
AclWI	GGATC	4 cut(s)	1035, 1986, 2114, 2127
AcsI	RAATTY	3 cut(s)	211, 448, 928
AcuI	CTGAAG	1 cut(s)	830
AdeI	CACNNNGTG	1 cut(s)	1388
AfaI	GTAC	9 cut(s)	61, 697, 783, 1051, 1132, 1221, 1230, 1717, 2013
AjiI	CACGTC	2 cut(s)	2210, 2227
AjnI	CCWGG	5 cut(s)	204, 510, 1041, 1825, 2259
Alw21I	GWGCWC	4 cut(s)	228, 446, 886, 1207
Alw26I	GTCTC	4 cut(s)	153, 527, 663, 1373
AlwI	GGATC	4 cut(s)	1035, 1986, 2114, 2127
AoxI	GGCC	4 cut(s)	516, 1618, 1954, 2262
ApeKI	GCWGC	3 cut(s)	100, 1367, 2249
ApoI	RAATTY	3 cut(s)	211, 448, 928
Asp700I	GAANNNNTTC	2 cut(s)	800, 2061
AspS9I	GGNCC	5 cut(s)	389, 953, 1512, 1955, 2033
AsuHPI	GGTGA	6 cut(s)	250, 842, 1305, 1478, 1592, 2000
AsuII	TTCGAA	1 cut(s)	2220
AvaII	GGWCC	4 cut(s)	389, 953, 1512, 2033
AxyI	CCTNAGG	1 cut(s)	1938
BaeGI	GKGCMC	1 cut(s)	1393
BamHI	GGATCC	1 cut(s)	2119
BanI	GGYRCC	1 cut(s)	1388
BanII	GRGCYC	3 cut(s)	228, 446, 1207
BarI	GAAGNNNNNNTAC	2 cut(s)	160, 192
BbsI	GAAGAC	1 cut(s)	2229
Bbv12I	GWGCWC	4 cut(s)	228, 446, 886, 1207
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	112, 1379, 2261
BccI	CCATC	3 cut(s)	1205, 1611, 2093
BciT130I	CCWGG	5 cut(s)	206, 512, 1043, 1827, 2261
BclI	TGATCA	1 cut(s)	2278
BcoDI	GTCTC	4 cut(s)	153, 527, 663, 1373
BfaI	CTAG	6 cut(s)	348, 1161, 1184, 1350, 1701, 1868
BfmI	CTRYAG	1 cut(s)	2037
BglII	AGATCT	1 cut(s)	1529
BisI	GCNGC	3 cut(s)	101, 1368, 2250
BlsI	GCNGC	3 cut(s)	102, 1369, 2251
BmcAI	AGTACT	3 cut(s)	697, 783, 1221
Bme1390I	CCNGG	5 cut(s)	206, 512, 1043, 1827, 2261
Bme18I	GGWCC	4 cut(s)	389, 953, 1512, 2033
BmgBI	CACGTC	2 cut(s)	2210, 2227
BmgT120I	GGNCC	5 cut(s)	389, 953, 1512, 1955, 2033
BmiI	GGNNCC	5 cut(s)	390, 1390, 1513, 2093, 2121
BmrFI	CCNGG	5 cut(s)	206, 512, 1043, 1827, 2261
BmrI	ACTGGG	3 cut(s)	51, 1388, 1824
BmsI	GCATC	5 cut(s)	944, 1885, 2090, 2263, 2281
BmuI	ACTGGG	3 cut(s)	51, 1388, 1824
BpiI	GAAGAC	1 cut(s)	2229
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	4 cut(s)	177, 533, 2003, 2178
Bpu10I	CCTNAGC	2 cut(s)	104, 440
Bpu14I	TTCGAA	1 cut(s)	2220
BpuEI	CTTGAG	5 cut(s)	373, 584, 1347, 1736, 2238
Bsa29I	ATCGAT	2 cut(s)	1843, 2171
BsaBI	GATNNNNATC	3 cut(s)	1357, 1875, 2277
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	1042
BsaWI	WCCGGW	1 cut(s)	817
Bse1I	ACTGG	5 cut(s)	57, 160, 755, 1394, 1819
Bse21I	CCTNAGG	1 cut(s)	1938
Bse3DI	GCAATG	1 cut(s)	1630
Bse8I	GATNNNNATC	3 cut(s)	1357, 1875, 2277
BseBI	CCWGG	5 cut(s)	206, 512, 1043, 1827, 2261
BseCI	ATCGAT	2 cut(s)	1843, 2171
BseDI	CCNNGG	1 cut(s)	1042
BseGI	GGATG	4 cut(s)	935, 1603, 1911, 2297
BseJI	GATNNNNATC	3 cut(s)	1357, 1875, 2277
BseMI	GCAATG	1 cut(s)	1630
BseNI	ACTGG	5 cut(s)	57, 160, 755, 1394, 1819
BseSI	GKGCMC	1 cut(s)	1393
BseXI	GCAGC	3 cut(s)	112, 1379, 2261
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	4 cut(s)	518, 1620, 1956, 2264
BshNI	GGYRCC	1 cut(s)	1388
BshVI	ATCGAT	2 cut(s)	1843, 2171
BsiHKAI	GWGCWC	4 cut(s)	228, 446, 886, 1207
BsiSI	CCGG	1 cut(s)	818
BslFI	GGGAC	3 cut(s)	402, 1525, 2196
BsmAI	GTCTC	4 cut(s)	153, 527, 663, 1373
BsmFI	GGGAC	3 cut(s)	402, 1525, 2196
BsmI	GAATGC	1 cut(s)	1102
BsnI	GGCC	4 cut(s)	518, 1620, 1956, 2264
Bso31I	GGTCTC	1 cut(s)	153
Bsp119I	TTCGAA	1 cut(s)	2220
Bsp1286I	GDGCHC	5 cut(s)	228, 446, 886, 1207, 1393
Bsp1407I	TGTACA	1 cut(s)	1130
Bsp143I	GATC	8 cut(s)	856, 1027, 1321, 1529, 1978, 2119, 2172, 2278
BspACI	CCGC	1 cut(s)	1235
BspANI	GGCC	4 cut(s)	518, 1620, 1956, 2264
BspDI	ATCGAT	2 cut(s)	1843, 2171
BspLI	GGNNCC	5 cut(s)	390, 1390, 1513, 2093, 2121
BspPI	GGATC	4 cut(s)	1035, 1986, 2114, 2127
BspQI	GCTCTTC	1 cut(s)	1212
BspT104I	TTCGAA	1 cut(s)	2220
BspT107I	GGYRCC	1 cut(s)	1388
BspTNI	GGTCTC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	1630
BsrGI	TGTACA	1 cut(s)	1130
BsrI	ACTGG	5 cut(s)	57, 160, 755, 1394, 1819
BssECI	CCNNGG	1 cut(s)	1042
BssMI	GATC	8 cut(s)	856, 1027, 1321, 1529, 1978, 2119, 2172, 2278
Bst2UI	CCWGG	5 cut(s)	206, 512, 1043, 1827, 2261
Bst4CI	ACNGT	7 cut(s)	538, 781, 968, 1088, 1262, 1643, 1715
Bst6I	CTCTTC	2 cut(s)	1212, 1413
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	1130
BstBI	TTCGAA	1 cut(s)	2220
BstC8I	GCNNGC	1 cut(s)	710
BstF5I	GGATG	4 cut(s)	935, 1603, 1911, 2297
BstKTI	GATC	8 cut(s)	859, 1030, 1324, 1532, 1981, 2122, 2175, 2281
BstMAI	GTCTC	4 cut(s)	153, 527, 663, 1373
BstMBI	GATC	8 cut(s)	856, 1027, 1321, 1529, 1978, 2119, 2172, 2278
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 1202, 1873
BstNI	CCWGG	5 cut(s)	206, 512, 1043, 1827, 2261
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	5 cut(s)	204, 510, 1041, 1825, 2259
BstSFI	CTRYAG	1 cut(s)	2037
BstSLI	GKGCMC	1 cut(s)	1393
BstV1I	GCAGC	3 cut(s)	112, 1379, 2261
BstV2I	GAAGAC	1 cut(s)	2229
BstX2I	RGATCY	4 cut(s)	1027, 1529, 1978, 2119
BstYI	RGATCY	4 cut(s)	1027, 1529, 1978, 2119
Bsu15I	ATCGAT	2 cut(s)	1843, 2171
Bsu36I	CCTNAGG	1 cut(s)	1938
BsuRI	GGCC	4 cut(s)	518, 1620, 1956, 2264
BsuTUI	ATCGAT	2 cut(s)	1843, 2171
BtrI	CACGTC	2 cut(s)	2210, 2227
BtsCI	GGATG	4 cut(s)	935, 1603, 1911, 2297
BtsI	GCAGTG	1 cut(s)	2265
BtsIMutI	CAGTG	7 cut(s)	33, 153, 642, 883, 1084, 1812, 2265
Cac8I	GCNNGC	1 cut(s)	710
Cfr13I	GGNCC	5 cut(s)	389, 953, 1512, 1955, 2033
ClaI	ATCGAT	2 cut(s)	1843, 2171
Csp6I	GTAC	9 cut(s)	60, 696, 782, 1050, 1131, 1220, 1229, 1716, 2012
CviAII	CATG	8 cut(s)	39, 65, 201, 235, 691, 713, 1115, 1385
CviQI	GTAC	9 cut(s)	60, 696, 782, 1050, 1131, 1220, 1229, 1716, 2012
DpnI	GATC	8 cut(s)	858, 1029, 1323, 1531, 1980, 2121, 2174, 2280
DpnII	GATC	8 cut(s)	856, 1027, 1321, 1529, 1978, 2119, 2172, 2278
DraIII	CACNNNGTG	1 cut(s)	1388
DrdI	GACNNNNNNGTC	1 cut(s)	334
DseDI	GACNNNNNNGTC	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	1212, 1413
EarI	CTCTTC	2 cut(s)	1212, 1413
Ecl136II	GAGCTC	3 cut(s)	226, 444, 1205
Eco24I	GRGCYC	3 cut(s)	228, 446, 1207
Eco31I	GGTCTC	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	4 cut(s)	389, 953, 1512, 2033
Eco53kI	GAGCTC	3 cut(s)	226, 444, 1205
Eco57I	CTGAAG	1 cut(s)	830
Eco81I	CCTNAGG	1 cut(s)	1938
EcoICRI	GAGCTC	3 cut(s)	226, 444, 1205
EcoO109I	RGGNCCY	1 cut(s)	1512
EcoRII	CCWGG	5 cut(s)	204, 510, 1041, 1825, 2259
EcoRV	GATATC	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	2189
EcoT38I	GRGCYC	3 cut(s)	228, 446, 1207
FaeI	CATG	8 cut(s)	42, 68, 204, 238, 694, 716, 1118, 1388
FalI	AAGNNNNNCTT	2 cut(s)	2214, 2246
FaqI	GGGAC	3 cut(s)	402, 1525, 2196
FatI	CATG	8 cut(s)	38, 64, 200, 234, 690, 712, 1114, 1384
FbaI	TGATCA	1 cut(s)	2278
Fnu4HI	GCNGC	3 cut(s)	101, 1368, 2250
FokI	GGATG	4 cut(s)	922, 1590, 1918, 2284
FriOI	GRGCYC	3 cut(s)	228, 446, 1207
Fsp4HI	GCNGC	3 cut(s)	101, 1368, 2250
FspBI	CTAG	6 cut(s)	348, 1161, 1184, 1350, 1701, 1868
GluI	GCNGC	3 cut(s)	101, 1368, 2250
GsuI	CTGGAG	4 cut(s)	177, 533, 2003, 2178
HaeIII	GGCC	4 cut(s)	518, 1620, 1956, 2264
HapII	CCGG	1 cut(s)	818
Hin1II	CATG	8 cut(s)	42, 68, 204, 238, 694, 716, 1118, 1388
HincII	GTYRAC	1 cut(s)	2133
HindII	GTYRAC	1 cut(s)	2133
HindIII	AAGCTT	4 cut(s)	245, 494, 1484, 1595
HpaII	CCGG	1 cut(s)	818
HphI	GGTGA	6 cut(s)	250, 842, 1305, 1478, 1592, 2000
Hpy166II	GTNNAC	4 cut(s)	953, 1649, 1996, 2133
Hpy188III	TCNNGA	7 cut(s)	398, 542, 675, 807, 1739, 1982, 2195
Hpy8I	GTNNAC	4 cut(s)	953, 1649, 1996, 2133
Hpy99I	CGWCG	1 cut(s)	2033
HpyAV	CCTTC	7 cut(s)	135, 624, 1044, 1420, 1463, 1738, 1946
HpyCH4III	ACNGT	7 cut(s)	538, 781, 968, 1088, 1262, 1643, 1715
HpyCH4IV	ACGT	2 cut(s)	2209, 2226
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 1202, 1873
HpySE526I	ACGT	2 cut(s)	2209, 2226
Hsp92II	CATG	8 cut(s)	42, 68, 204, 238, 694, 716, 1118, 1388
Ksp22I	TGATCA	1 cut(s)	2278
Kzo9I	GATC	8 cut(s)	856, 1027, 1321, 1529, 1978, 2119, 2172, 2278
LguI	GCTCTTC	1 cut(s)	1212
LmnI	GCTCC	3 cut(s)	881, 1202, 2091
Lsp1109I	GCAGC	3 cut(s)	112, 1379, 2261
LweI	GCATC	5 cut(s)	944, 1885, 2090, 2263, 2281
MaeI	CTAG	6 cut(s)	348, 1161, 1184, 1350, 1701, 1868
MaeII	ACGT	2 cut(s)	2209, 2226
MaeIII	GTNAC	7 cut(s)	167, 256, 325, 775, 1082, 1339, 1895
MalI	GATC	8 cut(s)	858, 1029, 1323, 1531, 1980, 2121, 2174, 2280
MboI	GATC	8 cut(s)	856, 1027, 1321, 1529, 1978, 2119, 2172, 2278
MfeI	CAATTG	1 cut(s)	2124
MflI	RGATCY	4 cut(s)	1027, 1529, 1978, 2119
MhlI	GDGCHC	5 cut(s)	228, 446, 886, 1207, 1393
MlyI	GAGTC	3 cut(s)	548, 847, 2159
MmeI	TCCRAC	3 cut(s)	531, 1482, 2011
Mph1103I	ATGCAT	1 cut(s)	2189
MroXI	GAANNNNTTC	2 cut(s)	800, 2061
MseI	TTAA	5 cut(s)	95, 252, 633, 701, 1569
MslI	CAYNNNNRTG	1 cut(s)	1113
MspA1I	CMGCKG	2 cut(s)	103, 1579
MspI	CCGG	1 cut(s)	818
MspR9I	CCNGG	5 cut(s)	206, 512, 1043, 1827, 2261
MunI	CAATTG	1 cut(s)	2124
Mva1269I	GAATGC	1 cut(s)	1102
MvaI	CCWGG	5 cut(s)	206, 512, 1043, 1827, 2261
MwoI	GCNNNNNNNGC	3 cut(s)	201, 1202, 1873
NdeII	GATC	8 cut(s)	856, 1027, 1321, 1529, 1978, 2119, 2172, 2278
NlaIII	CATG	8 cut(s)	42, 68, 204, 238, 694, 716, 1118, 1388
NlaIV	GGNNCC	5 cut(s)	390, 1390, 1513, 2093, 2121
NmuCI	GTSAC	3 cut(s)	256, 325, 1895
NsiI	ATGCAT	1 cut(s)	2189
NspI	RCATGY	1 cut(s)	716
NspV	TTCGAA	1 cut(s)	2220
PciSI	GCTCTTC	1 cut(s)	1212
PctI	GAATGC	1 cut(s)	1102
PdmI	GAANNNNTTC	2 cut(s)	800, 2061
PfeI	GAWTC	8 cut(s)	317, 406, 743, 814, 1583, 1658, 1882, 2021
PkrI	GCNGC	3 cut(s)	102, 1369, 2251
PleI	GAGTC	3 cut(s)	548, 846, 2158
PpsI	GAGTC	3 cut(s)	548, 846, 2158
PpuMI	RGGWCCY	1 cut(s)	1512
Psp124BI	GAGCTC	3 cut(s)	228, 446, 1207
Psp5II	RGGWCCY	1 cut(s)	1512
Psp6I	CCWGG	5 cut(s)	204, 510, 1041, 1825, 2259
PspGI	CCWGG	5 cut(s)	204, 510, 1041, 1825, 2259
PspN4I	GGNNCC	5 cut(s)	390, 1390, 1513, 2093, 2121
PspPI	GGNCC	5 cut(s)	389, 953, 1512, 1955, 2033
PspPPI	RGGWCCY	1 cut(s)	1512
PsuI	RGATCY	4 cut(s)	1027, 1529, 1978, 2119
PvuII	CAGCTG	2 cut(s)	103, 1579
RsaI	GTAC	9 cut(s)	61, 697, 783, 1051, 1132, 1221, 1230, 1717, 2013
RsaNI	GTAC	9 cut(s)	60, 696, 782, 1050, 1131, 1220, 1229, 1716, 2012
RseI	CAYNNNNRTG	1 cut(s)	1113
SacI	GAGCTC	3 cut(s)	228, 446, 1207
SapI	GCTCTTC	1 cut(s)	1212
SaqAI	TTAA	5 cut(s)	95, 252, 633, 701, 1569
SatI	GCNGC	3 cut(s)	101, 1368, 2250
Sau3AI	GATC	8 cut(s)	856, 1027, 1321, 1529, 1978, 2119, 2172, 2278
Sau96I	GGNCC	5 cut(s)	389, 953, 1512, 1955, 2033
ScaI	AGTACT	3 cut(s)	697, 783, 1221
SchI	GAGTC	3 cut(s)	548, 847, 2159
ScrFI	CCNGG	5 cut(s)	206, 512, 1043, 1827, 2261
SduI	GDGCHC	5 cut(s)	228, 446, 886, 1207, 1393
SfaNI	GCATC	5 cut(s)	944, 1885, 2090, 2263, 2281
SfcI	CTRYAG	1 cut(s)	2037
SfuI	TTCGAA	1 cut(s)	2220
SinI	GGWCC	4 cut(s)	389, 953, 1512, 2033
SmiMI	CAYNNNNRTG	1 cut(s)	1113
SmlI	CTYRAG	5 cut(s)	352, 599, 1362, 1751, 2253
SmoI	CTYRAG	5 cut(s)	352, 599, 1362, 1751, 2253
SsiI	CCGC	1 cut(s)	1235
SspMI	CTAG	6 cut(s)	348, 1161, 1184, 1350, 1701, 1868
SstI	GAGCTC	3 cut(s)	228, 446, 1207
StyD4I	CCNGG	5 cut(s)	204, 510, 1041, 1825, 2259
TaaI	ACNGT	7 cut(s)	538, 781, 968, 1088, 1262, 1643, 1715
TaiI	ACGT	2 cut(s)	2212, 2229
TaqI	TCGA	5 cut(s)	1402, 1843, 2104, 2171, 2220
TatI	WGTACW	6 cut(s)	695, 781, 1130, 1219, 1228, 2011
TfiI	GAWTC	8 cut(s)	317, 406, 743, 814, 1583, 1658, 1882, 2021
Tru1I	TTAA	5 cut(s)	95, 252, 633, 701, 1569
Tru9I	TTAA	5 cut(s)	95, 252, 633, 701, 1569
TscAI	CASTG	7 cut(s)	33, 160, 649, 883, 1084, 1819, 2272
TseFI	GTSAC	3 cut(s)	256, 325, 1895
TseI	GCWGC	3 cut(s)	100, 1367, 2249
Tsp45I	GTSAC	3 cut(s)	256, 325, 1895
TspDTI	ATGAA	6 cut(s)	189, 398, 442, 1113, 1704, 2088
TspGWI	ACGGA	1 cut(s)	2290
TspRI	CASTG	7 cut(s)	33, 160, 649, 883, 1084, 1819, 2272
VpaK11BI	GGWCC	4 cut(s)	389, 953, 1512, 2033
XapI	RAATTY	3 cut(s)	211, 448, 928
XceI	RCATGY	1 cut(s)	716
XmnI	GAANNNNTTC	2 cut(s)	800, 2061
XspI	CTAG	6 cut(s)	348, 1161, 1184, 1350, 1701, 1868
ZrmI	AGTACT	3 cut(s)	697, 783, 1221
Zsp2I	ATGCAT	1 cut(s)	2189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.